3300012090: Attine ant fungus gardens microbial communities from Florida, USA - TSFL040 MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300012090
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121619 | Gp0175765 | Ga0153956
• Sample Name: Attine ant fungus gardens microbial communities from Florida, USA - TSFL040 MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 487263542
• Sequencing Scaffolds: 34
• Novel Protein Genes: 37
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Olivibacter → unclassified Olivibacter → Olivibacter sp. LS-1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium RH AL1	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens → Attine Ant Fungus Gardens Microbial Communities From Various Locations In Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: USA: Florida, Wekiwa Springs
• Coordinates
  • Lat. (^o): 28.7105
  • Long. (^o): -81.4844
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F002779	Metagenome / Metatranscriptome	530	Y
F003627	Metagenome / Metatranscriptome	476	Y
F004408	Metagenome / Metatranscriptome	439	Y
F005214	Metagenome / Metatranscriptome	408	Y
F006991	Metagenome / Metatranscriptome	360	Y
F007832	Metagenome / Metatranscriptome	344	Y
F007979	Metagenome / Metatranscriptome	341	Y
F010631	Metagenome / Metatranscriptome	301	Y
F014055	Metagenome / Metatranscriptome	266	Y
F015525	Metagenome / Metatranscriptome	254	Y
F016293	Metagenome / Metatranscriptome	248	Y
F017820	Metagenome	238	Y
F018224	Metagenome / Metatranscriptome	236	Y
F018370	Metagenome / Metatranscriptome	235	Y
F021833	Metagenome / Metatranscriptome	217	Y
F025080	Metagenome	203	Y
F025564	Metagenome / Metatranscriptome	201	Y
F026273	Metagenome / Metatranscriptome	198	Y
F032367	Metagenome / Metatranscriptome	180	Y
F039261	Metagenome	164	Y
F039775	Metagenome / Metatranscriptome	163	Y
F041918	Metagenome / Metatranscriptome	159	Y
F044388	Metagenome	154	Y
F050351	Metagenome / Metatranscriptome	145	Y
F054263	Metagenome / Metatranscriptome	140	Y
F055019	Metagenome / Metatranscriptome	139	Y
F058322	Metagenome / Metatranscriptome	135	Y
F060153	Metagenome / Metatranscriptome	133	Y
F061999	Metagenome / Metatranscriptome	131	Y
F062013	Metagenome / Metatranscriptome	131	Y
F065993	Metagenome / Metatranscriptome	127	Y
F085909	Metagenome	111	Y
F089450	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0153956_1001411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21076
Ga0153956_1001548	All Organisms → cellular organisms → Bacteria	19782
Ga0153956_1001713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	18287
Ga0153956_1002426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	13691
Ga0153956_1004957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	7457
Ga0153956_1006304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	6202
Ga0153956_1007095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5697
Ga0153956_1010775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4230
Ga0153956_1010932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4188
Ga0153956_1011379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4067
Ga0153956_1013859	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	3568
Ga0153956_1022388	All Organisms → cellular organisms → Bacteria	2593
Ga0153956_1023641	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	2504
Ga0153956_1034949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1933
Ga0153956_1036243	Not Available	1884
Ga0153956_1039617	All Organisms → cellular organisms → Bacteria	1771
Ga0153956_1040099	All Organisms → cellular organisms → Bacteria → Proteobacteria	1757
Ga0153956_1041068	All Organisms → cellular organisms → Bacteria	1729
Ga0153956_1042077	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Olivibacter → unclassified Olivibacter → Olivibacter sp. LS-1	1702
Ga0153956_1048016	Not Available	1554
Ga0153956_1066261	Not Available	1244
Ga0153956_1070605	Not Available	1189
Ga0153956_1073909	Not Available	1150
Ga0153956_1073954	Not Available	1150
Ga0153956_1074116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1148
Ga0153956_1076801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1119
Ga0153956_1079213	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1095
Ga0153956_1082196	All Organisms → cellular organisms → Bacteria	1067
Ga0153956_1112757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium RH AL1	852
Ga0153956_1124567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	794
Ga0153956_1144035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718
Ga0153956_1193358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	589
Ga0153956_1194933	Not Available	585
Ga0153956_1197895	Not Available	580

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0153956_1001411	Ga0153956_10014113	F085909	MAIHELHLDALAQTGEQRRPVSGKDRLHEELVCFSR*
Ga0153956_1001548	Ga0153956_100154816	F032367	VAPKRDLKQFRQACKELGLSDEERYAARDALHAEKESGRPRSHRSYGDLLAWLRQWMAGR
Ga0153956_1001713	Ga0153956_100171311	F003627	VDRETARRNMTAGLVAGGFAATVFGLCFIVALLYIAHG*
Ga0153956_1002426	Ga0153956_100242616	F002483	VRLRKTKRRPAESAPPAKRRSPTKRPPSYYAVAGVQLDEELDRLRGLPVFAGGPLTKKRPELKVRRASTRPNRVGFAVPTEHRLQVTVYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRTFKATLARAMDEAYGVRGVPTRSTLHGAYAEAIERLRAKPQLELDLA*
Ga0153956_1004957	Ga0153956_10049572	F007832	VLFLADIFPGGGSPLADVFAIVIALVLFALLFWAIDLIDRI*
Ga0153956_1004957	Ga0153956_10049573	F050351	MSVPLAAFGAADVFGLLVALVVCLYLLYALLRGENL*
Ga0153956_1006304	Ga0153956_10063043	F044388	VKIDGHYDAQADIAWLRFEGYDPATVVSEEVEHGLREVDAQTGAVVALEYWHASDGLPADLLAMLPPPAVGAAA*
Ga0153956_1007095	Ga0153956_10070952	F007832	VTSFAHLLSAADIFPGGGSPVADLFSVALAVVMFALLYWLIGLIDRI*
Ga0153956_1010775	Ga0153956_10107756	F005214	VGFSRFFRRGSGRDPDVLVGDPRLDGWETVATYEDDRTAVAWRDQLRALGVDAACAADHPLDRFDRGDIFLVVPPDQWSRANEIVDNID*
Ga0153956_1010932	Ga0153956_10109323	F089450	MDNIDRKLDLMARSLQEHINLAKELKLNFVAQLLTMTAMEIRINLHRISEQEIDTLCAEARAALHEDRPTASVINFPRRGRYS*
Ga0153956_1011379	Ga0153956_10113795	F002483	VRLRRKKRRPAEGAPPGKRPPPRRSPAYFAVAGVQLDEELERLRRLPVFAGGPLTKKRPELKVRRASTRPNRVGFAVPAEHRLQVTAYPGIRPGDVLETLLHELVHLHVGRAREAHAWHGRAFKATLARAMDEAYGVRGVGARSTLHGAYAEAIERLRARPQLELDLA*
Ga0153956_1013859	Ga0153956_10138591	F026273	KNKDIYYIPDFENDFSIEKLLNIKKILGEGNNFNVLIFYNEFRKDPEILDDVMGNLSKFSASQLIRDY*
Ga0153956_1022388	Ga0153956_10223881	F039261	MRVKLFSVAAATPIQSLENDINDFLESQRPHVTYVSVSSSDIERVASVWYEEPHHRTVDQTMAELEELVDEPG
Ga0153956_1023641	Ga0153956_10236413	F004408	QIDKLIEEAKKRKVSENNELHFLKFLNKSQVDNYYNLSPEDQDQVKLYISERSYFTSSDVLKLISEALSSKNEPLEEKLIRLMPGNIKPIWEQLSDSSKKSILSQARLYPDLTTEAKIEHFWLTRALKKNESVTKKLVSHESLIQEDKLSDKDVQSILERFKNL*
Ga0153956_1034949	Ga0153956_10349492	F055019	MSNASFSRPLGTAMVGGALAMATLEVLIQKNVLTIDEAQRALNTAQTALVNAPSVHGALDGAKIISEIKELFFGRERGQQNERWR*
