Metagenome Family F078884

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078884
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	89 residues
Representative Sequence	RPMQRTGKKYFIYPDSSRNQVYVGGPKEYETYVQLHPEHRVADAQEAQKAASAYRMKQADAMRKATARDLSDPFLGVSWADLGW
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.75 %
% of genes near scaffold ends (potentially truncated)	94.83 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.138 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (10.345 % of family members)
Environment Ontology (ENVO)	Unclassified (45.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.71% β-sheet: 8.93% Coil/Unstructured: 55.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13091	PLDc_2	6.03
PF04392	ABC_sub_bind	4.31
PF01261	AP_endonuc_2	2.59
PF00583	Acetyltransf_1	1.72
PF01594	AI-2E_transport	1.72
PF13441	Gly-zipper_YMGG	1.72
PF01814	Hemerythrin	1.72
PF13899	Thioredoxin_7	0.86
PF07885	Ion_trans_2	0.86
PF00484	Pro_CA	0.86
PF07883	Cupin_2	0.86
PF12974	Phosphonate-bd	0.86
PF00931	NB-ARC	0.86
PF07690	MFS_1	0.86
PF03881	Fructosamin_kin	0.86
PF00689	Cation_ATPase_C	0.86
PF00326	Peptidase_S9	0.86
PF09955	DUF2189	0.86
PF00702	Hydrolase	0.86
PF02321	OEP	0.86
PF06580	His_kinase	0.86
PF00313	CSD	0.86
PF00939	Na_sulph_symp	0.86
PF00211	Guanylate_cyc	0.86
PF13396	PLDc_N	0.86
PF13302	Acetyltransf_3	0.86
PF00535	Glycos_transf_2	0.86
PF06742	DUF1214	0.86
PF08281	Sigma70_r4_2	0.86
PF01734	Patatin	0.86
PF00497	SBP_bac_3	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.31
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.72
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.86
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.86
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.86
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	0.86
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.86
COG3001	Fructosamine-3-kinase	Carbohydrate transport and metabolism [G]	0.86
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.86
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.86
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.86
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.86
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.93 %
Unclassified	root	N/A	25.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	37.93 %
Unclassified	root	N/A	25.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	19.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.90 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	4.31 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	4.31 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.59 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.86 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.72 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Curvibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Lamprocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis	0.86 %
Thiodictyon	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	1.72 %
Candidatus Thiodictyon syntrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	0.86 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.86 %
unclassified Curvibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter	0.86 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.86 %
Lamprocystis purpurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	0.86 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Variovorax sp. YR216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	1.72 %
Curvibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp.	0.86 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.86 %
Candidatus Thiodictyon syntrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	0.86 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.86 %
Lamprocystis purpurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	0.86 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320006\|FACEOR_FYWIORV02I13DH	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	511	Open in IMG/M
2162886012\|MBSR1b_contig_9888438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	829	Open in IMG/M
3300001213\|JGIcombinedJ13530_108836506	Not Available	545	Open in IMG/M
3300001978\|JGI24747J21853_1013251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	850	Open in IMG/M
3300003995\|Ga0055438_10288239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	513	Open in IMG/M
3300004050\|Ga0055491_10218724	Not Available	522	Open in IMG/M
3300004156\|Ga0062589_101168641	Not Available	734	Open in IMG/M
3300004463\|Ga0063356_103244622	Not Available	701	Open in IMG/M
3300004480\|Ga0062592_102126713	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300004778\|Ga0062383_10615225	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300005329\|Ga0070683_100015843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	6630	Open in IMG/M
3300005347\|Ga0070668_100477078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1076	Open in IMG/M
3300005353\|Ga0070669_101570442	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300005355\|Ga0070671_100079122	All Organisms → cellular organisms → Bacteria → Proteobacteria	2748	Open in IMG/M
3300005367\|Ga0070667_100190200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1818	Open in IMG/M
3300005526\|Ga0073909_10509890	Not Available	583	Open in IMG/M
3300005539\|Ga0068853_100090120	All Organisms → cellular organisms → Bacteria → Proteobacteria	2695	Open in IMG/M
3300005563\|Ga0068855_101285915	Not Available	758	Open in IMG/M
3300005575\|Ga0066702_10888785	Not Available	531	Open in IMG/M
3300005615\|Ga0070702_100090484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1855	Open in IMG/M
3300005616\|Ga0068852_102001463	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005833\|Ga0074472_10749215	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300005841\|Ga0068863_100160261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2155	Open in IMG/M
3300005841\|Ga0068863_101614108	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005842\|Ga0068858_100043647	All Organisms → cellular organisms → Bacteria → Proteobacteria	4158	Open in IMG/M
3300005842\|Ga0068858_100618835	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300005842\|Ga0068858_100755525	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300005842\|Ga0068858_102137572	Not Available	553	Open in IMG/M
3300006196\|Ga0075422_10555296	Not Available	527	Open in IMG/M
3300006237\|Ga0097621_100472382	All Organisms → cellular organisms → Bacteria → Proteobacteria	1132	Open in IMG/M
3300006358\|Ga0068871_100324708	All Organisms → cellular organisms → Bacteria → Proteobacteria	1356	Open in IMG/M
3300006358\|Ga0068871_100677637	All Organisms → cellular organisms → Bacteria → Proteobacteria	943	Open in IMG/M
3300006797\|Ga0066659_10448138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1025	Open in IMG/M
3300006903\|Ga0075426_10177311	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300007076\|Ga0075435_100664189	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300009148\|Ga0105243_11035361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	825	Open in IMG/M
3300009174\|Ga0105241_12063681	Not Available	562	Open in IMG/M
3300009177\|Ga0105248_12132797	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300009177\|Ga0105248_12395173	Not Available	601	Open in IMG/M
3300010412\|Ga0136852_10951856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	818	Open in IMG/M
3300012198\|Ga0137364_10816376	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300012212\|Ga0150985_119036952	Not Available	607	Open in IMG/M
3300012354\|Ga0137366_10777148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	680	Open in IMG/M
3300012469\|Ga0150984_104885343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1335	Open in IMG/M
3300012469\|Ga0150984_109463725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp.	603	Open in IMG/M
3300012519\|Ga0157352_1072473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	560	Open in IMG/M
3300012951\|Ga0164300_10122649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1177	Open in IMG/M
3300012986\|Ga0164304_10083581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1854	Open in IMG/M
3300012989\|Ga0164305_10825844	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300013297\|Ga0157378_11313381	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300014055\|Ga0119878_1153555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	608	Open in IMG/M
3300014969\|Ga0157376_11883461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	635	Open in IMG/M
3300014969\|Ga0157376_12526686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	553	Open in IMG/M
3300015077\|Ga0173483_10311153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	775	Open in IMG/M
3300015200\|Ga0173480_10017432	All Organisms → cellular organisms → Bacteria → Proteobacteria	2960	Open in IMG/M
3300015259\|Ga0180085_1147095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	706	Open in IMG/M
3300015371\|Ga0132258_10665789	All Organisms → cellular organisms → Bacteria → Proteobacteria	2619	Open in IMG/M
3300015373\|Ga0132257_100346719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1794	Open in IMG/M
3300015373\|Ga0132257_104300391	Not Available	518	Open in IMG/M
3300015374\|Ga0132255_100544681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	1710	Open in IMG/M
3300015374\|Ga0132255_103735486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	647	Open in IMG/M
3300017792\|Ga0163161_10324116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1219	Open in IMG/M
3300018060\|Ga0187765_10211155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1126	Open in IMG/M
3300018081\|Ga0184625_10330272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	794	Open in IMG/M
3300018084\|Ga0184629_10378564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300018433\|Ga0066667_11739201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	561	Open in IMG/M
3300018476\|Ga0190274_10049654	All Organisms → cellular organisms → Bacteria → Proteobacteria	3026	Open in IMG/M
3300025903\|Ga0207680_11315955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	514	Open in IMG/M
3300025906\|Ga0207699_11021360	Not Available	611	Open in IMG/M
3300025907\|Ga0207645_10555277	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	779	Open in IMG/M
3300025908\|Ga0207643_10000415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	28167	Open in IMG/M
3300025912\|Ga0207707_10474657	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300025924\|Ga0207694_11759413	Not Available	521	Open in IMG/M
3300025930\|Ga0207701_10374388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300025931\|Ga0207644_10811381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	783	Open in IMG/M
3300025960\|Ga0207651_11500584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	607	Open in IMG/M
3300025964\|Ga0210127_1022750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
3300026116\|Ga0207674_11462308	Not Available	653	Open in IMG/M
3300026121\|Ga0207683_11523884	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300026142\|Ga0207698_11782546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	631	Open in IMG/M
3300027877\|Ga0209293_10471623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	656	Open in IMG/M
3300027887\|Ga0208980_10810636	Not Available	523	Open in IMG/M
3300027897\|Ga0209254_10306340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1213	Open in IMG/M
3300028381\|Ga0268264_10012945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6860	Open in IMG/M
3300028381\|Ga0268264_10542729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1139	Open in IMG/M
3300031720\|Ga0307469_12112722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	548	Open in IMG/M
3300031834\|Ga0315290_11393323	Not Available	574	Open in IMG/M
3300031847\|Ga0310907_10576890	Not Available	610	Open in IMG/M
3300031873\|Ga0315297_10895883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	737	Open in IMG/M
3300031918\|Ga0311367_12065016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	549	Open in IMG/M
3300031938\|Ga0308175_102522133	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031997\|Ga0315278_11300369	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300032000\|Ga0310903_10727328	Not Available	538	Open in IMG/M
3300032003\|Ga0310897_10461142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	611	Open in IMG/M
3300032053\|Ga0315284_12462570	Not Available	508	Open in IMG/M
3300032118\|Ga0315277_10977868	Not Available	776	Open in IMG/M
3300032163\|Ga0315281_10777325	Not Available	990	Open in IMG/M
3300032163\|Ga0315281_11801824	Not Available	591	Open in IMG/M
3300032173\|Ga0315268_12300236	Not Available	553	Open in IMG/M
3300032205\|Ga0307472_102175204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	559	Open in IMG/M
3300032275\|Ga0315270_10765155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300033158\|Ga0335077_11594259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	621	Open in IMG/M
3300033412\|Ga0310810_10751382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	893	Open in IMG/M
3300033416\|Ga0316622_101432202	Not Available	807	Open in IMG/M
3300033418\|Ga0316625_102540904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300033419\|Ga0316601_102022758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	581	Open in IMG/M
3300033482\|Ga0316627_100441503	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300033483\|Ga0316629_11597384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	534	Open in IMG/M
3300033487\|Ga0316630_10173319	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300033513\|Ga0316628_100784191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300033521\|Ga0316616_100511318	All Organisms → cellular organisms → Bacteria → Proteobacteria	1380	Open in IMG/M
3300033521\|Ga0316616_103941327	Not Available	559	Open in IMG/M
3300034129\|Ga0370493_0229212	Not Available	625	Open in IMG/M
3300034176\|Ga0364931_0130543	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.90%
Host-Associated	Host-Associated	42.24%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	42.24%
Terrestrial	Environmental → Terrestrial	37.93%
Aquatic	Environmental → Aquatic	18.97%
Wastewater	Engineered → Wastewater	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.10%
Freshwater	Environmental → Aquatic → Freshwater	10.34%
Marine	Environmental → Aquatic → Marine	4.31%
Sediment	Environmental → Aquatic → Sediment	4.31%
Roots	Host-Associated → Plants → Roots	2.59%
Peat	Environmental → Terrestrial → Peat	0.86%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.62%
Lake	Environmental → Aquatic → Freshwater → Lake	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.31%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.59%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.59%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.34%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.72%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.86%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Sewage Treatment Plant	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014055	Sewage treatment plant microbial communities from Vermont, USA - ANOX_W	Engineered	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025964	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_6027180	2032320006	Soil	KKFFVYPDASKNQIYVGGPAEYDAYLKLHPEEQQRVQSARDAAAKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW
MBSR1b_0182.00007520	2162886012	Miscanthus Rhizosphere	PDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
JGIcombinedJ13530_1088365061	3300001213	Wetland	KFYVYPDAPRKQVYVGGPKEYAAYRELHPGPQPTAEDAAVKASAYRGKQAETMRSATARDLSDPFLGVTWADLGW*
JGI24747J21853_10132512	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	VRGLPAGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0055438_102882391	3300003995	Natural And Restored Wetlands	DWVRGLPPGKIRPMQRTGKKLFIYPDAANHQIYVGGPKEYDAYVQLHPEHRAAGAQQAAREASAYRGKQDNAMRNATARDLSDPFLGASWADLGW*
Ga0055491_102187241	3300004050	Natural And Restored Wetlands	RPMQRTGKKYFIYPDSSRNQVYVGGPKEYETYVQLHPEHRVADAQEAQKAASAYRMKQADAMRKATARDLSDPFLGVSWADLGW*
Ga0062589_1011686411	3300004156	Soil	KYFIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0063356_1032446222	3300004463	Arabidopsis Thaliana Rhizosphere	KQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0062592_1021267132	3300004480	Soil	KYFIYPDSARNQIYVGGPMEYESYARLHPEHRIADLQQATKEQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0062383_106152252	3300004778	Wetland Sediment	PPGKIRAMQRTGKKYYIFPDAARNQVFVGGPKEYEAYAQLHPEHRVADATKTVREGSAYRAKQENAMQSATARDLSDPFLGASWADLGW*
Ga0070683_1000158437	3300005329	Corn Rhizosphere	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0070668_1004770784	3300005347	Switchgrass Rhizosphere	PMQRNGKKFYIYPDPSRNQIYVGGPHEYERYRQLHPQTQKSASEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0070669_1015704422	3300005353	Switchgrass Rhizosphere	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTKAAKDASAYRAQQTDEMKQASARDLSDPFLGVTWGDLGW*
Ga0070671_1000791225	3300005355	Switchgrass Rhizosphere	KIRPMQRTGRKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVADSKKAAKDASAYRAKQTDEMKQASARDASDPFLGATWADLGW*
Ga0070667_1001902001	3300005367	Switchgrass Rhizosphere	GKIRPMQRTGKKFFIYPDATRNQVYVGGPKEYEAYVALHPENGVADAQKAAREASAYRAKQSEAMQKATARDLSDPFLGASWADLGW*
Ga0073909_105098901	3300005526	Surface Soil	GGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0068853_1000901201	3300005539	Corn Rhizosphere	MQRTGKKYFIYPDAFRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW*
Ga0068855_1012859151	3300005563	Corn Rhizosphere	GKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0066702_108887851	3300005575	Soil	TTKVQEEWVRKLPAGKIRPMQRTGKKYFIYPDSSRNRVFVGGPTEYETYVQLHPENRVADAGKAQIAASEYRTKQADAMQKATARDLSNPFLGASWADLGW*
Ga0070702_1000904843	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	KYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0068852_1020014631	3300005616	Corn Rhizosphere	KKYFIYPDASRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW*
Ga0074472_107492151	3300005833	Sediment (Intertidal)	ERQLLDAGFKVLVATTKVQEEWVHKLPPGKIRPMQRTGKKYFIYPDPSRNQIYVGGPKEYETYVQLHPENRVADAQEAQIAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW*
Ga0068863_1001602614	3300005841	Switchgrass Rhizosphere	QLLELGFKVLVATTTVQEKWVKGLAPGQIRPMQRNGKKFYIYPDPSRNQIYVGGPHEYERYRQLHPQTQKSASEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0068863_1016141082	3300005841	Switchgrass Rhizosphere	LAPGKFRPVQRNGKKFFIYPDAAKSQIYVGGPAEYAAYRKLHPDGQQSMQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0068858_1000436476	3300005842	Switchgrass Rhizosphere	PVQQEWVKTLPAGAIRKMQRNGKKYFIYPDAAKSQVYVGGPKEYDAYRKLHPEDTQAATKAASKERSARLKQEDAMRSATARDASDPFLGHTWADFGY*
Ga0068858_1006188352	3300005842	Switchgrass Rhizosphere	LGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0068858_1007555252	3300005842	Switchgrass Rhizosphere	FRPVQRNGKKFFIYPDAAKSQNYVGGPAEYAAYRKLHPDGQQSTQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0068858_1021375721	3300005842	Switchgrass Rhizosphere	AGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0075422_105552961	3300006196	Populus Rhizosphere	EDWVRGLPAGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0097621_1004723822	3300006237	Miscanthus Rhizosphere	TPSVDESELLKLGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0068871_1003247082	3300006358	Miscanthus Rhizosphere	SNLGFKVLVATTKVQQDWVRSLPPGKIRSMQRTGKKYFIYPDASKNQIYVGGPAEYAAYQKLHPQTQQSAQDAAAKTSAYRGKQDAAMREATARDLTDPFLGASWADLGW*
Ga0068871_1006776372	3300006358	Miscanthus Rhizosphere	PVDKRALSDAGFTVLTATTKVQEDWVRGLPPGKIRPMQRTGKKYFIYPDAPAKQIYVGGPREYNAYVEHHPEHRVADSKKVAKDASAYRAKQTDEMKQASARDLSDPYLGASWADLGW*
Ga0066659_104481382	3300006797	Soil	MQRTGKKFFVYPDASKNQIYVGGPAQYDAYLKLHPEEQQRVQSARDAVTKESAYRAKQTAAMQAATGRDLSDPFLGASWADLGW*
Ga0075426_101773111	3300006903	Populus Rhizosphere	SLPRGQIRPMQRTGKKFFVYPDAPKNQIYVGGPAEYDAYLKLHPEEQQRVQSARDAAAKESAYRAKQTAAMEAATARDLSDPFLGASWADLGW*
Ga0075435_1006641892	3300007076	Populus Rhizosphere	VQQDWVRSLPPSHIRPMQRTGKKFFIYPDASKNQVYVGGPAEYYAYLKLHPEEQRRVQSARDAATKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW*
Ga0105243_110353611	3300009148	Miscanthus Rhizosphere	VQRSWVKGLPAGKFRAMQRTGQKFFIYPDAPGSQVYVGGPAEYDAYLKLHPENAVADAAAVTREASAYRKQQSEAMQKATARDNSDPWLGLSWSDLGW*
Ga0105241_120636812	3300009174	Corn Rhizosphere	LPPGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0105248_121327971	3300009177	Switchgrass Rhizosphere	LAPGKFRPLQRNGKKFVIYPEAAKTQIYVGGPAEYDAYLKLHPEARQSMQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0105248_123951731	3300009177	Switchgrass Rhizosphere	RAMQRTGKKYFIYPDSPRNQIYVGGPNEYDGYVRLHPEHRIADLQQAAKEQSAYRGKQADAMEKASARDLSDPFLGATWADLGW*
Ga0136852_109518562	3300010412	Mangrove Sediment	MQRTGKKYFVYPDAANDRILVGGPGQYEAYRQLHPEGATSPQDAAARASAHRAKQDAAMRKATARDLSDPFLGVTWTDLGW*
Ga0137364_108163762	3300012198	Vadose Zone Soil	VATTKVQQDWVRSLPPGHIRPMQRTGKKFFIYPDASRNQIYVGGPAEYDAYLKLHPEEQRRVQSARDAATKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW*
Ga0150985_1190369522	3300012212	Avena Fatua Rhizosphere	VRGLPAGKIRPMQRTGKKYFIYPDAPARQIYVGGPKEYNAYVARHPEHRVADSTKVAKDASAYRAKQTEEMKEASARDLSDPYLGASWADLGW*
Ga0137366_107771482	3300012354	Vadose Zone Soil	LVAKTKVQEDWVRGLPPGKIRPMQRTGKKFYIYPDASRNQIYVGGPKEYEAYVQLHLEHRAAGAQQAAEASAYRSKQGDAMRKATARDLSDPFLGASWADLGW*
Ga0150984_1048853431	3300012469	Avena Fatua Rhizosphere	QRTGKKYFIYPDAPARQIFVGGPKEYDAYVQRHPEHRVADSKKAANDASAYRAKQTDAMKEASARDLSDPFLGATWADLGW*
Ga0150984_1094637252	3300012469	Avena Fatua Rhizosphere	VLTATTKLQEDWVRGLPAGRLRPMQRTGKKYFIYPDAPAKQILVGGPKEYDAYVQRHPEHRVADSKKVAKDASAYRAKQTDEMKQASARDLSDPYLGASWADLGW*
Ga0157352_10724732	3300012519	Unplanted Soil	GKKYFIYPDASRNQIYVGGPNEYEAYAQLHPEHRVADLQQSAREQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0164300_101226492	3300012951	Soil	GKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0164304_100835811	3300012986	Soil	FIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0164305_108258441	3300012989	Soil	PAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW*
Ga0157378_113133811	3300013297	Miscanthus Rhizosphere	SELLKLGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0119878_11535551	3300014055	Sewage Treatment Plant	VQEAWVKRLPPGELRPMQRNGKKYFIYPDASRNQVYVGGPQEYDAYVQLHPDSRKDPQDAANKSSAYRKKQDETMRKATARDLSDPFLGVTWADLGW*
Ga0157376_118834612	3300014969	Miscanthus Rhizosphere	TTVQEKWVKGLAPGQIRPMQRNGKKFYIYPDAGRNQIYVGGPQEYERFRQLYPETQKGTSEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0157376_125266862	3300014969	Miscanthus Rhizosphere	SMQRTGKKYFIYPDASKNQIYVGGPAEYAAYQKLHPQTQQSAQDAAAKTSAYRGKQDAAMREATARDLTDPFLGASWADLGW*
Ga0173483_103111531	3300015077	Soil	PGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0173480_100174321	3300015200	Soil	DAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0180085_11470951	3300015259	Soil	ATTKVQQDWVRGLPPGKIRPMQRTGKKFYIYPDASRNQIYVGGPKEYEAYVQLHPENRAAGAQEAAKEASAYRLKQDDVMRKATAHDLSDPFLGASWADLGW*
Ga0132258_106657894	3300015371	Arabidopsis Rhizosphere	IYPDAPRNQIYVGGPAEYEAYRKLHPEQQSSQDVANKESAYRGKQAAAMSAATAHDLSDPFLGASWADLGW*
Ga0132257_1003467191	3300015373	Arabidopsis Rhizosphere	TGKKYFIYPDAAKNQIYVGGPKEYEAYAQLHPEHRVANAEQAAKEASAYRGKQDKVTREATARDLSDPFLGASWADLGW*
Ga0132257_1043003911	3300015373	Arabidopsis Rhizosphere	QLLDSGFKVLVATTKVQQEWVHGLPPGKIRAMQRTGKKYFIYPDASRKQIYVGGPKEYEAFAQRHPEHRVADLQQSAREQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0132255_1005446813	3300015374	Arabidopsis Rhizosphere	EWVRGLPPGKIRAMQRTGKKYFIYPDAPRNQIYVGGPKEYEAYVQLHPEHRVADLQRAAKEQSVYRGKQADAMEKASARDLSNPFLGVTWADLGW*
Ga0132255_1037354861	3300015374	Arabidopsis Rhizosphere	ELTNLGFKTLVATTKVQKDWVRSPQPGKMRAVQRTGKKFFIYPDASRSQIYVGGPAEYEAYRKLHPEQQSSQDIANKESAYRGKQAAAMSAATAHDLSDPFLGASWADLGW*
Ga0163161_103241162	3300017792	Switchgrass Rhizosphere	MQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0187765_102111552	3300018060	Tropical Peatland	IDEKQPLDAGFKTLVATTKVQEEWVRKLPPGKIRPMQRTGKKYFIYPDAPRNQIFVGGPEEYETYVQRHPEHRIANAQEAERAASAYRMKQADAMEKASARDLSNPFLGATWADLGWY
Ga0184625_103302721	3300018081	Groundwater Sediment	KIRPMQRTGKKFFIYPDASRNQVYVGGPKEYEAYVQLHPENRVADAQVAEKAASAYRMKQADAMQKASARDLSNPLLGVSWADLGW
Ga0184629_103785641	3300018084	Groundwater Sediment	DWVRSLPPGQIRPMQRTGKKFFVYPDAPRNQIYVGGPKEYEAYQQLHPEGQRSAQDVETKASAYRAKQDAAMRSATARDLSDPFLGASWADLGW
Ga0066667_117392011	3300018433	Grasslands Soil	GFKVLVATTKVQEEWVRKLPPGKIRPMQRTGKKYFIYPDSSRNRVFVGGPMEYETYVQLHPENRVADAGKAQIAASEYRTKQADAMQKATARDLSNPFLGASWADLGW
Ga0190274_100496542	3300018476	Soil	LRQLPSDATNWCRCGVAGTTAKKFFVYPDASKGQVYVGGPAEYDAYVKAHPEEKQRVQSAQDAAAKTSAERIKQGTAMQAATTRDLSNPFLGASWADFGY
Ga0207680_113159552	3300025903	Switchgrass Rhizosphere	GLPPGKIRPMQRTGKKFFIYPDATRNQVYVGGPKEYEAYVALHPENGVADAQKAAREASAYRAKQSEAMQKATARDLSDPFLGASWADLGW
Ga0207699_110213601	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207645_105552771	3300025907	Miscanthus Rhizosphere	PGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW
Ga0207643_1000041525	3300025908	Miscanthus Rhizosphere	AGKIRAMQRTGKKYFIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0207707_104746571	3300025912	Corn Rhizosphere	IRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207694_117594132	3300025924	Corn Rhizosphere	DAGFKVLTATTKVQEDWVRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207701_103743882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DWVQRLPPGKIRAMQRTGKKYFIYPDSARNQIYVGGPMEYESYARLHPEHRIADLQQAAKEQSAYRGKQADAMEKASARDLSNPFLGATWADLGW
Ga0207644_108113811	3300025931	Switchgrass Rhizosphere	LTAGKIRAMQRTGKKYFIYPDAPRNQIYVGGPSEYEGYARLHPEHRVADLQQAAKEQANYRGKQADAMEKASARDLSNPFLGATWADLGW
Ga0207651_115005841	3300025960	Switchgrass Rhizosphere	NGKKFFVYPDASRSQIYVGGPAEYDAYVKQHPEEQKRVQSAQDAAAKTSEYRVKQGAAMQAATTRDLSNPFLGASWADLGW
Ga0210127_10227502	3300025964	Natural And Restored Wetlands	KVLVAATKPQEEWIRGLPPGEIRPMQRTGKKFYIFPDAARNQIYVGGPKEYEAYMELHPDSGSKSQEAARKARAYRLKQDDTMTKATAHDLSNPFLGVTWADLGWVVPPYPGTPLGAPRPGGLPPY
Ga0207674_114623081	3300026116	Corn Rhizosphere	QEDWVRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207683_115238841	3300026121	Miscanthus Rhizosphere	SDAGFKVLTATTKVQEDWVRGLPAGKIRPMQRTGKKYFIYPDAPAKQIYVGGPREYSTYVEHHPEHRVADSKKAAKDASAYRARQTDEMKQASARDASDPFLGATWADLGW
Ga0207698_117825462	3300026142	Corn Rhizosphere	KKYFIYPDASRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW
Ga0209293_104716231	3300027877	Wetland	FIYPDASRNQIYVGGPKEYEAYVQLHPESKPGTQDAANKARVYRGKQDAAMREATGRDLSDPFLGASWADLGW
Ga0208980_108106361	3300027887	Wetland	PPGQIRPMQRTGKKYFIYPDAPKKQVYVGGPNEYEAYLQRHPERRVDAAEAAKKNSAYRGKQDDAMRKATARDLSDPFLGVTWADLGW
Ga0209254_103063402	3300027897	Freshwater Lake Sediment	MQRTGKKYFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADAGEAEMAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0268264_100129451	3300028381	Switchgrass Rhizosphere	VDSGFKVLVATNDVQRSWVKGLPAGKFRAMQRTGRKFFIYPDAPGSQVYVGGPAEYDAYLKLHPENAVADAAAVTREASAYRKQQSEAMQKATARDNSDPWLGLSWSDLGW
Ga0268264_105427292	3300028381	Switchgrass Rhizosphere	VLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW
Ga0307469_121127221	3300031720	Hardwood Forest Soil	EWVRKLPPGKIRPMQRTGKKFFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADSREAEKAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0315290_113933232	3300031834	Sediment	RSLPAGQIRAMQRTGKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0310907_105768902	3300031847	Soil	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0315297_108958831	3300031873	Sediment	EEWVRKLPPGKIRPMQRTGKKYFIYPDPSRNQVYVGGPKEYEAYVQLHPENRVADAREAEIAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0311367_120650162	3300031918	Fen	VKSLEPGRIRPMQRNGKKYFIYPDAPRNQIYVGGPNEYAAYQDLHPESQVDPKEAANKANAYRYKQDDAMRKASARDLSNPFLGASWSDLGW
Ga0308175_1025221332	3300031938	Soil	NGKKYFIFPDASKTQIYVGGPAEYEAYRKLHPQAQQSMQDAANKENAYRGKQAAAMQAATAHDLSDPFLGLSWADLGW
Ga0315278_113003691	3300031997	Sediment	GKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0310903_107273282	3300032000	Soil	IYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0310897_104611421	3300032003	Soil	LLDAGFKVLVATTEVQQKWVRGLPPGAIRPMQRTGKKFFIYPDASRNQVFVGGPKEYEAYVQLHPENRVADAQKEARDASAYRAKQSEAMQKATARDLSDPWLGVTWADLIY
Ga0315284_124625702	3300032053	Sediment	LPPGKIRPMQRTGKKYFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADAREAAIAASAYRMKQDDAMQKATARDLSDPFLGVGWADLGW
Ga0315277_109778681	3300032118	Sediment	KKFFIYPDASGNQIYVGGPAEYEAYQQLHPEGQQSAQDAAAKASAYRGKQDAAMRKATARDLSDPFLGASWADLGW
Ga0315281_107773251	3300032163	Sediment	MQRTGKKFFIYPDASGNQIYVGGPAEYEAYQQLHPEGQQSAQDAAAKASAYRGKQDAAMRKATARDLSDPFLGASWADLGW
Ga0315281_118018242	3300032163	Sediment	VQQDWVRSLPPGQIRAMQRTGKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEAQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0315268_123002361	3300032173	Sediment	GQIRAMQRTGKKFFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRNATARDLSDPFLGVTWSDLGW
Ga0307472_1021752042	3300032205	Hardwood Forest Soil	IYVGGPAEYDAYQQLHPEEQQSAQSAKDAAAKQSAYRGKQAAAMQAATARDLSDPFLGASWADLGW
Ga0315270_107651551	3300032275	Sediment	ATTKVQQEWVKTLPPGQIRPMQRNGKKFFIYPDSPRNQIYVGGPEEYAAYQKLHPENQQSAQEAANKASAYRLKQDDAMKKATARDLSNPFLGASWADLGW
Ga0335077_115942591	3300033158	Soil	AMQRTGKDYFIYPDPSRNQIYVGGPKEYATYVQLHPEHRVADAGEAQKAESAYRMKQTDAMQKATARDLSNPFLGASWADLGW
Ga0310810_107513821	3300033412	Soil	KIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0316619_110613381	3300033414	Soil	IGQPPAHGGDGGPAEYEAYQQLHPEGRPSAQDAATKARAYRGKQDAAMRKSTARDLSDPFLGASWADLGR
Ga0316622_1014322021	3300033416	Soil	AQRNQIYVGGPAEYQAYRQRHPEEQRSAQDAAAKASAYRGKQDVAMRDATARDLSDPFLGVSWSDLGW
Ga0316625_1025409042	3300033418	Soil	WVKTLPPGKIRPMQRNGKHFFIYPDAPRNQIYVGGPKEYEAYRQLHPETPTGTQEAADKATAYRLKQDKAMREATTRDLSDPFLGASWYDLGW
Ga0316601_1020227581	3300033419	Soil	KIRPMQRTGKKFFIYPDAPRNQIYVGGPKEYDAYVKLHPEDRTTTQEAAKKASDYRVKQGDVMRNATEHDLSNPFLGATWADLGW
Ga0316627_1004415032	3300033482	Soil	LPPGKIRPMQRTGKKYFIYPDSTRNQVYVGGPKEYEKYVQLHPENRVADAQEAQKAASAYRMKQAEEMQKATARDLSDPFLGVSWADLGW
Ga0316627_1023653732	3300033482	Soil	IYVGGPAEYDAYRQLHPEGEQSAQDAAAKARAYREKQDAAMRAATARDLSDPFLGVSWADLGW
Ga0316629_115973842	3300033483	Soil	IRPMQRTGKKFFIYPDARNKQIYVGGPNEYEAYLQRHPESRVDAAEAAKKNSAYRGKQDDAMRQATSRDLSDPFLGVTWADLGW
Ga0316630_101733192	3300033487	Soil	ESQLLELGFKVLAATTKAQQDWVRSLPPGQIRPMQRTGKKFYIYPDAPRNQIYVGGPKEYEAYVQLHPESKPGTQDAANKARVYRGKQDAAMREATGRDLSDPFLGASWADLGW
Ga0316628_1007841913	3300033513	Soil	QEEWVRGLPPGKIRPMQRTGKKYCIYPDASKNRIYVGGPKEYDAKLALHPEHRAASAGQVAKEASAYRAKQEDTMRKATARDLSDPFLGASWADLGW
Ga0316616_1005113184	3300033521	Soil	IYPDAPKKQIYVGGPNEYEAYLQRHPESRVDAAEAAKKNSAYRGKQDDAMRKATARDLSDPFLGVTWADLGW
Ga0316616_1039413271	3300033521	Soil	TTKVQEDWVRSLPPGQIRAMQRTGKKFFIYPDASRNQIYVGGPAEYDAYRQLRPEGEQSEQDAAAKARAYRGKQDAAMRAATARDLSDPFLGVSWADLGW
Ga0370493_0229212_2_214	3300034129	Untreated Peat Soil	PDAANKQVYVGGPEQYEALLERHPDARQSPQDAAAKASAYRGQQNQSMQKATARDLTDPFLGASWADLGW
Ga0364931_0130543_1_261	3300034176	Sediment	GKIKPMQRTGKKFFIYPDASRNQIYVGGPKEYEAYHQLHPESQLATREAAKKGSAYRLKQDEVMQKATARDLSDPFLGASWFDLGW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078884

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences