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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020714 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053455 | Ga0214182 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 14NOV2007 epilimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 116879832 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 35 |
| Associated Families | 33 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 12 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 11 |
| All Organisms → Viruses → Predicted Viral | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001774 | Metagenome / Metatranscriptome | 636 | Y |
| F013732 | Metagenome / Metatranscriptome | 268 | Y |
| F013852 | Metagenome / Metatranscriptome | 267 | N |
| F017967 | Metagenome | 237 | Y |
| F020864 | Metagenome / Metatranscriptome | 221 | Y |
| F021463 | Metagenome | 218 | Y |
| F023294 | Metagenome / Metatranscriptome | 210 | Y |
| F024029 | Metagenome | 207 | Y |
| F024945 | Metagenome | 203 | Y |
| F025024 | Metagenome / Metatranscriptome | 203 | Y |
| F025431 | Metagenome | 201 | N |
| F029050 | Metagenome / Metatranscriptome | 189 | Y |
| F034483 | Metagenome | 174 | Y |
| F034813 | Metagenome | 173 | Y |
| F035623 | Metagenome | 171 | Y |
| F037123 | Metagenome | 168 | Y |
| F037639 | Metagenome / Metatranscriptome | 167 | Y |
| F043282 | Metagenome / Metatranscriptome | 156 | Y |
| F050095 | Metagenome | 145 | N |
| F055534 | Metagenome | 138 | Y |
| F058703 | Metagenome / Metatranscriptome | 134 | Y |
| F058718 | Metagenome | 134 | Y |
| F064047 | Metagenome / Metatranscriptome | 129 | Y |
| F064339 | Metagenome | 128 | N |
| F068426 | Metagenome | 124 | Y |
| F074309 | Metagenome | 119 | N |
| F075594 | Metagenome | 118 | N |
| F082373 | Metagenome | 113 | N |
| F088000 | Metagenome | 109 | N |
| F093142 | Metagenome | 106 | Y |
| F093146 | Metagenome | 106 | N |
| F095137 | Metagenome | 105 | Y |
| F096596 | Metagenome | 104 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214182_1000457 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 15916 | Open in IMG/M |
| Ga0214182_1000499 | All Organisms → cellular organisms → Bacteria | 14974 | Open in IMG/M |
| Ga0214182_1000621 | Not Available | 12814 | Open in IMG/M |
| Ga0214182_1001818 | Not Available | 5627 | Open in IMG/M |
| Ga0214182_1002645 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4226 | Open in IMG/M |
| Ga0214182_1003558 | All Organisms → Viruses → Predicted Viral | 3417 | Open in IMG/M |
| Ga0214182_1004184 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3040 | Open in IMG/M |
| Ga0214182_1005710 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2472 | Open in IMG/M |
| Ga0214182_1006355 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2295 | Open in IMG/M |
| Ga0214182_1010387 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1620 | Open in IMG/M |
| Ga0214182_1010485 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1609 | Open in IMG/M |
| Ga0214182_1013655 | All Organisms → Viruses → Predicted Viral | 1334 | Open in IMG/M |
| Ga0214182_1015179 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1238 | Open in IMG/M |
| Ga0214182_1016417 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1169 | Open in IMG/M |