Ga0153956_1036243	Ga0153956_10362432	F016293	MDKVLVGVVSEAEFSRAQERIPELSNYCGYDDWLDSRYGRFMGLSLGGAETSLETLVLDDFLSWCGGRRISPSEDALDAYAHYALRRSRREPLSAA*
Ga0153956_1039617	Ga0153956_10396171	F025564	MSGFDQIGSTVGDFAYAVFHPSVSNLPAGFLVLVVVVLTIAALPEGARERMRLAGFATVGLIVSLSLTWPITSAILR*
Ga0153956_1039617	Ga0153956_10396172	F041918	MRILWAAIALLFCLGPAVAQPQALAADVGLPYGACGDMATLRANLTGTPYPSFQSNAALHRLGVRCIGVAQRVRRRQ*
Ga0153956_1040099	Ga0153956_10400992	F065993	MTAGELRTLAALIGELGSSNFRTAVSANFGNLADDAVVALDIVAMLFPPTAPFAVAAEVLLELAAYWAPSIHLAPDPNPMADAHTTLARGGRRG*
Ga0153956_1041068	Ga0153956_10410682	F058322	MATVVDIKSANETEKPQLSKQDVRRLLVMCAEMVNLCAKLTSKIDPAAAAMLAYVRDDIVHENELQ*
Ga0153956_1042077	Ga0153956_10420772	F018370	MIHILWATLRPDFFKHMHKEWINRAKNPSNIKTHVAVNWDHHASILKDYLKDTDRLLVLNTNKIGVCYPSYMLSSTLEGNSDDIVVFASDDFMAPQGWDDYLINKLSGRIAALFVRDGYQLPDSSNMLHPAITIPIMTFECLKKLNMIIYHPAYFHMHSDCELYLNLKDLGLLIDDRKSDNTTFEHHHYAAGKRKPDQNDQMYNMKWKDDEKTWNTRKVLDVIERIKI*
Ga0153956_1048016	Ga0153956_10480162	F014055	MSREKTLENVIQGRRGFFRTLMIGAGATAVALPLMTTQSLAQKEGEDPGPGGKCDDGLIVSKKTGKCKMPKKAPPAQ*
Ga0153956_1066261	Ga0153956_10662612	F062013	MTAVVLSLAPNVREAALDLKALRRKIKEAGERAWEWMPAEANARERMMCLSREQPVDEEALSRRQTPPPKPGEGFLKLA*
Ga0153956_1070605	Ga0153956_10706052	F039775	LAAIVYIVWSGLKIARDQHRSTMTALASLGNTHTLGYEALTLTVQRLDHRVRQLEERQ*
Ga0153956_1073909	Ga0153956_10739094	F058322	MNGGEAMAAVVNIKSANEREKPQLSKQDVHRLLVMCAEMVNLCAKLTSKIDPAAAAMLAYVRDDIVHENDLQ*
Ga0153956_1073954	Ga0153956_10739541	F061999	HFNRGILRSLEPKKTDPQLLHRNPPRIGEMLGEDDWFDKMSAEGRDHLRFEHMRQLHAFTDEKKREIMAPALEAAE*
Ga0153956_1074116	Ga0153956_10741161	F025080	PAPRTIYTFTDGSSIQALTGAPAPFCRFANLNGGQEVDLFLGAFSAASPIVQGNVDTLYTLLPLKVGKVVNLARTGPGDRGWQATVQIEKYDRLKVPVGELNCFVLLWTEPSGQGKWARRWWYCPSIEYAAKYTAQFEVVGPDGRTRVSSPTSWELAGIRVP*
Ga0153956_1076801	Ga0153956_10768012	F018224	MRGFVACCAIALGLPALAGTQPRWTFCVASSRSGADVWITGVFAAAHDREQLESAFKTLLGRSGAAGADAQCPEPREDKTEVVNAQFAAEEFNRKLGATLHEASDFPARR*
Ga0153956_1079213	Ga0153956_10792131	F002779	YNFKKDLSFEQEEISRIVEGHLNSCDKFSEKQIISSLNERLRSYTFDSDVKVFLESLNLDMKEYQLLYELKHLYNVLNTKNQGEIYRQPINVLLQTINLDSDQDRLSKVLNELAIYDWVPEIKLFVHNLTKSPEQRSNLLSGGKSDPVYTIVEQVEDGYLCLVKDSWFLLTENNIEKTLLETHMTDPEKMRILRVLESAMRFSTIDGDRVNFRISENLTIGLSVSKKGLIYINDDEMNSETTLESLFSSPIIPIVNKNFYPVLLETSKNLNKFVELDIVKKVSNLVNPYLEVYAFNYKNSTYLYRCDERYGNSFFNYESSLELVNEVKNELNFDLTFFYSNKLNKELVTKKKLEDKEREISLKL
Ga0153956_1082196	Ga0153956_10821962	F060153	STAVSMTLVATPVLAQTFSVDNGNDTVATREQGNTAVSRMAGPNYNGWNNGPPVVGPLFGAVTAPVAMATGGWTQANPSCGLYHDFNGRYTALCGL*
Ga0153956_1112757	Ga0153956_11127572	F010631	MRKSLILIATVVGGGMSYAAGVTEVATGPSTDDPSTWRWHVSSILTVQGNRDLPRSETVADAFNQRYERY
Ga0153956_1124567	Ga0153956_11245671	F021833	IAQTATFGDMPMLGSPNLYRGNAPLAMRLKIDDLHAQLAPLERYGVSPMSFAITGGVRALVRSFGALRGAFCSGANGRSGSETL*
Ga0153956_1144035	Ga0153956_11440352	F054263	LIQATGAQIGAMLLNTKDGRTRMEPMDLLADARRSLADTVRQLAAIEAGAPISKPLTREQAINIVTEQIGLFESVLRRYGGRGNSDRR*
Ga0153956_1193358	Ga0153956_11933581	F007979	QRVRWDIYLLILRAVAMFAMASHGLAFVMVPLMALLLSYFEIWPERVLGAVFGDPGRLYEHDPGKD*
Ga0153956_1194933	Ga0153956_11949332	F017820	VSEEQNKFNEALAEWRRKYGIRDDDAVLQMLELLKLFFQNIKIEIPTDPESIQLVTIRVSLQSLAQLTNTLSKDAQELKQEIRNIPKVSEQLAKGRAVAFLCVMVLSLLLGFAIGKYWH*
Ga0153956_1197895	Ga0153956_11978951	F015525	AAIALSSIPAYAVSGDSSSWGTEGPGQTVPTQSMTNFDRAWNHANESKAHARAGAAWVRHTGGFGYHQPSHTR*
Ga0153956_1197895	Ga0153956_11978952	F006991	MSKTLSAVALGVGLAFLSGTAFAQQGNSSSWGTVGAGPVVPTQTLTNFDRAWNNNNQSKYQAYNSAEWLRQH