Metagenome Family F099501

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099501
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	MVDGFMLKFLGELFYLIVALSALYGLWDLFRAYRAINSTVIKAHITAYELRKMIESRSR
Number of Associated Samples	67
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.44 %
% of genes near scaffold ends (potentially truncated)	18.45 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.146 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (31.068 % of family members)
Environment Ontology (ENVO)	Unclassified (37.864 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (39.806 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.52% β-sheet: 0.00% Coil/Unstructured: 34.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00717	Peptidase_S24	39.81
PF00817	IMS	16.50
PF04014	MazE_antitoxin	7.77
PF01797	Y1_Tnp	3.88
PF13470	PIN_3	1.94
PF11799	IMS_C	1.94
PF13411	MerR_1	0.97
PF13419	HAD_2	0.97
PF02508	Rnf-Nqr	0.97
PF13188	PAS_8	0.97
PF13442	Cytochrome_CBB3	0.97
PF07683	CobW_C	0.97
PF12704	MacB_PCD	0.97
PF07505	DUF5131	0.97
PF03597	FixS	0.97
PF07238	PilZ	0.97
PF12837	Fer4_6	0.97
PF00730	HhH-GPD	0.97
PF06616	BsuBI_PstI_RE	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	16.50
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	3.88
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.97
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.97
COG0523	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	General function prediction only [R]	0.97
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.97
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.97
COG1347	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD	Energy production and conversion [C]	0.97
COG2209	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE	Energy production and conversion [C]	0.97
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.97
COG3197	Cytochrome oxidase maturation protein, CcoS/FixS family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.97
COG4657	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfA subunit	Energy production and conversion [C]	0.97
COG4660	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfE subunit	Energy production and conversion [C]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	28.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.68 %
Unclassified	root	N/A	4.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.91 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	18.45 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	8.74 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	6.80 %
Unclassified	root	N/A	4.85 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.91 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8.74 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	6.80 %
Unclassified	root	N/A	4.85 %
Candidatus Aerophobetes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes	1.94 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	6.80 %
Unclassified	root	N/A	4.85 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	1.94 %
Candidatus Aerophobus	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	1.94 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.97 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Candidatus Sulfobium	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium	6.80 %
Unclassified	root	N/A	4.85 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1.94 %
Candidatus Aerophobus	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	1.94 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.97 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Candidatus Sulfobium mesophilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	6.80 %
Unclassified	root	N/A	4.85 %
Candidatus Aerophobus	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	1.94 %
Smithella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella	0.97 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.97 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Candidatus Sulfobium mesophilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	6.80 %
Unclassified	root	N/A	4.85 %
Candidatus Aerophobus	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	1.94 %
unclassified Smithella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella	0.97 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.97 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	18.45 %
Candidatus Sulfobium mesophilum	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	6.80 %
Unclassified	root	N/A	4.85 %
Candidatus Aerophobus	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	1.94 %
Smithella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.	0.97 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.97 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_106258951	Not Available	709	Open in IMG/M
3300003990\|Ga0055455_10018039	All Organisms → cellular organisms → Bacteria → Nitrospirae	1694	Open in IMG/M
3300004006\|Ga0055453_10013630	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300004024\|Ga0055436_10018372	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1658	Open in IMG/M
3300004024\|Ga0055436_10139468	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300004057\|Ga0055496_10055521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	856	Open in IMG/M
3300004070\|Ga0055488_10197806	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	543	Open in IMG/M
3300005832\|Ga0074469_10119660	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	831	Open in IMG/M
3300006224\|Ga0079037_100145988	All Organisms → cellular organisms → Bacteria	2064	Open in IMG/M
3300006224\|Ga0079037_100305228	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1477	Open in IMG/M
3300006224\|Ga0079037_101868434	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	600	Open in IMG/M
3300006354\|Ga0075021_10430239	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300006930\|Ga0079303_10239886	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300007959\|Ga0079306_1195464	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009053\|Ga0105095_10273446	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300009087\|Ga0105107_10304376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1111	Open in IMG/M
3300009087\|Ga0105107_10878880	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300009091\|Ga0102851_10530177	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300009091\|Ga0102851_11486150	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300009111\|Ga0115026_10009386	All Organisms → cellular organisms → Bacteria	4239	Open in IMG/M
3300009111\|Ga0115026_10328769	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300009111\|Ga0115026_11663498	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009153\|Ga0105094_10907410	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	520	Open in IMG/M
3300009179\|Ga0115028_10652162	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300009506\|Ga0118657_10013318	All Organisms → cellular organisms → Bacteria	13092	Open in IMG/M
3300010343\|Ga0074044_10535716	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300011422\|Ga0137425_1081779	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300011431\|Ga0137438_1257450	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	522	Open in IMG/M
3300012353\|Ga0137367_10683429	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300012931\|Ga0153915_10366005	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1625	Open in IMG/M
3300012964\|Ga0153916_11482058	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300012964\|Ga0153916_13346829	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	504	Open in IMG/M
3300014315\|Ga0075350_1098602	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300014498\|Ga0182019_10885409	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	643	Open in IMG/M
3300014874\|Ga0180084_1053508	Not Available	804	Open in IMG/M
3300014883\|Ga0180086_1117453	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300014885\|Ga0180063_1284593	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	525	Open in IMG/M
3300017930\|Ga0187825_10008129	All Organisms → cellular organisms → Bacteria → Proteobacteria	3511	Open in IMG/M
3300017930\|Ga0187825_10213336	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	698	Open in IMG/M
3300017961\|Ga0187778_10665232	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300017966\|Ga0187776_10129587	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1532	Open in IMG/M
3300017973\|Ga0187780_10699834	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300018016\|Ga0187880_1015714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4711	Open in IMG/M
3300018059\|Ga0184615_10004532	All Organisms → cellular organisms → Bacteria	7461	Open in IMG/M
3300018059\|Ga0184615_10651165	Not Available	542	Open in IMG/M
3300018060\|Ga0187765_10560386	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300018064\|Ga0187773_10072595	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300018083\|Ga0184628_10548503	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	591	Open in IMG/M
3300021090\|Ga0210377_10017294	All Organisms → cellular organisms → Bacteria	5359	Open in IMG/M
3300021090\|Ga0210377_10176819	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300021090\|Ga0210377_10393422	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	825	Open in IMG/M
3300021090\|Ga0210377_10407414	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300025309\|Ga0209212_1050864	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2975	Open in IMG/M
3300025552\|Ga0210142_1033504	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	980	Open in IMG/M
3300025560\|Ga0210108_1032699	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	972	Open in IMG/M
3300027818\|Ga0209706_10083189	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300027835\|Ga0209515_10004087	All Organisms → cellular organisms → Bacteria	20053	Open in IMG/M
3300027871\|Ga0209397_10056351	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1490	Open in IMG/M
3300027877\|Ga0209293_10123458	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300027877\|Ga0209293_10208319	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	962	Open in IMG/M
3300027894\|Ga0209068_10517398	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300029827\|Ga0134606_10139457	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300029827\|Ga0134606_10238604	Not Available	559	Open in IMG/M
3300031281\|Ga0307420_1124950	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300031563\|Ga0307436_1009726	All Organisms → cellular organisms → Bacteria	3347	Open in IMG/M
3300031949\|Ga0214473_10910793	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300032173\|Ga0315268_11948050	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	601	Open in IMG/M
3300032782\|Ga0335082_10237112	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300032892\|Ga0335081_11978685	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300033158\|Ga0335077_11002754	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp.	833	Open in IMG/M
3300033233\|Ga0334722_10000460	All Organisms → cellular organisms → Bacteria	60804	Open in IMG/M
3300033233\|Ga0334722_10001462	All Organisms → cellular organisms → Bacteria	29428	Open in IMG/M
3300033233\|Ga0334722_10030758	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4436	Open in IMG/M
3300033408\|Ga0316605_10385561	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1260	Open in IMG/M
3300033408\|Ga0316605_10421885	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	1210	Open in IMG/M
3300033414\|Ga0316619_10202165	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300033419\|Ga0316601_101253820	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300033419\|Ga0316601_101376436	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Sulfobium → Candidatus Sulfobium mesophilum	710	Open in IMG/M
3300033419\|Ga0316601_101631501	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	650	Open in IMG/M
3300033480\|Ga0316620_10001378	All Organisms → cellular organisms → Bacteria	10477	Open in IMG/M
3300033480\|Ga0316620_10530135	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1094	Open in IMG/M
3300033480\|Ga0316620_12128301	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300033481\|Ga0316600_10198362	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1308	Open in IMG/M
3300033482\|Ga0316627_100129697	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300033485\|Ga0316626_11613110	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → Candidatus Aerophobus	585	Open in IMG/M
3300033486\|Ga0316624_10322071	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300033486\|Ga0316624_10490297	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300033486\|Ga0316624_10680944	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300033486\|Ga0316624_10747534	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	865	Open in IMG/M
3300033486\|Ga0316624_11006600	Not Available	751	Open in IMG/M
3300033486\|Ga0316624_11048204	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	737	Open in IMG/M
3300033487\|Ga0316630_10226420	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300033489\|Ga0299912_10017528	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	6123	Open in IMG/M
3300033513\|Ga0316628_100012805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7372	Open in IMG/M
3300033513\|Ga0316628_100111555	All Organisms → cellular organisms → Bacteria → Nitrospirae	3099	Open in IMG/M
3300033513\|Ga0316628_100179260	All Organisms → cellular organisms → Bacteria → Nitrospirae	2520	Open in IMG/M
