3300025154: Soil microbial communities from Rifle, Colorado, USA - Groundwater F2

Overview

Basic Information

• IMG/M Taxon OID: 3300025154
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0054641 | Ga0209417
• Sample Name: Soil microbial communities from Rifle, Colorado, USA - Groundwater F2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 785025171
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Congzhengia → Congzhengia minquanensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → planetary subsurface zone → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024951	Metagenome	203	Y
F033383	Metagenome / Metatranscriptome	177	Y
F038572	Metagenome / Metatranscriptome	165	Y
F047762	Metagenome	149	Y
F048726	Metagenome / Metatranscriptome	147	Y
F057792	Metagenome	135	Y
F059139	Metagenome	134	Y
F059221	Metagenome	134	Y
F069002	Metagenome / Metatranscriptome	124	Y
F071896	Metagenome / Metatranscriptome	121	N
F071990	Metagenome / Metatranscriptome	121	Y
F074912	Metagenome / Metatranscriptome	119	N
F084915	Metagenome	111	Y
F091832	Metagenome / Metatranscriptome	107	Y
F095987	Metagenome	105	Y
F096266	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209417_1005455	All Organisms → cellular organisms → Bacteria	13996
Ga0209417_1021122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	4269
Ga0209417_1037497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2713
Ga0209417_1068437	Not Available	1714
Ga0209417_1069954	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1685
Ga0209417_1089591	Not Available	1398
Ga0209417_1136048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Congzhengia → Congzhengia minquanensis	1013
Ga0209417_1151780	Not Available	931
Ga0209417_1161028	Not Available	890
Ga0209417_1170897	Not Available	851
Ga0209417_1178857	Not Available	821
Ga0209417_1196423	Not Available	764
Ga0209417_1210196	All Organisms → cellular organisms → Bacteria	727
Ga0209417_1216774	Not Available	710
Ga0209417_1267914	Not Available	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209417_1005455	Ga0209417_10054558	F024951	MRKVTIKLEMRIVMSVNEGVEISEVVNELDYQVNDTTTAADILDTEITGYEVVDSA
Ga0209417_1021122	Ga0209417_10211226	F096266	MIDARLVFLLLTALLLLILVAIAVATFRKKRKQKLEDPKYRMLEDD
Ga0209417_1021753	Ga0209417_10217532	F091832	LKIEDDSIERKKGETDMNNIFYIIGVIVVVLFVLGYFGLR
Ga0209417_1037497	Ga0209417_10374978	F071990	CNSCKSRLAAIASEAVVSTGSGNEADFGTVDISGGAANSGVQTILWDVTADGGNTKVETFKLWLSSNGFDQAGSVIKMQPLSGGDQASPSNTQNYVANAVVGSYTWATMPETEPAQNVWPTDEGADMVLSTTSDDVVMWAMYAAIAASETTGTYKGTDAGYELQFSFKYSYS
Ga0209417_1053559	Ga0209417_10535591	F047762	MWQSVLRKAAQHIVHPTGGSRRVFGQFSWLGVVSVKAALSRLAHQRVTLTVSHFN
Ga0209417_1068437	Ga0209417_10684373	F033383	SSVGNGVSMKAIVDLAPVMDAFIAMRKDELIVWNSIKRTYYVRKGIDLDVYSPLEGVTERLSGEPAVLYVENWRGQRNPLYLCVAMQEVWKRYPNARLHLYNLTDKRMKDTFSALVQNNKWWTFVRSLQGPVQDVNTLYNRVDMVVSGLYPLYARGIEAFGAGKAFIGPGYREDGYPWTCELQPESIAATIIKCWENYGQVNYRQWAIDHHNVADTVKESIAIYERYL
Ga0209417_1069954	Ga0209417_10699541	F059221	MAQAGAPKPPRVLVAPSNPAWCPIKKSLSRSRVALLSSAALRLADQRPFLLREDLTYRLVPSDPAA
Ga0209417_1089591	Ga0209417_10895912	F071896	MAKTTKSNEFNTIDPDRKVRIINNSNSKIYWTQLNGRPINLMKIAAPASLPYVELENMAYTSDLIQTGDIYVPDKDIFDALGIINLKHEDIKLHSELKRMLANLDAEELKEEISKLPDGNKELLAELAIDEYSNLKGSVIDTIEDETKVKISLMKEDEKANKENQDKNKK
Ga0209417_1136048	Ga0209417_11360482	F048726	SLTANEIEQNVELNMAFINLIVNDSINIVTLSFDIASASAANNLMVLKAGESRTNIAVPFKKLYYKAAADASAMRIEGLAKAEF
Ga0209417_1151780	Ga0209417_11517802	F048726	MTNFIGRSLTANIAEQNVELNMAFINLIINDSVNTITLSFDVASASAGGNLMVFKAGEQRTNISVPFKKLYYKADADTSAMRIEGLAKAPF
Ga0209417_1161028	Ga0209417_11610281	F069002	MNYAELAQAICDWSNKSSIDKVLPTVIRFGQRDLEDDLRIRPMEYHPTTANVAAAAALLALPSDYLEMIYLLLIKDGVRYPITVRSSPVEMYSTQISTTETGTPCRASRIADDLVFDVLLDTAYTRDWCYYRRLPVLTASTTGTPIPNTNWWSENAEEALLMSCLNKYVSGIPEGDKKKWADAALETREKLKFKEARETTGGNVLRSTPFSL
Ga0209417_1170897	Ga0209417_11708973	F059139	KKKSPVEVVFEQAEKLRAEIAEAEEELAAKKRQLQKFEEAKKLFEAL
Ga0209417_1178857	Ga0209417_11788572	F057792	MTAKSNTRELHIASINALLVKHGAKLDRYGTYKLGNYKFDTRAVNLKIFSGKIKIKSTPMMKVDLELLERLLKIYEKEVESXCKPQKKLKLIGKVQTKKLN
Ga0209417_1187743	Ga0209417_11877433	F074912	KSSVVMVPFNQMRDLHTLALAALRSGDVLAVTKEKYVVQFIREGLQHQLPLINMQLKKKGMRAISLKSLKK
Ga0209417_1196423	Ga0209417_11964232	F084915	MMKELKGWLINEINSINIDYHNESTYAWSKGYKKSLLETLDTIKRIEKNKSNTKKX
Ga0209417_1210196	Ga0209417_12101962	F095987	AALFLDYHLSQEASEIMVKNQGRWAPRKDVKWTVEPEGELHVVSALEWGRKMRQTVEFFSRTIGQ
Ga0209417_1216774	Ga0209417_12167742	F084915	MEELKQWLINEINNSICENYHNESTLMWNKGYRKACLETLDAIKKIESKN
Ga0209417_1267914	Ga0209417_12679143	F038572	MAVNAVLIHNVGVDDGAPAVLAGVTVIVPVALTDPQPPVSGMV