| Ga0214182_1020924 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 980 | Open in IMG/M |
| Ga0214182_1022170 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 941 | Open in IMG/M |
| Ga0214182_1025198 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 860 | Open in IMG/M |
| Ga0214182_1029794 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 762 | Open in IMG/M |
| Ga0214182_1032392 | Not Available | 720 | Open in IMG/M |
| Ga0214182_1032487 | Not Available | 718 | Open in IMG/M |
| Ga0214182_1035542 | Not Available | 672 | Open in IMG/M |
| Ga0214182_1035730 | Not Available | 670 | Open in IMG/M |
| Ga0214182_1037105 | Not Available | 653 | Open in IMG/M |
| Ga0214182_1039679 | Not Available | 624 | Open in IMG/M |
| Ga0214182_1040818 | Not Available | 611 | Open in IMG/M |
| Ga0214182_1042314 | Not Available | 596 | Open in IMG/M |
| Ga0214182_1048013 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 545 | Open in IMG/M |
| Ga0214182_1049174 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 536 | Open in IMG/M |
| Ga0214182_1051191 | Not Available | 521 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214182_1000457 | Ga0214182_100045734 | F058718 | MMVSCYGSEFEIPDLLIEKFVFDFNALPGSGYREGVQQLRDAIEEILDVVAQEPDILEEPEYRTDFLRALAMKQAMNKLGILYDA |
| Ga0214182_1000499 | Ga0214182_100049912 | F096596 | MTHTEYAYIQAGYKFEKGKTQADTLRAMLEKEHPRDRTEARRLIEQGRAEARQH |
| Ga0214182_1000499 | Ga0214182_100049914 | F082373 | MNYEAWIAEKVNSGKEVTISLCLLEKLMYEPAIKHWIESTAKKFGCKATIHWKDDVVTFYPVSAI |
| Ga0214182_1000499 | Ga0214182_100049928 | F050095 | MDWIDIVVGGIVAIFIVGGCLALYADAVNHPWGEDDEH |
| Ga0214182_1000621 | Ga0214182_100062110 | F013852 | MARSTFEGPILAGDNRFGPVRNVGYVDLVQTALLDFSVTTANTANYGGASGQFVASNNIPNSNATIYTPQSGVFSNTGPTAASAPTADASTIVYRGVVFYLPYGSNITDVILDIGTVPKDNAGTPLAVTAIQPYVSNNFATSTGVYGTFSNISSPAAQRYTATYVGSQLTNAISTLQDFQNLQAGQQPTWFSQVVVTLKMTTSSAGLSSGQVELTLRYNQSDLNIGNSTTYPYGNFD |
| Ga0214182_1001818 | Ga0214182_100181810 | F024029 | CMNDHIWTAAGTDIEERWKAKYGWVRPSEQPEYQAKFKYYQELPLRKLDDEAKVQYEAVLRKAKVARVR |
| Ga0214182_1002645 | Ga0214182_100264510 | F013852 | MGRSTFDGPILSGDNRFGPVRDVGYTDLVQTALLDFSVTSAGTNYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATNTVYRGVVFYLPYSCNITDVIFDVGTVPKDSAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLAMTTTAAGLSSGQVEVTLRYNQNDMNIGTSTTYPYGNFD |
| Ga0214182_1002782 | Ga0214182_10027821 | F088000 | LIQTGFAENIAENINLADQNSIQAAFLESIAENIGVLDNNCVFGWFKINDNQNPQWGGVSVVIEEIAVFGGSTFGGIDFAGSMKSTRNESLPVGLTPAVVWSDVNTNESSNWAVVDNTQK |
| Ga0214182_1003558 | Ga0214182_10035582 | F095137 | MPEKRQRKYPTKICPTCTKPFAKQGKYCCRACGNVRTFTPTYKAKISHGVRKKMNDDPEFKQATVNRILPDIPIPPQIESPMGLDQFIADGDLWTEV |
| Ga0214182_1004184 | Ga0214182_10041842 | F001774 | MALRLSVQTQFGAPAPDAYARITNFFGTKDQVQVQVAIYYNEDARHQNLSTVREDAHYIAIEDLKGDLIPAIYSVLKTFSQYEGATDC |
| Ga0214182_1005710 | Ga0214182_100571011 | F025024 | MMIDLSMTTDQKLDRMEFIAQSDEFLPEYESSIKSDALALIREIKDEVKEISLRTLIAVSKIRASNKDWKDLATYMLTA |
| Ga0214182_1006355 | Ga0214182_10063552 | F034483 | MKIYVSGTANLGDFLNAMPVLSGVSKSYGKYSLIIKASMKKFKGIKEFLMYQDLFSDVEFDDDIIPYGDMIQLSSWPSRETKGDPDRPIETCRYENWLRDKYDLMFEVNDKFVVLTPEMDIEIKDAYYVGDRWAVGEIDNRRETHVLSYLKDCEFINFDNDMLTNAYIIKNLKKPFITNFTGVGMLADLCNVPLYCVWKAEDWKPEFRVGDNVSWDDGKDINKVFEKHFYLNRKAKLVHAKDLEALL |
| Ga0214182_1010387 | Ga0214182_10103872 | F035623 | MSKYAYQIKGALENAAGEFKGLQVLVCDLHNFDIVDVPAEVLDHVTVKYLEFRLKITTMPIDIQRLPYGIQNRIRAPLGRWLDQWVQKEFYGNNLKSKNTNP |
| Ga0214182_1010485 | Ga0214182_10104851 | F055534 | ELEAARILDLVRMGDDSVPWTAITWALWVLGDAVGN |
| Ga0214182_1013655 | Ga0214182_10136551 | F037123 | MTIEKQGFGDNAVAIWDTNAADNETVGIMGNYHVECRDATGNLKWEESFPNLVNSIGKQLLLDTLLKG |
| Ga0214182_1015179 | Ga0214182_10151791 | F024945 | NIHDAIYALNPAIVTISGDIAYDKNEQIVQYDLAQAQAKLVELQAQEAQAEQDAKDAKASALAKLTALGLTADEVKALIG |
| Ga0214182_1016417 | Ga0214182_10164172 | F058703 | MLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFMEYDGRILNLSK |
| Ga0214182_1020924 | Ga0214182_10209241 | F029050 | MSATFQPFGLKPAYHPSGLDRSVPFVGTNNYNLTSTTAGAYSAPYSLTGAQVAFYQYTPVAITTTGQLTIANQTAASGKVYG |
| Ga0214182_1022170 | Ga0214182_10221703 | F064047 | MTLKKFSRAGLVAGALGILLGLFLSVASFDASYAQA |
| Ga0214182_1024207 | Ga0214182_10242071 | F017967 | ATIGIVTRTKKNDLMAKIEMLPLLGMKEGAFWCYLNVPEDKPTQTATQATAPDLNDIESDIPF |
| Ga0214182_1025198 | Ga0214182_10251981 | F043282 | IRSLFPTILKKSLYFNSVLAYTYCMMIEKEDKMKVNTGDVIRSYDFKPMVGREDCFVEGEVLALTNEQGYDAYKIRVTKDSWSDATDKGRVGKIVFVPVEVSFMEYAGRVINLSRI |
| Ga0214182_1029794 | Ga0214182_10297942 | F074309 | AQISGFNNQILSGELVYQQKEFWNIQLENDTGFLPTTGATIDAQIIRRLLSNVMDTRNGLTFDIADYTPTPSPISLTITNRNDATGFFTLLMDESAWGTMASDPDLEINNVNGAGFSGRIKISFPANGTTPAQDIIIFLFFIVRSDGIVVE |
| Ga0214182_1032392 | Ga0214182_10323921 | F037639 | GIDTSFLVATLTAAIQEQQALITDLTTRLTALEGK |
| Ga0214182_1032487 | Ga0214182_10324873 | F020864 | MGYRSAADGVTQSGKTKGTNLGDDGKKIGIEGGKGKKGATTVTGQEMRKMGR |
| Ga0214182_1035542 | Ga0214182_10355423 | F021463 | MSDQLETRVVRLEVYSKNHAEDIKELRETTIDLKGTMHSIEKNLSQIKYIAIGALVVIVAQTIGLDK |
| Ga0214182_1035730 | Ga0214182_10357302 | F013732 | MPAINLPNGQSAILYSRDEISERIARSISRAYMKAAGTAAKLTASGFDDSKPETWAVFSEISEEDQNNLDGYQAELIVGMVKSWSFGDLPTTDSALDLPKATFEALAAACSDEFNGQIDLSPNIDPKALTAD |
| Ga0214182_1037105 | Ga0214182_10371051 | F058718 | RQRGIGYGDITIIKEAPMMVSCYGSEFDIPDLLIEKFVFDFNALPGSGYREGVQQLRDAIDEILEIVAIEPEVLDEPEYRTDFVRALAMKQAMSKLGILYDA |
| Ga0214182_1038919 | Ga0214182_10389191 | F093142 | MAIFDIFKRKNTKESNTLFGQTQLGNQIVRQTPKTQQGSNFQLLYVTTSSTTNAGRIVDMSVLSRNSTIMSCVGVIARALAQCSVSIMYKLDDGTFEDVLQ |
| Ga0214182_1039679 | Ga0214182_10396791 | F034813 | MSYDADYEKVYMVEFESGRTIHVQFFDVEEVKEYCADNYAGDVIKSIYKEVY |
| Ga0214182_1040369 | Ga0214182_10403691 | F075594 | MSSVFSVTRDQIITLALRKLGVLELGSVPDSETVANASLALNLYIKQMETEGLKLWTVNELVLPLVNNQTVYPIGPVSQVPDTALNTPKPLKIIQGWLRQITVQPPIDTPMQLLSQQEYNTLGSKFSTGVANSLYYEIRQNSGNLHVYLTPNYNAAYQYELHLTAQQPIEDINTGSSIPNFPAEWMNTLVWNLA |
| Ga0214182_1040818 | Ga0214182_10408181 | F068426 | MVCLIKENMEKWSFVIRELKSLQQEFADDQPIVELFVEQKLLYGYNI |
| Ga0214182_1042314 | Ga0214182_10423142 | F093146 | MYPTEIPSGAKTVTTHEGWTLSYSVDTTAPFAINAWNVTSPYPTNEPFWHQPHDLNGGDWSDEATAQAFADKWVDDNFVTPPAPTN |
| Ga0214182_1048013 | Ga0214182_10480132 | F023294 | MAYSGTVGQTVVTVQNFIDQGARLAGKLAEELTIEQVQGSKQALFF |
| Ga0214182_1049174 | Ga0214182_10491741 | F064339 | KIQIKTHGNRKMNQLANAFGQKFTENKDSLRIKSFELNGHTFKVKVPLTSETDAMFERVKIIDEDKAQKYYEDMSKEFLDNRAKYEADPDIKYLDDDIEVKGTSIKETSRNKVLTENRITELVRLLVPENKDFDMASISYADIEELFPFSIQMELIEQINSVISPNYTATKGK |
| Ga0214182_1051191 | Ga0214182_10511911 | F025431 | SGTWSPNSYTPTGDHVWTDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTQQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSASGHYPDQQGLISTNMVVESISHDFQADPGTWHT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |