Basic Information | |
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Family ID | F096533 |
Family Type | Metagenome |
Number of Sequences | 104 |
Average Sequence Length | 50 residues |
Representative Sequence | MSETLTIMLDDLNSEAQKEVLEFYGYETADEGNLDVVPLFVLETEDRKGQ |
Number of Associated Samples | 56 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 85.58 % |
% of genes near scaffold ends (potentially truncated) | 12.50 % |
% of genes from short scaffolds (< 2000 bps) | 71.15 % |
Associated GOLD sequencing projects | 51 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (76.923 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface (17.308 % of family members) |
Environment Ontology (ENVO) | Unclassified (37.500 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Sediment (saline) (24.038 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 17.95% β-sheet: 12.82% Coil/Unstructured: 69.23% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Sediment Freshwater Wetlands Marine Sediment Deep Subsurface Seawater Marine Sediment Salt Marsh Sediment Marine Sediment Sediment, Intertidal Marine Sediment Enviromental Saline Water And Sediment Hypersaline Lake Sediment Sediment (Intertidal) Marine Sediment Mangrove Sediment Beach Aquifer Porewater Soil Soil Soil Soil |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI2173J19968_100670002 | 3300001752 | Marine Sediment | MSETLTIMLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP* |
JGI2171J19970_103052052 | 3300001753 | Marine Sediment | MSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLF |
SMTZ23_100049511 | 3300002053 | Marine Sediment | MSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ* |
Ga0074242_109911592 | 3300005346 | Saline Water And Sediment | MSESLTIMLADLNDEAQREVLTFYGYESAAEGNLDVVPLF |
Ga0074649_10177227 | 3300005613 | Saline Water And Sediment | MSETLTIMLADLSTEAQREVLDFLGYQAPEEGNLDTVPLFVLEKDELERKEP* |
Ga0074649_10656383 | 3300005613 | Saline Water And Sediment | MSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP* |
Ga0079367_10476113 | 3300005782 | Marine Sediment | MSKTLTIMLEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ* |
Ga0074469_108801621 | 3300005832 | Sediment (Intertidal) | MSGTLTIMFDDLNSEAQKEVLEFYGYQTAAEGNLDVVPLLVLETDETAQKER* |
Ga0074469_109107533 | 3300005832 | Sediment (Intertidal) | MSKTLNIMLEDLNGETQKEVLKFYGYETAAEGNFDIMPLFVLQTEDRKEQ* |
Ga0074469_110075194 | 3300005832 | Sediment (Intertidal) | MAETLTIMLDNLNRDAQKEVLKFYSYQTAAEGNLEVVPLFVLETED* |
Ga0115863_101941110 | 3300009034 | Sediment, Intertidal | MSETLEIMFDDLDVKARKEVLEFYGYDSPEEGNLDVVPLFILEKQEQDREGQ* |
Ga0115863_10968482 | 3300009034 | Sediment, Intertidal | VKPGKEDRMSETLTIMFDDLNSEAQREVLEFYGYNSPEDGNLDVVPLFVLEKEEQV* |
Ga0115863_12450901 | 3300009034 | Sediment, Intertidal | MFEDLNSKAQIEVLEFYGYHNPEEGNLDVVPLFILEKEEQK* |
Ga0115863_13040223 | 3300009034 | Sediment, Intertidal | MSETLEIMFDDLDAKARKEVLEFYGYDSAEDGNLDVVPLFILEKEEQERKVQ* |
Ga0115863_13059321 | 3300009034 | Sediment, Intertidal | MSETLEIMFDDLNAKAQKKVLEFYGYDSPEEGNLDVVPLFILEKQEQDREGQ* |
Ga0118735_100380172 | 3300009136 | Marine Sediment | MFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEKEEQE* |
Ga0114921_103602462 | 3300009150 | Deep Subsurface | MSKTLTIMFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEREEEDRKEH* |
Ga0114921_104744272 | 3300009150 | Deep Subsurface | MSKTLTIMFEDLNNKAQKEVLEFYGYDSAEEGNLDVVPLFILEEEEQERKEY* |
Ga0114921_105874522 | 3300009150 | Deep Subsurface | VKARKEQQMSKTLTIMFEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ |
Ga0114925_112782771 | 3300009488 | Deep Subsurface | MFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEKEEQERKGR* |
Ga0114930_100068919 | 3300009499 | Deep Subsurface | MSETLEIMFDDLNVKARKEVLEFYGYDSLEEGNFDVVPLFILEKQEQD* |
Ga0114930_100262505 | 3300009499 | Deep Subsurface | MLDDLNSKAQKEVLEFYGYKSPEDGNLDIVPLFVLEKESEKEG* |
Ga0129285_105490471 | 3300009513 | Beach Aquifer Porewater | MSETLEIMLSDLKDEAQKEILEFYGYETAEESNLGIGPGQTHLNY* |
Ga0129285_105684222 | 3300009513 | Beach Aquifer Porewater | MSEALNIMLEDLNSQTQQEVLEFYGYETAAEGNFDIMPLFVLETEDRKEQ* |
Ga0129284_102371832 | 3300009514 | Beach Aquifer Porewater | MPETLTIMLADLNNQTQAEVLKFYGYESAEEGNLDIVPLFVLEEEEPRQG* |
Ga0129284_105939421 | 3300009514 | Beach Aquifer Porewater | MSETLEIMLSDLNSEAQKEVLQFYDYETVADGNLEVVPLC |
Ga0114920_103761053 | 3300009528 | Deep Subsurface | MFDDLNNEAQKEVLEFYGYETPAKGNLDVVPLFVLEKEEQE* |
Ga0114920_105170121 | 3300009528 | Deep Subsurface | MSETLEIMFDDLGVKARKEVLEFYGYDSPEEGNFDMVPLFILEKQEQD* |
Ga0114919_101025992 | 3300009529 | Deep Subsurface | MSPTLTVVFDDLNSKAQKEVLEFYGYDSPEDGNLDVVPLFILEKEEQNRKEH* |
Ga0114919_102467982 | 3300009529 | Deep Subsurface | MSETLEIMFDYLDVKARKEVLEFYGYDSPEEGNLDVVPLFILEKQEQD* |
Ga0114919_105101691 | 3300009529 | Deep Subsurface | MSKTLAIMFDDLDGKAQEEVLEFYGYESPVEGNFDVAPLFVLEKEEEGDE* |
Ga0114919_105943732 | 3300009529 | Deep Subsurface | VKLEIKKGKSMSKTLTIMFEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ* |
Ga0129287_100549352 | 3300009538 | Beach Aquifer Porewater | MPETLTIMLADLNNQTQAEVLKFYGYESAEEGNLDIVPLFVPEEEEPRQG* |
Ga0136851_110850861 | 3300010413 | Mangrove Sediment | MSETLTVMLADLSEQTQSEVLAFYGYASAAEGNLDVVPLFVLERDEVEQQ* |
Ga0114922_102037362 | 3300011118 | Deep Subsurface | MLEDLNSQTQQEILKFYGYETAAEGNFDIMPLFVLETEDRKEQ* |
Ga0114922_109247291 | 3300011118 | Deep Subsurface | LNIMLEDLNSQTQQEVLKFYGYETAAEGNLDIMPLFVLETEDLKEQ* |
Ga0153915_104757132 | 3300012931 | Freshwater Wetlands | MSETLTIMFDDLNSDAQEEVLEFYGYETAAEGNFDVVPLFVLEAEDRNEQ* |
Ga0153915_105179683 | 3300012931 | Freshwater Wetlands | MPETLTIMLDDLNSEAQREVLEFYGYKTAAEGNLDVVPLFELEKGE* |
Ga0153915_114942812 | 3300012931 | Freshwater Wetlands | MSETLTIMFDDLKSEAQKEVLEFYGYETAAEGNLDVVPLFVLEKDE* |
Ga0153916_124049552 | 3300012964 | Freshwater Wetlands | MSETLTIMLDDLTCEAQKEVLQFYGYATAAEGNFDIMPLFVLETEDRKEQ* |
Ga0180437_1000418011 | 3300017963 | Hypersaline Lake Sediment | MSETLNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ |
Ga0180438_106426372 | 3300017971 | Hypersaline Lake Sediment | MSQELTIMLADLNNRTQKEVLEFYGYKNAEEGNLDIVPLFVLEKEGPEQE |
Ga0180431_102503462 | 3300017987 | Hypersaline Lake Sediment | MSETLTIMLADLSTEAQSEVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP |
Ga0180431_102503472 | 3300017987 | Hypersaline Lake Sediment | MSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP |
Ga0180431_103603482 | 3300017987 | Hypersaline Lake Sediment | MSETLTIMLADLNDETQKEVLTFYGYESASDGNLNVVPFFVLEIEEPRRKEH |
Ga0180432_100143441 | 3300017989 | Hypersaline Lake Sediment | MSETLTIMLADLNDETQKEVLTFYGYESASDGNLNVVPFFVLEIEEPRRKE |
Ga0180433_100481144 | 3300018080 | Hypersaline Lake Sediment | MANTLTIMLDDLNPEAQKVVLEFYGYKSPEEGNLDVVPLFILEKEQD |
Ga0180433_109622851 | 3300018080 | Hypersaline Lake Sediment | MSETLSIMLEDLNSETQKEVLKFYGYETALEGNLD |
Ga0209979_100283416 | 3300024353 | Deep Subsurface | MSETLEIMFDDLNVKARKEVLEFYGYDSLEEGNFDVVPLFILEKQEQD |
Ga0209979_11257852 | 3300024353 | Deep Subsurface | MSETLTIMLDDLNSKAQKEVLEFYGYKSPEDGNLDIVPLFVLEKESEKEG |
Ga0209986_101981762 | 3300024433 | Deep Subsurface | MSPTLTVVFDDLNSKAQKEVLEFYGYDSPEDGNLDVVPLFILEKEEQNRKEH |
Ga0209986_103925432 | 3300024433 | Deep Subsurface | MSKTLAIMFDDLDGKAQEEVLEFYGYESPVEGNFDVAPLFVLEKEEEGDE |
Ga0207752_10541882 | 3300027555 | Enviromental | MSETLNIMLEDLNSETQQDVLNFYGYETAAEGNLDVMPLFVLETDDRKEQ |
Ga0214474_10143584 | 3300027740 | Soil | MSKTLQIMFEDLNGKAQKEVLEFYGYDGPEDGNLDVAPLFVLEKEEETD |
Ga0256868_104071192 | 3300027811 | Soil | MSETLTIMLDDLNSEAQKEVLEFYGYETADEGNLDVVPLFVLETEDRKGQ |
(restricted) Ga0255052_101326102 | 3300027865 | Seawater | MSETLTIMLDDLNREAQREVLRFYGYKTATEGNLDVVPLFMLETEEPERKKQ |
(restricted) Ga0255052_103570141 | 3300027865 | Seawater | MSETLTIMLEDLNSETRREVLKFYGYKTAAEGNLDVVPLFVMEKEEPERKER |
(restricted) Ga0255052_105975542 | 3300027865 | Seawater | MSEMLTIMLDDLNGEAQREVLRFYGYESAKEGNLDVMPLFVLETEESARKDQ |
Ga0209635_100259845 | 3300027888 | Marine Sediment | MSETLTIMLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP |
Ga0209635_102282132 | 3300027888 | Marine Sediment | MSETLTIMFEDLSKEAQKEVLQFYGYQTAAEGNLDVAPLFVLEKEEQDRKEQ |
Ga0209635_103438982 | 3300027888 | Marine Sediment | MSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ |
Ga0209636_105551992 | 3300027893 | Marine Sediment | MSETLEIMFDDLNAKARKKVLEFYGYDSPEDGNLDVVPLFILEKEEQERKGQ |
Ga0209427_100145962 | 3300027901 | Marine Sediment | MLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP |
Ga0209427_100650463 | 3300027901 | Marine Sediment | MSETLTIMFDDLNSEAQSQVLEFYGCNRPEDGSFEVVPLFVLQKEEQDREEQ |
Ga0209427_102003183 | 3300027901 | Marine Sediment | MSKTLTIMFEDLNSKAQKEVLEFYGYDNPEEGNLDVVPLFILEEEEENRKEQ |
Ga0209427_110860772 | 3300027901 | Marine Sediment | MSETLNIMLEDLNRKTQKEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ |
Ga0209536_1004594492 | 3300027917 | Marine Sediment | MSKTLEIMFDDLNNEAQREVLRFYGCETPEDGNFDIVPLFVLQVEESEE |
Ga0209536_1004655441 | 3300027917 | Marine Sediment | MSKTLTIMFEDLNSDAQKEVLEFYDYDSPEEGNLDVVPLFVLEKEEQDRKGAVI |
Ga0209536_1006880823 | 3300027917 | Marine Sediment | MSEMLNIMLADLNDETQREVLRFYGYESAAEGNLDVVPLFVMEQEEPEGKER |
Ga0209536_1011694351 | 3300027917 | Marine Sediment | MSETLNIMLEDLNSETQKEILKFYGYETAVEGNLDVVPLFVLETDDRKEQ |
Ga0209536_1013464601 | 3300027917 | Marine Sediment | MSETLTIMLADLKGRAQKEILKFYGYQSAKEGNLDVMPLFVLEKEELEQEQNT |
Ga0209536_1013473451 | 3300027917 | Marine Sediment | LNSDAQKEVLEFYGYDNPEEGNLDIVPLFVLEKEDQERKK |
Ga0272441_100172819 | 3300028920 | Marine Sediment | MSETLTIMLADLSTEAQREVLDFLGYQAPEEGNLDTVPLFVLEKDELERKEP |
Ga0272441_100267532 | 3300028920 | Marine Sediment | MSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP |
Ga0272441_100456484 | 3300028920 | Marine Sediment | MSETLTIMLADLSTEAQKEVLDFYGYQTPEEGNLDIVPLFVLEKGERERKEP |
Ga0272441_101039775 | 3300028920 | Marine Sediment | MSETLTIMLADLGAEAQREVLDFYGYQTPEEGNLDTVPLFVLEKDELERKEP |
Ga0272441_109146582 | 3300028920 | Marine Sediment | SSARPEDLERRKTMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP |
Ga0134606_100337722 | 3300029827 | Marine Sediment | MSETLNIMLEDLNSETQKEVLKFYGYESAAEGNLDVVPLFVLETEDRKEQ |
Ga0299915_101284742 | 3300030613 | Soil | MSETLTIMFDDLTSEAQREVLQFYGYKTAAEGNLDVVPLFVLETDE |
Ga0272442_100438334 | 3300030616 | Marine Sediment | MSETLTIMLADLSTEAQREVLDFYGYRAPEEGNLDVVPLFVLERDERERKEP |
Ga0272442_109256702 | 3300030616 | Marine Sediment | SSARPEDLERRKTMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP |
Ga0307380_102645432 | 3300031539 | Soil | MSETLTIMLDDLTSEAQREVLEFYGYATAADGNLDIMPLFVLETEDRKEQDHEPLQGMDPGQTSR |
Ga0315547_10728453 | 3300031553 | Salt Marsh Sediment | MSKTLTIMFEDLNSDAQKEVLEFYGYDNPEEGNLDIVPLFVLEKEDQERKK |
Ga0315549_12659282 | 3300031654 | Salt Marsh Sediment | MSETLNIMLEDLNSETQKEVLKFYGYESAAEGNLDVVPLFVLETECRKEQ |
Ga0315291_100940804 | 3300031707 | Sediment | MSKTLTIMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ |
Ga0315291_106602862 | 3300031707 | Sediment | MSETLTIMLEDLNNETQKEVLEFYGYATAAEGNLDVVPLFVLERDD |
Ga0315293_105052852 | 3300031746 | Sediment | MSETLTIMLDDLNSDAQKEVLEFYGYETAAEGNLDVVPLFVLETEDRKEE |
Ga0315288_100262435 | 3300031772 | Sediment | MSTLEIMFDDLTEDAKERVLEFYGYESPADGNFDIAALFVLEDGQ |
Ga0315285_102086223 | 3300031885 | Sediment | MSKTLAIMFDDLDKEAQKEVLEFYGYDSLEDGNFDIVPLFVLEKQDEPD |
Ga0214473_119640551 | 3300031949 | Soil | MSETLTIMLDDLNSETQKEVLAFYGYGTAAEGNLDVMPLFVLETADRKEQQDEPLQSMDPDQTSR |
Ga0315294_110787122 | 3300031952 | Sediment | VKARREDSMSKTLTIMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ |
Ga0315274_100729382 | 3300031999 | Sediment | MMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ |
Ga0315274_101680671 | 3300031999 | Sediment | SEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ |
Ga0315296_100008619 | 3300032020 | Sediment | MSETLEIMFDDLNARARKEVLEFYGYDGPEDGNLDVVPLFVLEKENKKEH |
Ga0315296_1000202316 | 3300032020 | Sediment | MSETLEIMFDDLNARARKEVLKFYGYDSPEEGNLDVAPLFVMEKEEQDRKEH |
Ga0315296_1000389213 | 3300032020 | Sediment | MSKTLTIMFEDLNSKARKEVLRFYGYKGPSEGNLDVVPLFVLEKEEQERKEH |
Ga0315296_101103164 | 3300032020 | Sediment | KTLTIMFEDLNSKARKEVLRFYGYKGPSEGNLDVVPLFVLEKEEQERKEH |
Ga0315289_106534892 | 3300032046 | Sediment | LDKEAQKEVLEFYGYDSLEDGNFDIVPLFVLEKQDEPD |
Ga0315289_107471741 | 3300032046 | Sediment | TRPGRRCRVSETLEIMFDDLNARARKEVLEFYGYDSPEDGNLDVAPLFVLEKEEQDRKGH |
Ga0315284_115599002 | 3300032053 | Sediment | MSETLTIMLDDLKSEAQKEVLKFYGYATAAEGNLDIVPLFVLETADRKEQ |
Ga0299912_106262221 | 3300033489 | Soil | MPNILEIMFGDLNERAQKEVLELYGYSSPAEGNLDVVPLFVLEQPDDADG |
Ga0316628_1029803932 | 3300033513 | Soil | MSETLTIMFDDLTSEAQREVLEFYGYATAAEGNLDVVPLFVLETEDRKEQPDEPL |
Ga0334965_0000074_11128_11265 | 3300033991 | Sediment | MLEDLNGKTQKEVLQFYGYDSPEEGNLDVVPLFVLEKEEQDRKER |
Ga0334965_0067877_1404_1562 | 3300033991 | Sediment | MSETLEITFDDLNSKAQREVLEFYGYDSPEVGNLDLVPLFVLEKEEENEKEG |
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