3300033513\|Ga0316628_100423947	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300033513\|Ga0316628_100721722	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300033513\|Ga0316628_100899545	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300033513\|Ga0316628_101042468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300033513\|Ga0316628_101927457	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300033513\|Ga0316628_101928727	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300033513\|Ga0316628_102859329	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	634	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	56.31%
Terrestrial	Environmental → Terrestrial	43.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.75%
Freshwater	Environmental → Aquatic → Freshwater	32.04%
Marine	Environmental → Aquatic → Marine	13.59%
Sediment	Environmental → Aquatic → Sediment	10.68%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.94%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	38.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	15.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	9.71%
Lake	Environmental → Aquatic → Freshwater → Lake	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	2.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.94%
Coastal	Environmental → Aquatic → Marine → Coastal	1.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.94%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	37.86%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	15.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.77%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.94%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.94%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	31.07%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.77%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	6.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.85%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	4.85%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.88%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.94%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.94%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.94%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.97%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.97%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.97%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.97%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300007959	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025309	Soil microbial communities from Rifle, Colorado, USA - Groundwater C2	Environmental	Open in IMG/M
3300025552	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029827	Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047	Environmental	Open in IMG/M
3300031281	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-40	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1062589512	3300001213	Wetland	MVNGFMLKFLGELFYLIVAVCAVYGIWDLSRAYRAINSTVIKTHITAYELRKMVESRSR*
Ga0055455_100180391	3300003990	Natural And Restored Wetlands	MASGFILKILGDLFYLIVALCAFYSLWGLFRTQRAINSTVIKTHVTAYELQKMIESRTRQA*
Ga0055453_100136302	3300004006	Natural And Restored Wetlands	MAEGFILKILGDLFYLIVALCAFYSLWGLFRTQRAINSTVIKTHVTAYELQKMIESRTRQA*
Ga0055436_100183722	3300004024	Natural And Restored Wetlands	MVDGFMLKFLGGLFYLIVVSCALYGLWNFFRRYRNINATVIKTHITAYELQKLIESRARQV*
Ga0055436_101394681	3300004024	Natural And Restored Wetlands	MVDGFMLKFLGGLFYLIVALCALYGLRNLLRAYRAINSTVIKTHVTAHELQKMIESRAR
Ga0055496_100555213	3300004057	Natural And Restored Wetlands	KFLGELFYLIVALSAVYALWDFFRAYRTINSTVIKAHITAYELRKMIESRARQV*
Ga0055488_101978061	3300004070	Natural And Restored Wetlands	MANVFMLKFMGELFYFIVALFAVYGLWDFLRANRAINSTVIKAHITAYELRKMVQGRARQV*
Ga0074469_101196602	3300005832	Sediment (Intertidal)	MVDVFILKFLGELFYLIVALCALYGLWDLLREYKVINSTVIKTRITAYELRKMVENRSR*
Ga0079037_1001459882	3300006224	Freshwater Wetlands	MVDGFMLKFLGKLFYVIVALSAIYGLWDLFRAYRAINSTVIKTHITAYELRKMIESRSR*
Ga0079037_1003052282	3300006224	Freshwater Wetlands	MTDGFMLKFLGELFYLIVAICAVYGLWDLFRSYRAINSTVIKTHITAYELRKMIGSRPR*
Ga0079037_1018684341	3300006224	Freshwater Wetlands	TRRKNKMVDGFMLKFLGELFYLIVAVCAVYVLWDLSRSYRAINSTVIKTHITAYELRKMIGSRSR*
Ga0075021_104302392	3300006354	Watersheds	MVDGFMLKFLGELFYLVIALCALYGTWDLFRRYRQINSTVIKTHITAYELQKMVEGRVRHV*
Ga0079303_102398861	3300006930	Deep Subsurface	MADGFMLKFLGELFYLIVALSALYGLWDFSRAYRAINSTVIKTHITAY
Ga0079306_11954641	3300007959	Deep Subsurface	MVDVFMLKFFGGLFYLIVALSALYGLWDLFRAYRAINSTVIKTYATAYELRKMIGSRSR*
Ga0105095_102734462	3300009053	Freshwater Sediment	MVDVFMLKFLGGLFYLIVALSALYGLWDLFRAYRATNSTVIKTHITAYELQRMVEGRSR*
Ga0105107_103043763	3300009087	Freshwater Sediment	MLKFLGELFYVIVALSAIYGLWDLFRAYKAINSTVIKTHITAYELRKMIESRARCRT*
Ga0105107_108788802	3300009087	Freshwater Sediment	MVDVFMLKFLGGLFYLIVALSALYGLWDFFRAYRAINSTVIKTHITAYELRKMVESRSR
Ga0102851_105301771	3300009091	Freshwater Wetlands	MVDGFMLKFLGELFYLIVALSALYGIWDFFRAYRAINSTVIKTHITAYELRKMIESRSR*
Ga0102851_114861502	3300009091	Freshwater Wetlands	MVDGFMLKFLGELFYLIVAVCAVYVLWDLSRSYRAINSTVIKTHITAYELRKMIGSRSR*
Ga0115026_100093862	3300009111	Wetland	MVDGLMLKFLGKLFYVIVALSAIYGLWDLFRAYRAINSTVIKTHITAYELRKMIESRSR*
Ga0115026_103287692	3300009111	Wetland	MADTFMLKFLGQLFYLIVALCALYGTWDLFRRYKKINSTVIKTHIAAYELQRMLEGRR*
Ga0115026_116634982	3300009111	Wetland	YLIVALSALYGLWDLFRAYRTINSTVIKAHITAYELRRMIEGRARQV*
Ga0105094_109074102	3300009153	Freshwater Sediment	MVDVFMLKFLGGLFYLIVALSALYGLWDLFRAYRATNSTVIKTHITAYELRRMVEGRSR*
Ga0115028_106521623	3300009179	Wetland	LGELFYLIVAICAVYGLWDLFRSYRVINSTVIKTHITAYELRKMIGSRPR*
Ga0118657_100133185	3300009506	Mangrove Sediment	MVDGFMLKLFGGLFYLSVAVCAFYGLWGFFRRYRRTNSTVIKTHITAYELQKMVEGRSR*
Ga0074044_105357161	3300010343	Bog Forest Soil	MVDRFMLNFLGELFYLIVALCALYGIWGLFRRYRQINSIVIRTHITAYELQKMVESRSR*
Ga0137425_10817792	3300011422	Soil	MADTFILKFLGELFYLIVALCALYGTWDLFRRYKKINSTVIKTHIAAYELQKMIGSRSR*
Ga0137438_12574502	3300011431	Soil	MVDVFMLKFLGELFYLIVTFSVLYGLWDLFRAYRTINSTAIKTYVTAYKLQKMVEGRTRQM*
Ga0137367_106834292	3300012353	Vadose Zone Soil	MIEGFILKSLGVLFYLIVALCALYGTWVLFRRYRQINSTVIKTHITAYKLQKLIEGRARQV*
Ga0153915_103660052	3300012931	Freshwater Wetlands	MVDGFMLKFLGELFYLIVALCALYGTWCLFRRYRKINSTIIKAHITAYELQKMVESRSR*
Ga0153916_114820581	3300012964	Freshwater Wetlands	MVDGFMLKFLGGLFYLIVALCALYGTWGLFRRYRKINSTIIKTHITAYELQKMVESRSR*
Ga0153916_133468291	3300012964	Freshwater Wetlands	MVDAFMLKFLGELFYLIVALCALYGTWGFFRRYRKINSPIIKTHITAYELQKMIEGRVRQV*
Ga0075350_10986022	3300014315	Natural And Restored Wetlands	MVDGFMLKFLGELFYLIVALSAIYGLWDLFSAYKAINSTVIKTHITAYELRKMIEGRARQV*
Ga0182019_108854091	3300014498	Fen	MIAGFMLKFLGELFYLIVAGCALYGVWNFFRGYRAINSTVIKAHITAYELQKMVESRSR*
Ga0180084_10535082	3300014874	Soil	MLKFLGELFYLIVAICAVYVLWDLFRSYRVINSTVIKAHITAYELRKMIGSRSR*
Ga0180086_11174531	3300014883	Soil	GELFYLIVAICAVYGLWDLSRSYRAINSTVIKTHITAYRLQKMVEGRARQV*
Ga0180063_12845931	3300014885	Soil	MVDGFMLKFLGELFYLIVALSALYGLWDLFRAYRAINSTVIKAHITAYELRKMIESRSR*
Ga0187825_100081296	3300017930	Freshwater Sediment	MVEVSMLKLFGGLFYLILALCAFSGAWDLLRRYRKMNATAIRAHIAAYRIQKMVESRSR
Ga0187825_102133362	3300017930	Freshwater Sediment	MGDGFMLKFLGELFYLIVALCAVYGTWDFFRRYRKINSTVIRTHITAYKIQKMVESRSR
Ga0187778_106652322	3300017961	Tropical Peatland	MGDVLMLKFLGGLFYLVVALCALSGSWSLFREYRKTNSTAIRAHITAYRIQKMVESRSR
Ga0187776_101295872	3300017966	Tropical Peatland	MVDGFMVKFLGELFYLIVALCALYGTWGLFRRYRQINSTVIKTHIIAYELQKMVESRSRLRR
Ga0187780_106998342	3300017973	Tropical Peatland	MVDGSMLKFFGELFYLIVALCALYGIWGLFRRYRQINSIVIKTHITAYELQKMLESRSR
Ga0187880_10157145	3300018016	Peatland	MVDGFTLKFLGELFYLIVALCALYGTWGLFRRYRKINSTVIRTHITAYRIQKMVESRSR
Ga0184615_100045327	3300018059	Groundwater Sediment	MLKFLGELFYLIVALCALYGLWDLFRAYRAINSTVIKTHITAYRLQKMVEGRARQV
Ga0184615_106511652	3300018059	Groundwater Sediment	RNNKMVDGFMLKFLGELFYLIVALSALYGLWDLFRAYRAINSTVIKTHITAYELRKMIEGRARQV
Ga0187765_105603861	3300018060	Tropical Peatland	MGDVLMLKFLGGLFYLVVALCALSGSWSLFREYRKTNSTAIRAHITAYRIQKMVESR
Ga0187773_100725954	3300018064	Tropical Peatland	MLKFFGELFYLSVALCALYGTWGLFRRYRRINSIVIKTHITAYEIQKIVESRSR
Ga0184628_105485031	3300018083	Groundwater Sediment	MVDGFMLKFLGELFYLIVALCALYGIWGFFRRYREINSTVIKTHVTAYQLQKMVEGRLR
Ga0210377_100172943	3300021090	Groundwater Sediment	MVDGFMLKFLGELFYLIVALCALYGLWDLFRAYRAINSTVIKTHITAYRLQKMVEGRARQ
Ga0210377_101768192	3300021090	Groundwater Sediment	MADGFMLKFFGELFYLIVALSALYGLWDLFRAYRAINATVIKTHITAYELRKMVEGRARQ
Ga0210377_103934221	3300021090	Groundwater Sediment	MVDGSMLKFLGGLFYLSVALSAFYGLWDLFRAYRAINSTIIKTHVTAYELQKMIESRSR
Ga0210377_104074142	3300021090	Groundwater Sediment	MVDGFMLKFLGELFYLIVAICAVYGIYALSRSYKAINSTVIKAHITAYELRKMVESRSR
Ga0209212_10508643	3300025309	Soil	MVDRFMLKFLGELFYLIIALCTIYGLWNLFREYRAINSTVIRTHIIAYELQKMVKSRARQ
Ga0210142_10335042	3300025552	Natural And Restored Wetlands	MASGFILKILGDLFYLIVALCAFYSLWGLFRTQRAINSTVIKTHVTAYELQKMIESRTRQ
Ga0210108_10326992	3300025560	Natural And Restored Wetlands	MVDGFMLKFLGGLFYLIVVSCALYGLWNFFRRYRNINATVIKTHITAYELQKLIESRARQ
Ga0209706_100831892	3300027818	Freshwater Sediment	MVDGFMLKFLGELFYVIVALSAIYGLWDLFRAYKAINSTVIKTHITAYELRKMIESRARCRT
Ga0209515_100040878	3300027835	Groundwater	MLKFLGELFYLIVALCALYGTWGFFRRYRKINSTVIKTHITAYEIQKMVESRSR
Ga0209397_100563513	3300027871	Wetland	MTDGFMLKFLGELFYLIVAICAVYGLWDLFRSYRAINSTVIKTHITAYELRKMIGSRPR
Ga0209293_101234582	3300027877	Wetland	MVDGLMLKFLGKLFYVIVALSAIYGLWDLFRAYRAINSTVIKTHITAYELRKMIESRSR
Ga0209293_102083191	3300027877	Wetland	MTDGFMLKFLGELFYLIVAICAVYGLWDLFRTYRAINSTVIKTHITAYELRKMIGSRPR
Ga0209068_105173981	3300027894	Watersheds	MVDGFMLKFLGELFYLVIALCALYGTWDLFRRYRQINSTVIKTHITAYELQKMVEGRVRH
Ga0134606_101394572	3300029827	Marine Sediment	MTGGFMLKFLGDLFYMIVALFALYGLMDLFRAQRTINSTVIKTHVTAYELKKMIRSRTQF
Ga0134606_102386041	3300029827	Marine Sediment	MADGFMLKFLGDLFYLIVALFALYCLLDLFRANRAINSAVIKTHVTVYELQKLIESRARK
Ga0307420_11249502	3300031281	Salt Marsh	MAGGFMLRFLGDLFYLVVALGALYGLLDLFRAQRAINSTVIKTHVTAYELQKMIENRARK
Ga0307436_10097262	3300031563	Salt Marsh	MAGGFMLRFLGDLFYLVVALFALYGLLDLFRAQKAMNSKVIKTHVTAYELQKMIENRARK
Ga0214473_109107932	3300031949	Soil	MVDVFMLKLLGELFYLSVALCALYGLWDLFRAYKAINSTALKTRVTAYEIQKMVEGRARQ
Ga0315268_119480503	3300032173	Sediment	MVDRFMLKFLGELFYFIVALCALYGLWDFFRAYRTINSTVIKTHITAYKLQKMVESRARQ
Ga0335082_102371124	3300032782	Soil	MVDGVTLKSLGELFYLVVALCALYGTWDLFRRYRKMNSTVIRTHITAYKIQKMVESRSR
Ga0335081_119786851	3300032892	Soil	MVDGFMLKFFGELFYLIVALCALYGTWGLFRRYRQINSTVIKTHITAYELQKMVKSRSR
Ga0335077_110027542	3300033158	Soil	MVDGFTLKFLGELFYLIVALCALYGTWGLFSRYRKINSTVIRTHITAYRIQKMVESRPR
Ga0334722_100004607	3300033233	Sediment	MVDGFTLKFLGGLFYLLVALSAVYGLWSLFRASRAVNSTVIKTYITAYELRKMVASRSR
Ga0334722_1000146217	3300033233	Sediment	MVDGFMLKFLGELFYLIVALCALYGLWNFFRGYRAIHSTVIRTHIIAYELQKMVESRPR
Ga0334722_100307583	3300033233	Sediment	MVDVFMLKFLGELFYLIVALCALYAIWNLFSAYRAINSTVIKTHVTAYELQKMVESRSR
Ga0316605_103855612	3300033408	Soil	MVDGFMLKFLGKLFYVIVALSAIYGLWDLFRAYRAINSTVIKTHITAYELRKMIESRSR
Ga0316605_104218852	3300033408	Soil	MVDGFMLKFLGELFYVIVALSAIYGLWDLFRAYRAINSTVIKAHITAYELRKMVEGRSR
Ga0316619_102021653	3300033414	Soil	MLKFLGQLFYLIVALCALYGTWDLFRRYKKINSTVIKTHIAAYELQRMLEGRR
Ga0316601_1012538201	3300033419	Soil	MVDGFMLKFLGELFYLIVTLCALYGLWNLFRAYRTINSTVIKTHVTVYELQKMVESRSRQ
Ga0316601_1013764361	3300033419	Soil	MVDGFMLKFLGELFYLIVALSALYGLWDLVRAYRTINSTVIKTHITAYELRKMIESRSR
Ga0316601_1016315012	3300033419	Soil	MADTFMLKFLGQLFYLIVALCALYGTWDLFRRYKKINSTVIKTHIAAYELQRMLEGRR
Ga0316620_100013787	3300033480	Soil	MIDLKFLGELFYLGVALSTFYGTWGLFRRYKRINSTIIKAHITVYKLQKMVESRSR
Ga0316620_105301351	3300033480	Soil	MAEGFILKFLGELLYLIIALSALYGLWDLFRAYKAINSTVIKTHVTAYELRKIVESRSR
Ga0316620_121283012	3300033480	Soil	MADGFMLKFLGELFYLIVAVCAVYGIWDLSRAYRAINSTVIKTHITAYELRKMIGNRSR
Ga0316600_101983621	3300033481	Soil	MTDGFMLKFLGELFYLIVAICAVYGLWDLFRSYRAINSTVIKTHITAYELRKMVESRSR
Ga0316627_1001296972	3300033482	Soil	MLKFLGELFYLIVTLCALYGLWNLFRAYRTINSTVIKTHVTVYELQKMVESRSRQV
Ga0316626_116131101	3300033485	Soil	KFLGELFYLIVAVCAVYVLWDLSRSYRAINSTVIKTHITAYELRKMIGSRSR
Ga0316624_103220713	3300033486	Soil	MLKFFGGIFYLIVALSALYGLWDLFRAYRAINSTVIKTHATAYELRKMIGSRSR
Ga0316624_104902973	3300033486	Soil	MADGLMLKFFGGLFYLIVALSALYGLWDLFRAYRAINSTVIKTYATAYELRKMVENRVRQ
Ga0316624_106809442	3300033486	Soil	NKMVNVFMLKFLGELFYLIVSLFALYGLWDLFRAYRAINSTVIKTHITAYELRKMVEGRARQV
Ga0316624_107475342	3300033486	Soil	MVDGFMLKFVGELFYLIVALCALYGLWGLFRRYRQINSTVIKTHITAYALQKMVESRSR
Ga0316624_110066001	3300033486	Soil	LLGGLFYLVVAACAVYGIWDLSRTYRAINSTVIKTHITAYELRKMVESRPR
Ga0316624_110482042	3300033486	Soil	MADGFMLKFFGELFYLIVALCAIYGLWNLFREYRAINSTVIKAHIAAYRLQKMIEGRVRQ
Ga0316630_102264201	3300033487	Soil	FYLIVAICAVYGLWDLFRSYRAINSTVIKTHITAYELRKMIGSRPR
Ga0299912_100175288	3300033489	Soil	MVDVFMLKFLGGLFYLIVAICALYGLRDFVNAYRKINSTVIKTHIAAYELRKMIEGRARQ
Ga0316628_1000128058	3300033513	Soil	MVDGLMLKFFGELFYLIVASCALYGLWGLFRGYRKINSTIIKTHIAAYELQKMIESRSRRYI
Ga0316628_1001115552	3300033513	Soil	MVDGFMLKFLGELFYLIVAVCALYGTWGLFRRYRKINSTVIKTHIIAYELQKMVEGRSR
Ga0316628_1001792603	3300033513	Soil	MVDGFMLKFLGELFYLIVALCALYGTWCLFRRYRKINSTIIKAHITAYELQKMVESRSR
Ga0316628_1004239472	3300033513	Soil	MVDVFMLKFFGGLFYLIVALCAFYGLWDLFREYRAINSTVIKTHITAYELRKMIESRSR
Ga0316628_1007217221	3300033513	Soil	MLKFLGGLFYLVVAACAVYGIWDLSRTYRAINSTVIKTHITAYELRKMVESRPR
Ga0316628_1008995451	3300033513	Soil	MGDGFMLKFLGELFYLIVALCALYGTWGLFRRYRKINSTVIKTHITAYELQKMVESRSR
Ga0316628_1010424683	3300033513	Soil	MADGFMLKFLGELFYLIVTLSALYGIWDLFRAYKAVNSTVIKAHITAYELRKMVETRARQ
Ga0316628_1019274571	3300033513	Soil	MVDGFMLKFLGELFYLIVALCALYGTWGLFRRYRRINSTVIKTHITAYELQKMVESRSR
Ga0316628_1019287272	3300033513	Soil	MVNGFMLKFLGELFYLIVAICAVYGIWDLFRAYRAINSTVIKTHITAYELRKMIGSRSR
Ga0316628_1028593292	3300033513	Soil	MTDGFMLKFFGELFYLSVALCALYGLWDLFRAYRAINSTVIKTHITAYRLQKMVEGRARQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099501

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences