3300009971: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_174 metaG

Overview

Basic Information

• IMG/M Taxon OID: 3300009971
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114297 | Gp0127598 | Ga0105127
• Sample Name: Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_174 metaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3585516
• Sequencing Scaffolds: 38
• Novel Protein Genes: 43
• Associated Families: 39

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	5
Not Available	31
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated → Switchgrass Associated Microbial Communities From Austin, Texas, Usa, To Study Host-Microbe Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Austin, Texas
• Coordinates
  • Lat. (^o): 30.387
  • Long. (^o): -97.7301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000199	Metagenome / Metatranscriptome	1639	Y
F000255	Metagenome / Metatranscriptome	1449	Y
F000285	Metagenome / Metatranscriptome	1374	Y
F000330	Metagenome / Metatranscriptome	1285	Y
F000392	Metagenome / Metatranscriptome	1188	Y
F000492	Metagenome / Metatranscriptome	1078	Y
F000770	Metagenome / Metatranscriptome	897	Y
F000927	Metagenome / Metatranscriptome	831	Y
F004472	Metagenome / Metatranscriptome	436	Y
F009663	Metagenome / Metatranscriptome	314	Y
F010812	Metagenome / Metatranscriptome	298	Y
F011469	Metagenome / Metatranscriptome	290	Y
F012546	Metagenome / Metatranscriptome	279	Y
F012944	Metagenome / Metatranscriptome	275	Y
F016911	Metagenome / Metatranscriptome	243	Y
F017083	Metagenome / Metatranscriptome	242	Y
F019942	Metagenome / Metatranscriptome	226	Y
F020484	Metagenome / Metatranscriptome	223	Y
F020839	Metagenome / Metatranscriptome	221	Y
F023774	Metagenome / Metatranscriptome	208	Y
F026178	Metagenome / Metatranscriptome	198	Y
F026477	Metagenome / Metatranscriptome	197	Y
F029305	Metagenome / Metatranscriptome	188	Y
F030332	Metagenome / Metatranscriptome	185	Y
F031344	Metagenome / Metatranscriptome	182	N
F032517	Metagenome / Metatranscriptome	179	Y
F036567	Metagenome / Metatranscriptome	169	Y
F038061	Metagenome / Metatranscriptome	166	N
F039924	Metagenome / Metatranscriptome	162	Y
F040454	Metagenome / Metatranscriptome	161	N
F053032	Metagenome / Metatranscriptome	141	Y
F057075	Metagenome / Metatranscriptome	136	Y
F065367	Metagenome / Metatranscriptome	127	N
F068340	Metagenome / Metatranscriptome	124	Y
F076725	Metagenome / Metatranscriptome	117	Y
F086518	Metagenome / Metatranscriptome	110	Y
F093512	Metagenome / Metatranscriptome	106	N
F100267	Metagenome / Metatranscriptome	102	N
F102384	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105127_10041	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2492
Ga0105127_10070	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	2097
Ga0105127_10368	Not Available	1046
Ga0105127_10409	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1006
Ga0105127_10410	Not Available	1005
Ga0105127_10439	Not Available	984
Ga0105127_10526	Not Available	912
Ga0105127_10542	Not Available	898
Ga0105127_10586	Not Available	872
Ga0105127_10658	Not Available	830
Ga0105127_10684	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	819
Ga0105127_10870	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Oryzoideae → Oryzeae → Zizaniinae → Zizania → Zizania palustris	749
Ga0105127_11159	Not Available	676
Ga0105127_11223	Not Available	666
Ga0105127_11249	Not Available	662
Ga0105127_11278	Not Available	656
Ga0105127_11282	Not Available	655
Ga0105127_11427	Not Available	630
Ga0105127_11527	Not Available	616
Ga0105127_11537	Not Available	614
Ga0105127_11542	Not Available	613
Ga0105127_11666	Not Available	596
Ga0105127_11702	Not Available	591
Ga0105127_11779	Not Available	582
Ga0105127_11847	Not Available	576
Ga0105127_11917	Not Available	569
Ga0105127_11933	Not Available	567
Ga0105127_11947	Not Available	566
Ga0105127_11954	Not Available	564
Ga0105127_12027	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	558
Ga0105127_12135	Not Available	548
Ga0105127_12296	Not Available	534
Ga0105127_12378	Not Available	527
Ga0105127_12490	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	518
Ga0105127_12524	Not Available	515
Ga0105127_12605	Not Available	509
Ga0105127_12639	Not Available	506
Ga0105127_12676	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105127_10041	Ga0105127_100411	F057075	VIDGSCWSGSELTGGVTVVEALVLALPGRGSVEVVTGSAEEVSISEEVTAEAAGCVDCGNRDSSTAPPPEGAA*
Ga0105127_10070	Ga0105127_100701	F032517	LSLSSSSFDKIINPYSEFLGLYGGGADDLVERRGGGGIPLVNLMKEVLGSLIPPRSNMSLLGAGLSSSMLRGDSETECLREELGDASDVDERVLLLPAMNFMRPLMVTPCCTHSKTNTPGVSCRRENNISKSGTN*
Ga0105127_10215	Ga0105127_102151	F029305	STPLDPKLMFWCISFRLGAFGTVSLLRKTCCKTRQTGAIIAKV*
Ga0105127_10368	Ga0105127_103681	F102384	MKAPDPTHWTLNTHFGAFRTIWVHLGLFGCHTTLSAKRVKLVQKFVPRSLVGILATNTPDPPHWTLNSCFGVFRIIWVHLGLFGCVTTLSVKQVKLVKIFVP*
Ga0105127_10409	Ga0105127_104092	F030332	MPKGLANKRARGGMTSALASMDFREQFAALSLGNASHEDSVGATAVEIPFYHRVAFSQSDYALSGHIVIREDVIFQVVPDLGDPCIGSSQSRWGWLCEVTRILNRAHSPGRAP
Ga0105127_10410	Ga0105127_104102	F000255	MGWIWCVRCEKSRRHFVARTFALIAPDDPVLYQVSGSYETIPNAPKHHETDQ
Ga0105127_10439	Ga0105127_104392	F065367	MSAEQKDLGDSAMGDGEKACPCCHFYGVPCRQARATEDEATTRRNQRLFSGAKRKRSHQEQLAEDSLFLDSPSVDELQTIPKRKDSECSRDT
Ga0105127_10526	Ga0105127_105261	F020484	MTKTLDAARSEIRNRLQRWDKMDITLLFGINFGRIRTRWKGKFVHFAMEQCFSTGSILEIERKIREDEAAMGQRGIEGGDDDEKQGLGP*
Ga0105127_10542	Ga0105127_105421	F000927	MGSGATNFMGATSKHILSTEIFPDFIHLYNRGDKKNKNSKPFTKIKSTESFTRDMVLKFLPESYHELNILQKNYRAL*
Ga0105127_10586	Ga0105127_105861	F000285	VYSGPFGCLTKLGGKWAELVQKFVPRSRVGIFCNERTRSTPLDSNLRFWCVSYYLGAFGTVWLSYETRCKMGRPSAKVRATKSCRNVSQRTHPIHPLDHKLAFWCVSYYLGAFGTVWLPYVTRCKTGRTSAKVRAMKSRRNFSQRTHPIHPIEPYSEVLVCFVLFGCIRDRLFA
Ga0105127_10658	Ga0105127_106581	F093512	MSKDDWKAVNAKDDDLKLTKAEGNKIRRTTTPPIFSSGMLDILLIE*
Ga0105127_10684	Ga0105127_106841	F019942	MIKILGLEHLTASKKPEVLGGLLDVTEERPRSNLKDVLTT*
Ga0105127_10870	Ga0105127_108701	F017083	MKMYLKVIGCSCYTCLPRTAPAAAQTDLKMDAAPGTDTGSPQMDQRLLTITWPKTVHNINIQANKG*
Ga0105127_11037	Ga0105127_110372	F016911	AVERLHALAAEAARSEEDPSTSQPKAPAKAPKVQPSDPDHVPVKTVQIGADSTRTTRIAGNLEEK*
Ga0105127_11159	Ga0105127_111591	F086518	VDGCYELNKVRAIYKPRKPPVEGEAEPPQKRARPAGPMGLGRPAYPLSGSPRSHLFRVDSSRLLEFLSFTIAPLWALLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFMGLVLWALLEDGCP*
Ga0105127_11223	Ga0105127_112231	F000392	MGTYFLIDLL*AGCSVAPAQPTSL**N*GIFAQTCSTCLEGPYRKDSSSAHPSRAIDRA*EPRIPSPCSLKAITHATGSKIGSSRSRWNRGTEYYPVGMKTHIEYPDIFF*KYNSPYHIEMGTYVLIDLL*AGGSVAPAQPTSHR*N*RMFAQTCST*LQGPYRKDSSGAHP
Ga0105127_11249	Ga0105127_112491	F053032	MSVLGHPEIGNPKDVTQKDSTQRSQICLIGICKDMMSSMDPMRALGMQDEEAETFLVTRKFSSRIFCWNELYKSQEGESKSTKDNPWLLHFG
Ga0105127_11278	Ga0105127_112781	F031344	ISEMDISLSDQRLKLFARGRTDWRVENIGKKVKKSKRGRLIEGTSASAQQEDLEVNLPPPSSAYWRNEFQGASSGQGYPQGWTSQWEGSQEQAWGHAAAAPPPFSNYGYPPSSYQGEMPDPSFGAQYFDLPQPEQEMRIMGAYARRNMEDIDAIRRHTTQLEDGTAGIAYQMGLLGLAPPEQFNGGAFQQYYDQGYNARANQGD*
Ga0105127_11282	Ga0105127_112821	F076725	SNPCGTSTLVAATKICIELLDCRAGPGPLAAGEGSGPLGTYSGERVLVSWGGSEPSVAA*
Ga0105127_11427	Ga0105127_114271	F068340	GWIRCVCWEKLQRDFVVRTFALIAPVQYALHQVSCSYKTIPNAPKHYETHQNMSLGSNGVDQVRLLGKITT*LRGTNFCINCTSSVCFAPSFMQLRNYPKRTQTI*NTPKHVFMVQWGGSGAFVAKNTM*LCVTNFCIN*TSLVCFETSFLQLRNDRKCTQILRNAPKH*
Ga0105127_11527	Ga0105127_115271	F000199	VHPGPFGCFTKLGAKRAELVQKFVPRSRVGIFRKERTRSSRLDPKLMFWCVLYYLGAFGTAWLPYETRYKTGRTSAKFRATKWRRNFSQLMHPIHP
Ga0105127_11537	Ga0105127_115371	F040454	VHKTRINSLDSTLEFNGASPRKRLKLTEEEKGQAGRPRGVGPAGLLSVGLQFFGFFCCELFDASQA
Ga0105127_11542	Ga0105127_115421	F036567	VICEKLNAAASSNFYPLFLSELAPELNTKVVPNFIMEMFTKFQLKQINIAGDNR
Ga0105127_11666	Ga0105127_116661	F009663	SHNGDLPAKESRETTQELSFGPNEVDWASSLRKNKMELRKHKVVHFMHPKTRFHNLYLPATESHVTSQKHSFGPKEVDWACLLRKNKTQLRKLKVVHCMHPKTRSNNGYLPATESRETTQKLSFGPKEVDWACSLRKNKTQLRKHKLLHFMHPKTRSHNLYHPATEPRETTQKLSFEPKEVDWACSLRKNKTQLR*
Ga0105127_11702	Ga0105127_117021	F012546	MGSSLALSCNIRLFVIELDYGYRYLLEVYSELSSICFLSWLRYYSMLALHDRPVLEMVIISFLELYQLL*
Ga0105127_11779	Ga0105127_117791	F011469	MFWGISYYSGAFMAAWLLTKLGAKRAELVPKFVPGCRIGIFRNVHTRSIPLDPKLTFWCMSNYLGASG
Ga0105127_11847	Ga0105127_118471	F020484	MARTLDVARSEIRRDRLQRWDKMDITLLFGINFGRIRTRWKGKFVHFTVEQCFSTCSVLEIERKIREDEAAMGQRGIEGSDDDVKQ*
Ga0105127_11917	Ga0105127_119172	F000492	MKHGAKCGELVQLMQKFVQGNQVGIFLNERTKSTQLDPKIKFWCVA*
Ga0105127_11933	Ga0105127_119331	F000770	MAQTCALIEPVQPVLQRVSCSNETLANAPKHYEMHTNIS
Ga0105127_11933	Ga0105127_119332	F000770	MARTSALIAPVQHFLHRVSCSNETLPNAPKYYEMHQNMSLGSNVVDQVR
Ga0105127_11947	Ga0105127_119471	F004472	MFCTIWVHLGPFGCLIKHGAKRAEIVQKFVPQSRVGIFHNERTRSTPLDPKLTFWCVSYNLCAFECAFE
Ga0105127_11947	Ga0105127_119472	F039924	PLDPKLTFLCVLYHLCAFGTVGCLTKLVAKRAELVQKFVKQSNVEHFATNAPDPPHWDNILMFCCVRTIRVHLGPLGCLMKLGAKRAELVQKFVPRSRFGIFCNERTRSTPLDPKLMFWYVLYYLGAFGTIWLPY*
Ga0105127_11954	Ga0105127_119541	F038061	WCVSYYLGAFGTVFCITTLSAKRVNWCNCSCHKVTLEFFATDAPDPPHWTLNFCFRTICTILVHLGLFGCLIKLGAERAEVVQKFLPRSRIGIFRDESTRSDPLDPKLTFWCVSYYLGAFGTLWLPYSTQCKRGQTGAKVLATKSRWNFSNEHPRSTPLDPKLMFWCVLYYLGAFGTVWLRNNTYCK
Ga0105127_12027	Ga0105127_120271	F032517	MNLSLSSSSFDKIINPYSEFLGLYGGGADDLVERRGGGGIPSVNLMEELLGSLIPPRSNMSLLGAGLSSSMHRGDPKTECLREELADASDVDERVLLLPVTNLMMPLMVTPCCTQSKINTPRVS
Ga0105127_12135	Ga0105127_121351	F020839	PRTALAAAQTDPKTAALGTGTGAPQMDQRLLTNTWPKQCTIISIQANTNKN*
Ga0105127_12296	Ga0105127_122961	F026178	DVLLEFFATNGPDPHHWNLNSCFGAFLSIWVHLEPFRYCTKHGAKCAKLVQLMQKFMP*
Ga0105127_12378	Ga0105127_123781	F100267	MLLNVKFSFSLRILGLDHYRFPYSCQAFAYIASRNSSFDPIHLFSRALLNSH*FLHYNENHFFHTWLIIKYHLQFL*QFFQYMRLCISIQPCLILNTLTCHFEYHILQQASFIYGSEFFTNNTYPNSHNTHCLLSFSC*
Ga0105127_12490	Ga0105127_124901	F012944	KPKSTRIGTLIAQPVFGLRNSSSVYKQMIRSSYENILDRLLHVENQSATASWEAPVFYVYPDPVESPQDSLDFITNALAKMQLKSCRGHTLAELLDNLREVASIDDLPFQHGTPHETERETGSGGTVLADYESDLESFSRERLVPIIIQHGEAPSYHDPNEAVDQISADNLT
Ga0105127_12524	Ga0105127_125241	F026477	LIILMFVAWLLVDLLCFVAYHLRISRCLYAVTFQSYASSCHIELVAQGQHPASFIFSRSDLLWFALILRVGVISARLGLANGLDDPVV*
Ga0105127_12605	Ga0105127_126051	F010812	MYLGQFCRVTKLGAKRAELVQKFVPRSRVGIFRNEGTRSTPLDPKQM
Ga0105127_12639	Ga0105127_126391	F026178	HDVLFEFFATNAPDQHHSTLNSGFGAFLSVWVYLEPFCYCTKLAAKRAKLVQLMQKFRP*
Ga0105127_12639	Ga0105127_126392	F023774	VQFGAFCTKFRVVSKLFQNAPERKETHENMSLGSNGVDRERSLRKNQARNRGMKFCISCTSLARFAPSFVQ*
Ga0105127_12676	Ga0105127_126761	F000330	MDRVRSLRKIPTRLRGTNFCTSSARFAPSFVRQPNGLECTQTVRNVPKRQFRVQWGELGAFV