3300014055: Sewage treatment plant microbial communities from Vermont, USA - ANOX_W

Overview

Basic Information

• IMG/M Taxon OID: 3300014055
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116849 | Gp0137220 | Ga0119878
• Sample Name: Sewage treatment plant microbial communities from Vermont, USA - ANOX_W
• Sequencing Status: Permanent Draft
• Sequencing Center: Norwich University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 417698152
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Crateriforma → Crateriforma conspicua	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sewage Treatment Plant Microbial Communities From Vermont, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant → Sewage Treatment Plant Microbial Communities From Vermont, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Vermont
• Coordinates
  • Lat. (^o): 43.727094
  • Long. (^o): -72.425964
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000676	Metagenome / Metatranscriptome	941	Y
F001844	Metagenome / Metatranscriptome	627	Y
F002571	Metagenome / Metatranscriptome	547	Y
F003544	Metagenome / Metatranscriptome	480	Y
F010528	Metagenome / Metatranscriptome	302	Y
F012885	Metagenome / Metatranscriptome	276	Y
F020930	Metagenome / Metatranscriptome	221	Y
F021521	Metagenome / Metatranscriptome	218	Y
F021596	Metagenome / Metatranscriptome	218	Y
F025842	Metagenome / Metatranscriptome	200	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119878_1002986	All Organisms → cellular organisms → Bacteria → Proteobacteria	5429
Ga0119878_1009459	All Organisms → cellular organisms → Bacteria → Proteobacteria	2747
Ga0119878_1015378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2123
Ga0119878_1024558	Not Available	1660
Ga0119878_1026075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1607
Ga0119878_1042098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1244
Ga0119878_1049165	Not Available	1145
Ga0119878_1059740	All Organisms → cellular organisms → Bacteria	1027
Ga0119878_1060550	Not Available	1020
Ga0119878_1067713	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	957

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119878_1002986	Ga0119878_10029861	F012885	MPYRIRWEGHGVYRRFYGVVTRQEFRDAYEEMCGDVRYEGIRYIISDYLEALPDPDLTERDLRAQARLERLRFYDSPDTVQAMIGTDPEIVEYIRYYESLRVSPHCLGYFATVADARRWIAGNPRHGWSRPPASAASGPTAPHR*
Ga0119878_1009459	Ga0119878_10094594	F028103	MPLSLSLPAVESRPANPPEIRLAKVSPWLDECLKREPIIAARVIGDALAATNRVAMSDSKRLDLAERYWDAAGLLWLPLERQFVRASHPLSGEALEAAKAALTLSNELAVAYKHLLASEADKRLSMGGQRLLVALVHRCLQGTTRVLVNSYLSYAPVPPRTWHDAHLIYAFARERNIHLIPVAPDQPEATPDRLTIQMLLLALANPYGFLPGQLPIVLRYVQEYAHWAKLTDIAPVHRMAKAVAIVPVGHDFPPFSANKGGSIEGSKLFLLTFDLAFQIQEQLRALEAGGDVPAG
Ga0119878_1015378	Ga0119878_10153783	F020930	EDKFGSGGMVELDTGNARYLIRFTQTLEQQAGWSWAMFNAVRMLSG*
Ga0119878_1024558	Ga0119878_10245582	F097376	MKKAVSPKKNKTAADGVPQEKKQTKTGPVELDLADLKKVSGGLPNGTWNRVK*
Ga0119878_1026075	Ga0119878_10260752	F000676	RIACAVAAKVRIGLSRICFELTQKDVGDATFEVGGSEQIEVYAVADGPRTRRRIPDEHDSLAASLSSFSDPMWQVKDRSIAGLRIAASGGIGQALTLGALVAVRQSDLSDWVLGVVRRLNKVSNDEVEAGMSIIADRLVPVTLHAVRQAKDDMGFVVDGIDVSTMGARFHGLYLPPPSRPDKPLAVKTLIVPTQEYAEGRSVILTTGRSVYTVALRHLVEQRADWSWTAVQIVEKKSRV*
Ga0119878_1042098	Ga0119878_10420982	F021521	MAGYSHRTAQPPILAVFLPWGVSAGAGRIRPASAKVRVLIF*
Ga0119878_1049165	Ga0119878_10491652	F025842	MSIETHIPARDPRTALVREKYFSLRPKPLERWLWQQGLPQAAERVFWVHWEEGMKAGDWCSQIPLRLVASLCCVDSSTVTRAYQVLKKLDLIRREDPGRDPGNPFQQATAITEVRIPRELLTELSREPNRPQRRQDEEGGDQRHAAASTRAAPASGAVA
Ga0119878_1059740	Ga0119878_10597403	F050494	RGRYAGRTFIPEGPLPDTEGLAELVIIPAPPRPRGSVADAFGTATVLRSGDDILAQIRAERDEWGDR*
Ga0119878_1060550	Ga0119878_10605501	F039794	MTVHAVLPSAFLYSVGAPDIQHFAAQYPARRFPCQRFDAALASDAA*
Ga0119878_1067713	Ga0119878_10677132	F010528	MFKRIFDEYRKAVESSFEMQRELYRQWMNGWPVKPPQGAAGPSASDVKEQIHSYQKKWSRTLAETMERHREALNEQYKSGIEAIQTAFQTTEAKTPEEYWRLTQEFWRKSIDSYKTAYESQSKYLQSLAEMWLEMVTRGKV*
Ga0119878_1080634	Ga0119878_10806341	F064854	GTLLYAEFGALSGLDAPEARFLHSAVRDAVRMAKRNGNYSARFHNYRVGAWREPLGSRLVTVTWRVSLYDRPLFGDTEILKAPLCAAV*
Ga0119878_1082007	Ga0119878_10820072	F038871	MFGFLTSGTKDVADPLVSAKSVAAWLRQLPPLDVIGRQQQVMRAFDAMRQSRKPVDLARVQAVEYLDAALG
Ga0119878_1091914	Ga0119878_10919141	F026489	MRSARKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0119878_1095133	Ga0119878_10951331	F001844	GQVEALLRIDGRVEPIIAELTRQYTQNYQKSTNIESRLWHSVFDLVKAFIAAYGIALKAGYPRADNKRWRAILPWVIVRLAHYRGLDGKYRLFRYSHWIPAQWREFHELYEFARMRGWQREQLIFGVGAFAKPGVSFEQEYLKTLLLMRLDSGNFTPDQVEWVARQLEDWTPTLALTPPPSEGAPFFVDLTGTTGLRRRDRAQAGGRVMFLDAAPIYARVVERMRWLPEQDSELPKAGELPAREQRLLLMRLASLFGLDAIAQA
Ga0119878_1114627	Ga0119878_11146272	F075045	VHFPDGTNHGTTSMMVDHHSTNVTSGRYSGSGDAGTFNMSLSPMWDRPASIGTVAGVYTRSTSNGYTMTMTMSANGQLTASDSRGCVINGSVGVPDATHNLYRIDATVTSCGSLDGTYSGMGALLDADAMQDWMTAMHPLEHGGHSHGGSMMGGSPMMGRNTVPTGQRNLFMFSLVNSQNAMMDALAR*
Ga0119878_1116860	Ga0119878_11168601	F054132	GNRFFVHEKVYDAFAAKLAERIWQAIYDLSQGFMYSYQTALEEALRQSQNARWKPLTPLLFARLIHYYGTDAKLRVFRFERWIPAKWMDLHRTYLRASELGIERQSAVLGSAGPNATPWTVEQEFLNVLLIHQLNTGNMSPPQLDWAMSQLRAWSRRLALDAGPRTPEGFFVVLAGKTGLGRRTGQDSGSMLRYLDTTPLAESLERAISALRQAEATDQGLSTLEAVARALQAMEG
Ga0119878_1128702	Ga0119878_11287021	F003544	AATAYKAALVVLLFDRGISGKIAGQEIRGLRAALPPDLPLVVSGRAVNLLAKPIADVHTAADFSSVMTRMRALGVLPAVPVSLVGILPDLPQRA*
Ga0119878_1129768	Ga0119878_11297681	F002571	MKNSNSADSPGSPHSAAPKLLGFFPWQQLKSKRISYFTLPLIIMATVVEFVILATGWKYQQKVCLPQGMGVTFFGIGPIGATILAVELLKLPLAVWTA
Ga0119878_1143668	Ga0119878_11436681	F050165	AVAGQVEHLDLVLVLTFWIVSEYRPMNPTIERALGASTPALRCLAVLDAMLVPALGLYWIKTLPATGGLVGAVLGVFCLWIGARRAYRALYEFEAYRWLTLRLAKLAIATWVVMAMVKLVWFIQGSL*
Ga0119878_1153555	Ga0119878_11535551	F078884	VQEAWVKRLPPGELRPMQRNGKKYFIYPDASRNQVYVGGPQEYDAYVQLHPDSRKDPQDAANKSSAYRKKQDETMRKATARDLSDPFLGVTWADLGW*
Ga0119878_1159503	Ga0119878_11595031	F044578	KAEYESAGFLLRQVLKEPVDPGVAPEREVNKLMKPTALADLDTQIKAKEAELLAVNNKRRERTAQVGEGAQKLRQEFDTRSRTKREEADRNRAELLAAYAAQEKEWKVEEKQIDTDLAGAVLNVDALRAEADAARKKAEGYYEAREAAIRHTQVHRIATTVEIVRGLILGERPMSITASAKERGDILTDQISMVRISV
Ga0119878_1178143	Ga0119878_11781433	F021596	MHEVREFAGHADIRTTEVYFVRKEEDAEVAARRIQIRGTGRKGE*
Ga0119878_1179146	Ga0119878_11791461	F084124	LLFGGLNKQAKAFARAIKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF*
Ga0119878_1211195	Ga0119878_12111951	F057612	LTAQAEAQQAAAQAQWQAEAEEKTRAAVEHFKGLLARAEIERDEAKQFAAEGFRQVQNLEKKLTDASSLLAGWKNGKSAVASPGWEG*