3300025309: Soil microbial communities from Rifle, Colorado, USA - Groundwater C2

Overview

Basic Information

• IMG/M Taxon OID: 3300025309
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0054775 | Ga0209212
• Sample Name: Soil microbial communities from Rifle, Colorado, USA - Groundwater C2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1062417705
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium HGW-Tenericutes-7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -107.97
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003800	Metagenome / Metatranscriptome	468	Y
F007838	Metagenome / Metatranscriptome	344	Y
F009579	Metagenome / Metatranscriptome	316	Y
F009862	Metagenome / Metatranscriptome	312	Y
F015640	Metagenome / Metatranscriptome	253	Y
F017253	Metagenome	242	Y
F018779	Metagenome / Metatranscriptome	233	Y
F021450	Metagenome	219	N
F026515	Metagenome / Metatranscriptome	197	Y
F027235	Metagenome / Metatranscriptome	195	Y
F029285	Metagenome / Metatranscriptome	189	Y
F036104	Metagenome / Metatranscriptome	170	Y
F056711	Metagenome / Metatranscriptome	137	Y
F068265	Metagenome	125	Y
F074912	Metagenome / Metatranscriptome	119	N
F084410	Metagenome	112	Y
F096266	Metagenome	105	Y
F098345	Metagenome	103	N
F099501	Metagenome	103	Y
F103864	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209212_1003319	All Organisms → cellular organisms → Bacteria	21417
Ga0209212_1005297	All Organisms → cellular organisms → Bacteria	15454
Ga0209212_1009262	Not Available	10301
Ga0209212_1018127	All Organisms → cellular organisms → Bacteria	6332
Ga0209212_1023813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5208
Ga0209212_1035224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3904
Ga0209212_1043064	All Organisms → cellular organisms → Bacteria → Proteobacteria	3363
Ga0209212_1044889	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3261
Ga0209212_1050864	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2975
Ga0209212_1080030	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2129
Ga0209212_1152371	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1304
Ga0209212_1169314	All Organisms → cellular organisms → Bacteria	1201
Ga0209212_1182740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1131
Ga0209212_1207853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium HGW-Tenericutes-7	1022
Ga0209212_1210464	All Organisms → cellular organisms → Bacteria	1012
Ga0209212_1226142	All Organisms → cellular organisms → Bacteria	956
Ga0209212_1229069	Not Available	946
Ga0209212_1260620	All Organisms → cellular organisms → Bacteria	853
Ga0209212_1351998	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672
Ga0209212_1384810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	622
Ga0209212_1389417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	615

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209212_1003319	Ga0209212_100331922	F056711	MRKAFTALAAAAFALSIVAGGCAKDKSPSQLQAGKKGIAGTEKKAAPKPRAKLFTGTIEDMDEAAGTLTLKGPKGEMSFQARKKVKEQLGELEIGDKVIVKHDGKTALSIVKPRTSKTALAWYRNEETETVREEFH
Ga0209212_1005297	Ga0209212_100529714	F003800	MGDERRDDADQRRADVYSSARIGAAAALTLVLVVLLVLDVAVPGYDISPGILLPLLGAICALLGLEASAVWRSVR
Ga0209212_1005297	Ga0209212_100529715	F009579	MSGIELVAAFLAGVGMGGALDRFVLPLLVDAWIDRLRRHGR
Ga0209212_1005595	Ga0209212_10055955	F074912	MVPFNQMRDLHTLALAALRSGDVLAVTKEKYVVQFIREGLQHQLPLINMQLKKKGMRAISLKSLKK
Ga0209212_1009262	Ga0209212_10092622	F029285	MKNQANYSEYECPYSHIEKECGHELRGPEGYENTYGVWCACGFRAPVFALDPIELGLKKK
Ga0209212_1018127	Ga0209212_10181273	F009862	MPKPKAEKPLVVRCPNCKKTNEPNFNETTHRYACPICSAPVDVQVIIEKKKRSGNKGRNW
Ga0209212_1023813	Ga0209212_10238136	F027235	MDSYVVRIYRRAGAKSRILIGTVEAAGTEKRLGFSNIEELWEILGRRKGRDLCAPPSPRRRLRKEVMSATAASGIEEPAEGVRQMKPDFRTLRGGIR
Ga0209212_1035224	Ga0209212_10352245	F003800	MGDEHRGRAPERSRADVYSSARIGAAAALTLVLVVLLVLDVAVEGYDISAGILLPLLGAILALLGLEASAVWRGVR
Ga0209212_1043064	Ga0209212_10430644	F056711	MRKAFTMLAAAAFALAILAGGCAKDKSPPRLQPAKKGIAGAEKKAAPKPRAKLFTGTIEDLDEAAGTLTLKGPKGEMSFQAREKVKEQLGELELGDKVIVKHDGKTALSIVKPRTSKTALALYRNEEPGKSHPNFSNQ
Ga0209212_1044889	Ga0209212_10448891	F084410	LTQNLSLIYQIRDFGSRQILLPRQLYLSPGFAKIAPWWLARRDYFSAKVPGLVSAGCATNVYS
Ga0209212_1050864	Ga0209212_10508643	F099501	MVDRFMLKFLGELFYLIIALCTIYGLWNLFREYRAINSTVIRTHIIAYELQKMVKSRARQ
Ga0209212_1080030	Ga0209212_10800304	F068265	MANKKHSAAMPIKEGIFFPEDFTKLHKDYVIYIKEGVIIDLKKL
Ga0209212_1152371	Ga0209212_11523711	F021450	MKKTISLLALLLLFSFEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIVAFIMA
Ga0209212_1169314	Ga0209212_11693141	F026515	LLDGAYDEEIDAVAREFDPDRRAKLTRAMGQKLYDGYHGVMLGMKSITWALSKRVGGWQTLAYVPMETNYEYVS
Ga0209212_1182740	Ga0209212_11827401	F103864	LAGARASGASEDEVREAISFAIRANAAKTHADILKVYTDGGR
Ga0209212_1207853	Ga0209212_12078532	F007838	MRSLFTFFLLLLTFEVFSQTVVVRSPTWKIEDEAKDALEKADRLRQLEKLTEQVKTQKESLQVIRDATEKLRKINRKVANYHNLELAIVQVSEAYTRVLSSLKRISDNNCFKPSEYHMISESMMGLLSQTSYSITTLTVVLTDNFSEMTDGERLLNMNQAIKELRENLGVINSAIIEVEILDNQRMQLRTLNYINSIFK
Ga0209212_1210464	Ga0209212_12104641	F036104	MQDGIPLSIGIIIVAALLGATFIAGVVVFSVLSAAF
Ga0209212_1226142	Ga0209212_12261421	F017253	GDGRTQIGYNVGSYTQGRTAGDFLSSRKAARAERCTPKTTAAELAGS
Ga0209212_1229069	Ga0209212_12290691	F098345	MQRPKNIKNLTHSASILNSLYLGKEIVYTGTGHSLRPYRGEIINIAYYSDLESVPYAEIKLKIWNNRTVTKIMKLSD
Ga0209212_1260620	Ga0209212_12606202	F027235	MDSYVVRIYRRGGRKSRILIGTAEVAGAERKMAFSNIEELWGILRHRKGRDPWAPPSPRRRLRKEVMSATASSGLEESAEGVRQIKSDL
Ga0209212_1351998	Ga0209212_13519981	F018779	MEVVTMTIKEPEKKLPPIGALAQHSLSGVKDLMKEILTKPHVDEDKMSYWQSIFSQSKANGCFYRGEDLPHMKWQWPRGTWFQEQLSHHPKALEFAAHHAKN
Ga0209212_1384810	Ga0209212_13848101	F015640	RVIRYEIFYAISLAGLLHYMVTFNSSQRRMSLRVQLEIMKKPLIEHLKSEGIPIWEDLGRMPGEQRPKEKFLASDIVLATQAFITHNAHVTKAFETERFLDENQPYLDNIGDISDIMRMLKRISGEVHAKIAQAYEANLNQRYLMTTGDPFLLGFVAACGYVRNRSSMEILDKALDRLLGEFERAETDPLRFDDYQRALDMIHASR
Ga0209212_1389417	Ga0209212_13894172	F096266	LFLTFVLLAILVAIAFSTLKKNRKQKLEKPKHRMLEDD