Sample 3300020714

Basic Information
IMG/M Taxon OID	3300020714 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0053455 \| Ga0214182
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300020714 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0053455 | Ga0214182

Sample Name

Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	116879832
Sequencing Scaffolds	29
Novel Protein Genes	35
Associated Families	33

Dataset Contents

Total Genome Size

116879832

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12
All Organisms → cellular organisms → Bacteria	1
Not Available	11
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F013732	Metagenome / Metatranscriptome	268	Y
F013852	Metagenome / Metatranscriptome	267	N
F017967	Metagenome	237	Y
F020864	Metagenome / Metatranscriptome	221	Y
F021463	Metagenome	218	Y
F023294	Metagenome / Metatranscriptome	210	Y
F024029	Metagenome	207	Y
F024945	Metagenome	203	Y
F025024	Metagenome / Metatranscriptome	203	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214182_1000457	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15916	Open in IMG/M
Ga0214182_1000499	All Organisms → cellular organisms → Bacteria	14974	Open in IMG/M
Ga0214182_1000621	Not Available	12814	Open in IMG/M
Ga0214182_1001818	Not Available	5627	Open in IMG/M
Ga0214182_1002645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4226	Open in IMG/M
Ga0214182_1003558	All Organisms → Viruses → Predicted Viral	3417	Open in IMG/M
Ga0214182_1004184	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3040	Open in IMG/M
Ga0214182_1005710	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2472	Open in IMG/M
Ga0214182_1006355	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2295	Open in IMG/M
Ga0214182_1010387	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1620	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214182_1000457

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

15916

Open in IMG/M

Ga0214182_1000499

All Organisms → cellular organisms → Bacteria

14974

Open in IMG/M

Ga0214182_1000621

Not Available

12814

Open in IMG/M

Ga0214182_1001818

Not Available

5627

Open in IMG/M

Ga0214182_1002645

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

4226

Open in IMG/M

Ga0214182_1003558

All Organisms → Viruses → Predicted Viral

3417

Open in IMG/M

Ga0214182_1004184

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

3040

Open in IMG/M

Ga0214182_1005710

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2472

Open in IMG/M

Ga0214182_1006355

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2295

Open in IMG/M

Ga0214182_1010387

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

1620

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214182_1000457	Ga0214182_100045734	F058718	MMVSCYGSEFEIPDLLIEKFVFDFNALPGSGYREGVQQLRDAIEEILDVVAQEPDILEEPEYRTDFLRALAMKQAMNKLGILYDA
Ga0214182_1000499	Ga0214182_100049912	F096596	MTHTEYAYIQAGYKFEKGKTQADTLRAMLEKEHPRDRTEARRLIEQGRAEARQH
Ga0214182_1000499	Ga0214182_100049914	F082373	MNYEAWIAEKVNSGKEVTISLCLLEKLMYEPAIKHWIESTAKKFGCKATIHWKDDVVTFYPVSAI
Ga0214182_1000499	Ga0214182_100049928	F050095	MDWIDIVVGGIVAIFIVGGCLALYADAVNHPWGEDDEH
Ga0214182_1000621	Ga0214182_100062110	F013852	MARSTFEGPILAGDNRFGPVRNVGYVDLVQTALLDFSVTTANTANYGGASGQFVASNNIPNSNATIYTPQSGVFSNTGPTAASAPTADASTIVYRGVVFYLPYGSNITDVILDIGTVPKDNAGTPLAVTAIQPYVSNNFATSTGVYGTFSNISSPAAQRYTATYVGSQLTNAISTLQDFQNLQAGQQPTWFSQVVVTLKMTTSSAGLSSGQVELTLRYNQSDLNIGNSTTYPYGNFD
Ga0214182_1001818	Ga0214182_100181810	F024029	CMNDHIWTAAGTDIEERWKAKYGWVRPSEQPEYQAKFKYYQELPLRKLDDEAKVQYEAVLRKAKVARVR
Ga0214182_1002645	Ga0214182_100264510	F013852	MGRSTFDGPILSGDNRFGPVRDVGYTDLVQTALLDFSVTSAGTNYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATNTVYRGVVFYLPYSCNITDVIFDVGTVPKDSAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLAMTTTAAGLSSGQVEVTLRYNQNDMNIGTSTTYPYGNFD
Ga0214182_1002782	Ga0214182_10027821	F088000	LIQTGFAENIAENINLADQNSIQAAFLESIAENIGVLDNNCVFGWFKINDNQNPQWGGVSVVIEEIAVFGGSTFGGIDFAGSMKSTRNESLPVGLTPAVVWSDVNTNESSNWAVVDNTQK
Ga0214182_1003558	Ga0214182_10035582	F095137	MPEKRQRKYPTKICPTCTKPFAKQGKYCCRACGNVRTFTPTYKAKISHGVRKKMNDDPEFKQATVNRILPDIPIPPQIESPMGLDQFIADGDLWTEV
Ga0214182_1004184	Ga0214182_10041842	F001774	MALRLSVQTQFGAPAPDAYARITNFFGTKDQVQVQVAIYYNEDARHQNLSTVREDAHYIAIEDLKGDLIPAIYSVLKTFSQYEGATDC
Ga0214182_1005710	Ga0214182_100571011	F025024	MMIDLSMTTDQKLDRMEFIAQSDEFLPEYESSIKSDALALIREIKDEVKEISLRTLIAVSKIRASNKDWKDLATYMLTA
Ga0214182_1006355	Ga0214182_10063552	F034483	MKIYVSGTANLGDFLNAMPVLSGVSKSYGKYSLIIKASMKKFKGIKEFLMYQDLFSDVEFDDDIIPYGDMIQLSSWPSRETKGDPDRPIETCRYENWLRDKYDLMFEVNDKFVVLTPEMDIEIKDAYYVGDRWAVGEIDNRRETHVLSYLKDCEFINFDNDMLTNAYIIKNLKKPFITNFTGVGMLADLCNVPLYCVWKAEDWKPEFRVGDNVSWDDGKDINKVFEKHFYLNRKAKLVHAKDLEALL
Ga0214182_1010387	Ga0214182_10103872	F035623	MSKYAYQIKGALENAAGEFKGLQVLVCDLHNFDIVDVPAEVLDHVTVKYLEFRLKITTMPIDIQRLPYGIQNRIRAPLGRWLDQWVQKEFYGNNLKSKNTNP
Ga0214182_1010485	Ga0214182_10104851	F055534	ELEAARILDLVRMGDDSVPWTAITWALWVLGDAVGN
Ga0214182_1013655	Ga0214182_10136551	F037123	MTIEKQGFGDNAVAIWDTNAADNETVGIMGNYHVECRDATGNLKWEESFPNLVNSIGKQLLLDTLLKG
Ga0214182_1015179	Ga0214182_10151791	F024945	NIHDAIYALNPAIVTISGDIAYDKNEQIVQYDLAQAQAKLVELQAQEAQAEQDAKDAKASALAKLTALGLTADEVKALIG
Ga0214182_1016417	Ga0214182_10164172	F058703	MLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFMEYDGRILNLSK
Ga0214182_1020924	Ga0214182_10209241	F029050	MSATFQPFGLKPAYHPSGLDRSVPFVGTNNYNLTSTTAGAYSAPYSLTGAQVAFYQYTPVAITTTGQLTIANQTAASGKVYG
Ga0214182_1022170	Ga0214182_10221703	F064047	MTLKKFSRAGLVAGALGILLGLFLSVASFDASYAQA
Ga0214182_1024207	Ga0214182_10242071	F017967	ATIGIVTRTKKNDLMAKIEMLPLLGMKEGAFWCYLNVPEDKPTQTATQATAPDLNDIESDIPF
Ga0214182_1025198	Ga0214182_10251981	F043282	IRSLFPTILKKSLYFNSVLAYTYCMMIEKEDKMKVNTGDVIRSYDFKPMVGREDCFVEGEVLALTNEQGYDAYKIRVTKDSWSDATDKGRVGKIVFVPVEVSFMEYAGRVINLSRI
Ga0214182_1029794	Ga0214182_10297942	F074309	AQISGFNNQILSGELVYQQKEFWNIQLENDTGFLPTTGATIDAQIIRRLLSNVMDTRNGLTFDIADYTPTPSPISLTITNRNDATGFFTLLMDESAWGTMASDPDLEINNVNGAGFSGRIKISFPANGTTPAQDIIIFLFFIVRSDGIVVE
Ga0214182_1032392	Ga0214182_10323921	F037639	GIDTSFLVATLTAAIQEQQALITDLTTRLTALEGK
Ga0214182_1032487	Ga0214182_10324873	F020864	MGYRSAADGVTQSGKTKGTNLGDDGKKIGIEGGKGKKGATTVTGQEMRKMGR
Ga0214182_1035542	Ga0214182_10355423	F021463	MSDQLETRVVRLEVYSKNHAEDIKELRETTIDLKGTMHSIEKNLSQIKYIAIGALVVIVAQTIGLDK
Ga0214182_1035730	Ga0214182_10357302	F013732	MPAINLPNGQSAILYSRDEISERIARSISRAYMKAAGTAAKLTASGFDDSKPETWAVFSEISEEDQNNLDGYQAELIVGMVKSWSFGDLPTTDSALDLPKATFEALAAACSDEFNGQIDLSPNIDPKALTAD
Ga0214182_1037105	Ga0214182_10371051	F058718	RQRGIGYGDITIIKEAPMMVSCYGSEFDIPDLLIEKFVFDFNALPGSGYREGVQQLRDAIDEILEIVAIEPEVLDEPEYRTDFVRALAMKQAMSKLGILYDA
Ga0214182_1038919	Ga0214182_10389191	F093142	MAIFDIFKRKNTKESNTLFGQTQLGNQIVRQTPKTQQGSNFQLLYVTTSSTTNAGRIVDMSVLSRNSTIMSCVGVIARALAQCSVSIMYKLDDGTFEDVLQ
Ga0214182_1039679	Ga0214182_10396791	F034813	MSYDADYEKVYMVEFESGRTIHVQFFDVEEVKEYCADNYAGDVIKSIYKEVY
Ga0214182_1040369	Ga0214182_10403691	F075594	MSSVFSVTRDQIITLALRKLGVLELGSVPDSETVANASLALNLYIKQMETEGLKLWTVNELVLPLVNNQTVYPIGPVSQVPDTALNTPKPLKIIQGWLRQITVQPPIDTPMQLLSQQEYNTLGSKFSTGVANSLYYEIRQNSGNLHVYLTPNYNAAYQYELHLTAQQPIEDINTGSSIPNFPAEWMNTLVWNLA
Ga0214182_1040818	Ga0214182_10408181	F068426	MVCLIKENMEKWSFVIRELKSLQQEFADDQPIVELFVEQKLLYGYNI
Ga0214182_1042314	Ga0214182_10423142	F093146	MYPTEIPSGAKTVTTHEGWTLSYSVDTTAPFAINAWNVTSPYPTNEPFWHQPHDLNGGDWSDEATAQAFADKWVDDNFVTPPAPTN
Ga0214182_1048013	Ga0214182_10480132	F023294	MAYSGTVGQTVVTVQNFIDQGARLAGKLAEELTIEQVQGSKQALFF
Ga0214182_1049174	Ga0214182_10491741	F064339	KIQIKTHGNRKMNQLANAFGQKFTENKDSLRIKSFELNGHTFKVKVPLTSETDAMFERVKIIDEDKAQKYYEDMSKEFLDNRAKYEADPDIKYLDDDIEVKGTSIKETSRNKVLTENRITELVRLLVPENKDFDMASISYADIEELFPFSIQMELIEQINSVISPNYTATKGK
Ga0214182_1051191	Ga0214182_10511911	F025431	SGTWSPNSYTPTGDHVWTDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTQQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSASGHYPDQQGLISTNMVVESISHDFQADPGTWHT

Showing 1 to 35 of 35 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020714: Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences