Sample 3300009513

Overview

Basic Information
IMG/M Taxon OID	3300009513 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0120400 \| Gp0147181 \| Ga0129285
Sample Name	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1Y
Sequencing Status	Permanent Draft
Sequencing Center	University of Delaware
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1027258273
Sequencing Scaffolds	24
Novel Protein Genes	24
Associated Families	22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Archaea	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Role In Biogeochemical Cycling In A Beach Aquifer System
Type	Environmental
Taxonomy	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater → Microbial Role In Biogeochemical Cycling In A Beach Aquifer System

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Cape Shores, Lewes, Delaware, USA
Coordinates	Lat. (^o)	38.7855	Long. (^o)	-75.1045	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003507	Metagenome / Metatranscriptome	482	Y
F003590	Metagenome / Metatranscriptome	478	Y
F011939	Metagenome / Metatranscriptome	285	Y
F018371	Metagenome / Metatranscriptome	235	Y
F024951	Metagenome	203	Y
F036294	Metagenome / Metatranscriptome	170	Y
F038915	Metagenome	165	Y
F040633	Metagenome / Metatranscriptome	161	Y
F052275	Metagenome / Metatranscriptome	143	Y
F059103	Metagenome / Metatranscriptome	134	Y
F065253	Metagenome / Metatranscriptome	128	Y
F068265	Metagenome	125	Y
F072776	Metagenome	121	N
F074333	Metagenome	119	Y
F078730	Metagenome / Metatranscriptome	116	Y
F085725	Metagenome	111	Y
F087322	Metagenome	110	Y
F093218	Metagenome / Metatranscriptome	106	Y
F094578	Metagenome / Metatranscriptome	106	Y
F096533	Metagenome	104	Y
F099975	Metagenome / Metatranscriptome	103	Y
F102416	Metagenome	101	N

Family

Category

Number of Sequences

3D Structure?

F003507

Metagenome / Metatranscriptome

482

F003590

Metagenome / Metatranscriptome

478

F011939

Metagenome / Metatranscriptome

285

F018371

Metagenome / Metatranscriptome

235

F024951

Metagenome

203

F036294

Metagenome / Metatranscriptome

170

F038915

Metagenome

165

F040633

Metagenome / Metatranscriptome

161

F052275

Metagenome / Metatranscriptome

143

F059103

Metagenome / Metatranscriptome

134

F065253

Metagenome / Metatranscriptome

128

F068265

Metagenome

125

F072776

Metagenome

121

F074333

Metagenome

119

F078730

Metagenome / Metatranscriptome

116

F085725

Metagenome

111

F087322

Metagenome

110

F093218

Metagenome / Metatranscriptome

106

F094578

Metagenome / Metatranscriptome

106

F096533

Metagenome

104

F099975

Metagenome / Metatranscriptome

103

F102416

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0129285_10004249	All Organisms → cellular organisms → Bacteria → Proteobacteria	6624	Open in IMG/M
Ga0129285_10038749	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1866	Open in IMG/M
Ga0129285_10071037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1372	Open in IMG/M
Ga0129285_10084547	Not Available	1262	Open in IMG/M
Ga0129285_10094687	Not Available	1196	Open in IMG/M
Ga0129285_10111523	Not Available	1107	Open in IMG/M
Ga0129285_10122795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1059	Open in IMG/M
Ga0129285_10178354	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	893	Open in IMG/M
Ga0129285_10213540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	824	Open in IMG/M
Ga0129285_10244092	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
Ga0129285_10253658	All Organisms → cellular organisms → Archaea	764	Open in IMG/M
Ga0129285_10261875	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
Ga0129285_10299904	All Organisms → cellular organisms → Archaea	709	Open in IMG/M
Ga0129285_10306757	All Organisms → cellular organisms → Archaea	702	Open in IMG/M
Ga0129285_10311314	Not Available	697	Open in IMG/M
Ga0129285_10328522	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	680	Open in IMG/M
Ga0129285_10384620	All Organisms → cellular organisms → Archaea	633	Open in IMG/M
Ga0129285_10401282	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	621	Open in IMG/M
Ga0129285_10545143	Not Available	539	Open in IMG/M
Ga0129285_10549047	Not Available	537	Open in IMG/M
Ga0129285_10568422	Not Available	528	Open in IMG/M
Ga0129285_10588710	All Organisms → cellular organisms → Archaea	519	Open in IMG/M
Ga0129285_10612943	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG10	509	Open in IMG/M
Ga0129285_10637123	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0129285_10004249

All Organisms → cellular organisms → Bacteria → Proteobacteria

6624

Open in IMG/M

Ga0129285_10038749

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1866

Open in IMG/M

Ga0129285_10071037

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium

1372

Open in IMG/M

Ga0129285_10084547

Not Available

1262

Open in IMG/M

Ga0129285_10094687

Not Available

1196

Open in IMG/M

Ga0129285_10111523

Not Available

1107

Open in IMG/M

Ga0129285_10122795

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

1059

Open in IMG/M

Ga0129285_10178354

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon

893

Open in IMG/M

Ga0129285_10213540

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

824

Open in IMG/M

Ga0129285_10244092

All Organisms → cellular organisms → Bacteria → Proteobacteria

777

Open in IMG/M

Ga0129285_10253658

All Organisms → cellular organisms → Archaea

764

Open in IMG/M

Ga0129285_10261875

All Organisms → cellular organisms → Bacteria

753

Open in IMG/M

Ga0129285_10299904

All Organisms → cellular organisms → Archaea

709

Open in IMG/M

Ga0129285_10306757

All Organisms → cellular organisms → Archaea

702

Open in IMG/M

Ga0129285_10311314

Not Available

697

Open in IMG/M

Ga0129285_10328522

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes

680

Open in IMG/M

Ga0129285_10384620

All Organisms → cellular organisms → Archaea

633

Open in IMG/M

Ga0129285_10401282

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium

621

Open in IMG/M

Ga0129285_10545143

Not Available

539

Open in IMG/M

Ga0129285_10549047

Not Available

537

Open in IMG/M

Ga0129285_10568422

Not Available

528

Open in IMG/M

Ga0129285_10588710

All Organisms → cellular organisms → Archaea

519

Open in IMG/M

Ga0129285_10612943

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium SEEP-SAG10

509

Open in IMG/M

Ga0129285_10637123

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0129285_10004249	Ga0129285_100042492	F018371	MEQNIVAPNRLTNMQEMEVYVNGPDGANRLYIYSGMAEVEICGALPHPRWSLELICFDIGRIHESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDEDSKRVRMNIAAGARDTQAFLEQIAFQVHVLAKVKE*
Ga0129285_10038749	Ga0129285_100387492	F011939	MPRLTLKLAEETLRKEVQKLDKRTQVVGVAQSKKKDAYRVTLLKDGRTSSADLKKDLLKQCLAQEGKGGGLKKALGKAVSHLSIKYR*
Ga0129285_10071037	Ga0129285_100710371	F003507	VGGLEEVHADPRQSHFVLPEMLSQFRRRLSEELMPRLLQIQTTAALEAGLISPSHLVVDTFASEQGSQRVTDATTLYKAKKKS*
Ga0129285_10084547	Ga0129285_100845471	F102416	MGELATFGDIIMGENDWGMISKNPPMYESAVDNAVIEVTDTENKVHKITFKKGGVLNLGREDKTMYLAWDDADTA*
Ga0129285_10094687	Ga0129285_100946872	F038915	MPAISLKNVAAGTSNCLDGLKFQNLQGPALISIYASTAVAGGNIDFSVDTEDFLKAAEANIEASADVVDTDRDLILLREPVPAGKMFLSVNAQICNVLVMIDEV*
Ga0129285_10111523	Ga0129285_101115231	F036294	WFSDEAIVGVKPVADEGAVTYLRGKVSERDRDVGAEGWNM*
Ga0129285_10122795	Ga0129285_101227952	F078730	MEQNIIEPNRLTNMQEMEVHVNGPDGANRLYIYSGMAEVDICGGLPHPRWSLEVICFDVGRAYESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDE
Ga0129285_10178354	Ga0129285_101783542	F102416	MGELATNDEITMGENDWGMISKEPRMYETGVDNAVIEVTDTENKVHKITFKKGGVLKLGREGETLYLAWDDSDTV*
Ga0129285_10213540	Ga0129285_102135402	F059103	MTVKDPPDLLLRLGPLDAPTAAWLLDFAGHLQQAIWRAYGDELEAHWAATEPHQPIYRPSTPPLSRKP*
Ga0129285_10244092	Ga0129285_102440921	F040633	GVRRAKAAFLSGCKSHPAKLLQPEAIGAVMEVTKWLKPLV*
Ga0129285_10253658	Ga0129285_102536582	F074333	MKIEIGDNMRIPTDGKFHPESGHFGKCVWISEDRKTVAIQCERSHKGKNMVFVVEINSEK
Ga0129285_10261875	Ga0129285_102618752	F093218	RRAARSTIWWKKFKDSCKYLSASLAIILVKRKLGRRPHDWTLWFTLGRLYEVGYQWPQAIDALKNARKLDPDNEIIAQHLSHMKEAAHLRKRGKC*
Ga0129285_10299904	Ga0129285_102999041	F024951	MRKVTVKLEMNVVMLVDEGVEISEVVNELDYTVNDTTTAADILDTEITGYEVVDSK*
Ga0129285_10306757	Ga0129285_103067572	F087322	SVCLQALRFGLVLTDLFVFRITQAGTGEACLTFFIKRIFLGEDFRAAIKIQAR*
Ga0129285_10311314	Ga0129285_103113141	F085725	MLLSAITIGLYLAFIGVRHKKRSPGLGMTHAGLALTATIILFVEIFNGPTVKLNNAAAFFLLLAIIGGGLVFLLHEKNRPPSMAAVVA
Ga0129285_10328522	Ga0129285_103285223	F065253	MAAPFFHVEQRSAWIRTSTHTVVYDRDPDYPRFAKDPGGTIKRMLRIWLAELGSEGPYLRAYLGTVTFCFAGPSFRELCRLFHLATRAAKAAGQSAKAL
Ga0129285_10384620	Ga0129285_103846201	F072776	MVVQDETIGGALMYIDCDTHYFPVKFLEGISDQYPDSPRVVRNGDEVKSVLPDGTLIKNQAPKGRWDLDTRVQQADFEGFDKHVLIPENRE
Ga0129285_10401282	Ga0129285_104012822	F068265	MAKKKQPSAVPVEEGLFFPEDFLKLHKRHVIYIKKGVIIDLDKL*
Ga0129285_10545143	Ga0129285_105451432	F052275	KSTYTCPTCGYTAKVWAEPDRAPIATVDTGHYKGCKSLVEVPIEFHCGGLIEDPDVVPSFLNRCPDCNSSSVVPWDAKHSCPKCGEHMTQEAN*
Ga0129285_10549047	Ga0129285_105490471	F096533	MSETLEIMLSDLKDEAQKEILEFYGYETAEESNLGIGPGQTHLNY*
Ga0129285_10568422	Ga0129285_105684222	F096533	MSEALNIMLEDLNSQTQQEVLEFYGYETAAEGNFDIMPLFVLETEDRKEQ*
Ga0129285_10588710	Ga0129285_105887102	F094578	MVDDKKEKPKWPLQRLKGMYFAMHCWKCKKFELPMGEYKKKCEENIQKIINNSKIKEIRFREFNSIIKNSVFCRFEKRNFSNNCPIC
Ga0129285_10612943	Ga0129285_106129432	F099975	EIKGLRGGTHWYVAQTIPQSDAEIAEKGHFWMETS*
Ga0129285_10637123	Ga0129285_106371231	F003590	FNGSGKADGEVYISCVQGVAGQLPGPMRWKVKDSEVVEAEGGELAEECRQLFQNVPGSNRLVEIMFGYHPKASIQYGIADPMHWELISKMPWVGLGTDRKNPTFRHVDGSVMNGRLYIDDRIIVHEQGMLDRSFLHHPEVLEVASEYGDPYQLLAPVSHQAHGSGT

Scaffold ID

Protein ID

Family

Sequence

Ga0129285_10004249

Ga0129285_100042492

F018371

MEQNIVAPNRLTNMQEMEVYVNGPDGANRLYIYSGMAEVEICGALPHPRWSLELICFDIGRIHESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDEDSKRVRMNIAAGARDTQAFLEQIAFQVHVLAKVKE*

Ga0129285_10038749

Ga0129285_100387492

F011939

MPRLTLKLAEETLRKEVQKLDKRTQVVGVAQSKKKDAYRVTLLKDGRTSSADLKKDLLKQCLAQEGKGGGLKKALGKAVSHLSIKYR*

Ga0129285_10071037

Ga0129285_100710371

F003507

VGGLEEVHADPRQSHFVLPEMLSQFRRRLSEELMPRLLQIQTTAALEAGLISPSHLVVDTFASEQGSQRVTDATTLYKAKKKS*

Ga0129285_10084547

Ga0129285_100845471

F102416

MGELATFGDIIMGENDWGMISKNPPMYESAVDNAVIEVTDTENKVHKITFKKGGVLNLGREDKTMYLAWDDADTA*

Ga0129285_10094687

Ga0129285_100946872

F038915

MPAISLKNVAAGTSNCLDGLKFQNLQGPALISIYASTAVAGGNIDFSVDTEDFLKAAEANIEASADVVDTDRDLILLREPVPAGKMFLSVNAQICNVLVMIDEV*

Ga0129285_10111523

Ga0129285_101115231

F036294

WFSDEAIVGVKPVADEGAVTYLRGKVSERDRDVGAEGWNM*

Ga0129285_10122795

Ga0129285_101227952

F078730

MEQNIIEPNRLTNMQEMEVHVNGPDGANRLYIYSGMAEVDICGGLPHPRWSLEVICFDVGRAYESADEIVKITALASFGGGRTDGVAGFAGWQIFGAAGEYDE

Ga0129285_10178354

Ga0129285_101783542

F102416

MGELATNDEITMGENDWGMISKEPRMYETGVDNAVIEVTDTENKVHKITFKKGGVLKLGREGETLYLAWDDSDTV*

Ga0129285_10213540

Ga0129285_102135402

F059103

MTVKDPPDLLLRLGPLDAPTAAWLLDFAGHLQQAIWRAYGDELEAHWAATEPHQPIYRPSTPPLSRKP*

Ga0129285_10244092

Ga0129285_102440921

F040633

GVRRAKAAFLSGCKSHPAKLLQPEAIGAVMEVTKWLKPLV*

Ga0129285_10253658

Ga0129285_102536582

F074333

MKIEIGDNMRIPTDGKFHPESGHFGKCVWISEDRKTVAIQCERSHKGKNMVFVVEINSEK

Ga0129285_10261875

Ga0129285_102618752

F093218

RRAARSTIWWKKFKDSCKYLSASLAIILVKRKLGRRPHDWTLWFTLGRLYEVGYQWPQAIDALKNARKLDPDNEIIAQHLSHMKEAAHLRKRGKC*

Ga0129285_10299904

Ga0129285_102999041

F024951

MRKVTVKLEMNVVMLVDEGVEISEVVNELDYTVNDTTTAADILDTEITGYEVVDSK*

Ga0129285_10306757

Ga0129285_103067572

F087322

SVCLQALRFGLVLTDLFVFRITQAGTGEACLTFFIKRIFLGEDFRAAIKIQAR*

Ga0129285_10311314

Ga0129285_103113141

F085725

MLLSAITIGLYLAFIGVRHKKRSPGLGMTHAGLALTATIILFVEIFNGPTVKLNNAAAFFLLLAIIGGGLVFLLHEKNRPPSMAAVVA

Ga0129285_10328522

Ga0129285_103285223

F065253

MAAPFFHVEQRSAWIRTSTHTVVYDRDPDYPRFAKDPGGTIKRMLRIWLAELGSEGPYLRAYLGTVTFCFAGPSFRELCRLFHLATRAAKAAGQSAKAL

Ga0129285_10384620

Ga0129285_103846201

F072776

MVVQDETIGGALMYIDCDTHYFPVKFLEGISDQYPDSPRVVRNGDEVKSVLPDGTLIKNQAPKGRWDLDTRVQQADFEGFDKHVLIPENRE

Ga0129285_10401282

Ga0129285_104012822

F068265

MAKKKQPSAVPVEEGLFFPEDFLKLHKRHVIYIKKGVIIDLDKL*

Ga0129285_10545143

Ga0129285_105451432

F052275

KSTYTCPTCGYTAKVWAEPDRAPIATVDTGHYKGCKSLVEVPIEFHCGGLIEDPDVVPSFLNRCPDCNSSSVVPWDAKHSCPKCGEHMTQEAN*

Ga0129285_10549047

Ga0129285_105490471

F096533

MSETLEIMLSDLKDEAQKEILEFYGYETAEESNLGIGPGQTHLNY*

Ga0129285_10568422

Ga0129285_105684222

F096533

MSEALNIMLEDLNSQTQQEVLEFYGYETAAEGNFDIMPLFVLETEDRKEQ*

Ga0129285_10588710

Ga0129285_105887102

F094578

MVDDKKEKPKWPLQRLKGMYFAMHCWKCKKFELPMGEYKKKCEENIQKIINNSKIKEIRFREFNSIIKNSVFCRFEKRNFSNNCPIC

Ga0129285_10612943

Ga0129285_106129432

F099975

EIKGLRGGTHWYVAQTIPQSDAEIAEKGHFWMETS*

Ga0129285_10637123

Ga0129285_106371231

F003590

FNGSGKADGEVYISCVQGVAGQLPGPMRWKVKDSEVVEAEGGELAEECRQLFQNVPGSNRLVEIMFGYHPKASIQYGIADPMHWELISKMPWVGLGTDRKNPTFRHVDGSVMNGRLYIDDRIIVHEQGMLDRSFLHHPEVLEVASEYGDPYQLLAPVSHQAHGSGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300009513: Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1Y

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences