NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096533

Metagenome Family F096533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096533
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 50 residues
Representative Sequence MSETLTIMLDDLNSEAQKEVLEFYGYETADEGNLDVVPLFVLETEDRKGQ
Number of Associated Samples 56
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.58 %
% of genes near scaffold ends (potentially truncated) 12.50 %
% of genes from short scaffolds (< 2000 bps) 71.15 %
Associated GOLD sequencing projects 51
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.923 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface
(17.308 % of family members)
Environment Ontology (ENVO) Unclassified
(37.500 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Sediment (saline)
(24.038 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.95%    β-sheet: 12.82%    Coil/Unstructured: 69.23%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00899ThiF 3.85
PF13655RVT_N 1.92
PF11171DUF2958 0.96
PF02065Melibiase 0.96
PF03747ADP_ribosyl_GH 0.96
PF05016ParE_toxin 0.96
PF13385Laminin_G_3 0.96
PF00817IMS 0.96
PF02597ThiS 0.96
PF08485Polysacc_syn_2C 0.96
PF01527HTH_Tnp_1 0.96
PF11799IMS_C 0.96
PF064393keto-disac_hyd 0.96
PF05729NACHT 0.96
PF04542Sigma70_r2 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1086NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsCCell wall/membrane/envelope biogenesis [M] 1.92
COG0389Nucleotidyltransferase/DNA polymerase DinP involved in DNA repairReplication, recombination and repair [L] 0.96
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.96
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.96
COG1397ADP-ribosylglycohydrolasePosttranslational modification, protein turnover, chaperones [O] 0.96
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.96
COG1977Molybdopterin synthase sulfur carrier subunit MoaDCoenzyme transport and metabolism [H] 0.96
COG2104Sulfur carrier protein ThiS (thiamine biosynthesis)Coenzyme transport and metabolism [H] 0.96
COG3345Alpha-galactosidaseCarbohydrate transport and metabolism [G] 0.96
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.92 %
All OrganismsrootAll Organisms23.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001752|JGI2173J19968_10067000Not Available1098Open in IMG/M
3300001753|JGI2171J19970_10305205Not Available503Open in IMG/M
3300002053|SMTZ23_10004951All Organisms → cellular organisms → Bacteria26935Open in IMG/M
3300005346|Ga0074242_10991159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium508Open in IMG/M
3300005613|Ga0074649_1017722All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → Rubinisphaera brasiliensis4280Open in IMG/M
3300005613|Ga0074649_1065638All Organisms → cellular organisms → Bacteria1471Open in IMG/M
3300005782|Ga0079367_1047611Not Available1842Open in IMG/M
3300005832|Ga0074469_10880162Not Available623Open in IMG/M
3300005832|Ga0074469_10910753Not Available1789Open in IMG/M
3300005832|Ga0074469_11007519Not Available2032Open in IMG/M
3300009034|Ga0115863_1019411Not Available9328Open in IMG/M
3300009034|Ga0115863_1096848Not Available3684Open in IMG/M
3300009034|Ga0115863_1245090Not Available2134Open in IMG/M
3300009034|Ga0115863_1304022All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1878Open in IMG/M
3300009034|Ga0115863_1305932Not Available1871Open in IMG/M
3300009136|Ga0118735_10038017Not Available1482Open in IMG/M
3300009150|Ga0114921_10360246Not Available1047Open in IMG/M
3300009150|Ga0114921_10474427Not Available912Open in IMG/M
3300009150|Ga0114921_10587452Not Available818Open in IMG/M
3300009488|Ga0114925_11278277Not Available540Open in IMG/M
3300009499|Ga0114930_10006891Not Available9057Open in IMG/M
3300009499|Ga0114930_10026250Not Available3906Open in IMG/M
3300009513|Ga0129285_10549047Not Available537Open in IMG/M
3300009513|Ga0129285_10568422Not Available528Open in IMG/M
3300009514|Ga0129284_10237183Not Available815Open in IMG/M
3300009514|Ga0129284_10593942Not Available500Open in IMG/M
3300009528|Ga0114920_10376105Not Available963Open in IMG/M
3300009528|Ga0114920_10517012Not Available815Open in IMG/M
3300009529|Ga0114919_10102599Not Available2078Open in IMG/M
3300009529|Ga0114919_10246798Not Available1264Open in IMG/M
3300009529|Ga0114919_10510169All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium829Open in IMG/M
3300009529|Ga0114919_10594373Not Available758Open in IMG/M
3300009538|Ga0129287_10054935Not Available1685Open in IMG/M
3300010413|Ga0136851_11085086Not Available777Open in IMG/M
3300011118|Ga0114922_10203736Not Available1669Open in IMG/M
3300011118|Ga0114922_10924729Not Available710Open in IMG/M
3300012931|Ga0153915_10475713Not Available1425Open in IMG/M
3300012931|Ga0153915_10517968Not Available1364Open in IMG/M
3300012931|Ga0153915_11494281Not Available790Open in IMG/M
3300012964|Ga0153916_12404955Not Available593Open in IMG/M
3300017963|Ga0180437_10004180All Organisms → cellular organisms → Bacteria20758Open in IMG/M
3300017971|Ga0180438_10642637Not Available783Open in IMG/M
3300017987|Ga0180431_10250346Not Available1320Open in IMG/M
3300017987|Ga0180431_10250347Not Available1320Open in IMG/M
3300017987|Ga0180431_10360348Not Available1044Open in IMG/M
3300017989|Ga0180432_10014344All Organisms → cellular organisms → Bacteria8991Open in IMG/M
3300018080|Ga0180433_10048114All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia chilikensis4008Open in IMG/M
3300018080|Ga0180433_10962285Not Available624Open in IMG/M
3300024353|Ga0209979_1002834All Organisms → cellular organisms → Bacteria16048Open in IMG/M
3300024353|Ga0209979_1125785Not Available1000Open in IMG/M
3300024433|Ga0209986_10198176Not Available1004Open in IMG/M
3300024433|Ga0209986_10392543Not Available634Open in IMG/M
3300027555|Ga0207752_1054188All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium872Open in IMG/M
3300027740|Ga0214474_1014358Not Available3152Open in IMG/M
3300027811|Ga0256868_10407119Not Available547Open in IMG/M
(restricted) 3300027865|Ga0255052_10132610All Organisms → cellular organisms → Bacteria → PVC group1216Open in IMG/M
(restricted) 3300027865|Ga0255052_10357014Not Available715Open in IMG/M
(restricted) 3300027865|Ga0255052_10597554Not Available541Open in IMG/M
3300027888|Ga0209635_10025984All Organisms → cellular organisms → Bacteria4728Open in IMG/M
3300027888|Ga0209635_10228213Not Available1504Open in IMG/M
3300027888|Ga0209635_10343898Not Available1174Open in IMG/M
3300027893|Ga0209636_10555199Not Available935Open in IMG/M
3300027901|Ga0209427_10014596All Organisms → cellular organisms → Bacteria8460Open in IMG/M
3300027901|Ga0209427_10065046All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia chilikensis3394Open in IMG/M
3300027901|Ga0209427_10200318All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1671Open in IMG/M
3300027901|Ga0209427_11086077Not Available538Open in IMG/M
3300027917|Ga0209536_100459449Not Available1590Open in IMG/M
3300027917|Ga0209536_100465544Not Available1578Open in IMG/M
3300027917|Ga0209536_100688082Not Available1270Open in IMG/M
3300027917|Ga0209536_101169435Not Available944Open in IMG/M
3300027917|Ga0209536_101346460Not Available872Open in IMG/M
3300027917|Ga0209536_101347345Not Available872Open in IMG/M
3300028920|Ga0272441_10017281All Organisms → cellular organisms → Bacteria9889Open in IMG/M
3300028920|Ga0272441_10026753All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae7270Open in IMG/M
3300028920|Ga0272441_10045648All Organisms → cellular organisms → Bacteria5001Open in IMG/M
3300028920|Ga0272441_10103977All Organisms → cellular organisms → Bacteria → PVC group2809Open in IMG/M
3300028920|Ga0272441_10914658Not Available672Open in IMG/M
3300029827|Ga0134606_10033772Not Available1753Open in IMG/M
3300030613|Ga0299915_10128474Not Available1830Open in IMG/M
3300030616|Ga0272442_10043833Not Available4560Open in IMG/M
3300030616|Ga0272442_10925670Not Available516Open in IMG/M
3300031539|Ga0307380_10264543Not Available1617Open in IMG/M
3300031553|Ga0315547_1072845Not Available1244Open in IMG/M
3300031654|Ga0315549_1265928Not Available624Open in IMG/M
3300031707|Ga0315291_10094080Not Available3249Open in IMG/M
3300031707|Ga0315291_10660286Not Available936Open in IMG/M
3300031746|Ga0315293_10505285Not Available933Open in IMG/M
3300031772|Ga0315288_10026243Not Available7160Open in IMG/M
3300031885|Ga0315285_10208622Not Available1550Open in IMG/M
3300031949|Ga0214473_11964055Not Available572Open in IMG/M
3300031952|Ga0315294_11078712Not Available662Open in IMG/M
3300031999|Ga0315274_10072938All Organisms → cellular organisms → Bacteria → PVC group4537Open in IMG/M
3300031999|Ga0315274_10168067All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae2760Open in IMG/M
3300032020|Ga0315296_10000861Not Available27113Open in IMG/M
3300032020|Ga0315296_10002023Not Available17455Open in IMG/M
3300032020|Ga0315296_10003892All Organisms → cellular organisms → Bacteria12389Open in IMG/M
3300032020|Ga0315296_10110316Not Available1742Open in IMG/M
3300032046|Ga0315289_10653489Not Available965Open in IMG/M
3300032046|Ga0315289_10747174Not Available874Open in IMG/M
3300032053|Ga0315284_11559900Not Available697Open in IMG/M
3300033489|Ga0299912_10626222All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium846Open in IMG/M
3300033513|Ga0316628_102980393Not Available620Open in IMG/M
3300033991|Ga0334965_0000074Not Available85427Open in IMG/M
3300033991|Ga0334965_0067877Not Available1643Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface17.31%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment16.35%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment15.38%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment7.69%
Marine SedimentEnvironmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment6.73%
Sediment, IntertidalEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal4.81%
Beach Aquifer PorewaterEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater4.81%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands3.85%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.88%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment2.88%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)2.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil2.88%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.92%
Salt Marsh SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment1.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.92%
Marine SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment0.96%
EnviromentalEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental0.96%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.96%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment0.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001752Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30EnvironmentalOpen in IMG/M
3300001753Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28EnvironmentalOpen in IMG/M
3300002053Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZEnvironmentalOpen in IMG/M
3300005346Saline sediment microbial community from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300005782Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf, PM3EnvironmentalOpen in IMG/M
3300005832Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBBEnvironmentalOpen in IMG/M
3300009034Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, KoreaEnvironmentalOpen in IMG/M
3300009136Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsfEnvironmentalOpen in IMG/M
3300009150Deep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaGEnvironmentalOpen in IMG/M
3300009488Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaGEnvironmentalOpen in IMG/M
3300009499Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaGEnvironmentalOpen in IMG/M
3300009513Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1YEnvironmentalOpen in IMG/M
3300009514Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1WEnvironmentalOpen in IMG/M
3300009528Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaGEnvironmentalOpen in IMG/M
3300009529Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaGEnvironmentalOpen in IMG/M
3300009538Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2WEnvironmentalOpen in IMG/M
3300010413Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9EnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300017963Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaGEnvironmentalOpen in IMG/M
3300017971Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaGEnvironmentalOpen in IMG/M
3300017987Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaGEnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300018080Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaGEnvironmentalOpen in IMG/M
3300024353Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300024433Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027555Marine sediment microbial community from Union City, CA, USA - Pond 2C Sediment 2 (SPAdes)EnvironmentalOpen in IMG/M
3300027740Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeqEnvironmentalOpen in IMG/M
3300027811Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeqEnvironmentalOpen in IMG/M
3300027865 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21EnvironmentalOpen in IMG/M
3300027888Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)EnvironmentalOpen in IMG/M
3300027893Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)EnvironmentalOpen in IMG/M
3300027901Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300028920Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Prop-6NEnvironmentalOpen in IMG/M
3300029827Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047EnvironmentalOpen in IMG/M
3300030613Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227EnvironmentalOpen in IMG/M
3300030616Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-2OEnvironmentalOpen in IMG/M
3300031539Soil microbial communities from Risofladan, Vaasa, Finland - UN-3EnvironmentalOpen in IMG/M
3300031553Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240EnvironmentalOpen in IMG/M
3300031654Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-200EnvironmentalOpen in IMG/M
3300031707Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20EnvironmentalOpen in IMG/M
3300031746Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20EnvironmentalOpen in IMG/M
3300031772Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20EnvironmentalOpen in IMG/M
3300031885Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300031952Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032020Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032053Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16EnvironmentalOpen in IMG/M
3300033489Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300033991Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bactEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI2173J19968_1006700023300001752Marine SedimentMSETLTIMLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP*
JGI2171J19970_1030520523300001753Marine SedimentMSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLF
SMTZ23_1000495113300002053Marine SedimentMSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ*
Ga0074242_1099115923300005346Saline Water And SedimentMSESLTIMLADLNDEAQREVLTFYGYESAAEGNLDVVPLF
Ga0074649_101772273300005613Saline Water And SedimentMSETLTIMLADLSTEAQREVLDFLGYQAPEEGNLDTVPLFVLEKDELERKEP*
Ga0074649_106563833300005613Saline Water And SedimentMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP*
Ga0079367_104761133300005782Marine SedimentMSKTLTIMLEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ*
Ga0074469_1088016213300005832Sediment (Intertidal)MSGTLTIMFDDLNSEAQKEVLEFYGYQTAAEGNLDVVPLLVLETDETAQKER*
Ga0074469_1091075333300005832Sediment (Intertidal)MSKTLNIMLEDLNGETQKEVLKFYGYETAAEGNFDIMPLFVLQTEDRKEQ*
Ga0074469_1100751943300005832Sediment (Intertidal)MAETLTIMLDNLNRDAQKEVLKFYSYQTAAEGNLEVVPLFVLETED*
Ga0115863_1019411103300009034Sediment, IntertidalMSETLEIMFDDLDVKARKEVLEFYGYDSPEEGNLDVVPLFILEKQEQDREGQ*
Ga0115863_109684823300009034Sediment, IntertidalVKPGKEDRMSETLTIMFDDLNSEAQREVLEFYGYNSPEDGNLDVVPLFVLEKEEQV*
Ga0115863_124509013300009034Sediment, IntertidalMFEDLNSKAQIEVLEFYGYHNPEEGNLDVVPLFILEKEEQK*
Ga0115863_130402233300009034Sediment, IntertidalMSETLEIMFDDLDAKARKEVLEFYGYDSAEDGNLDVVPLFILEKEEQERKVQ*
Ga0115863_130593213300009034Sediment, IntertidalMSETLEIMFDDLNAKAQKKVLEFYGYDSPEEGNLDVVPLFILEKQEQDREGQ*
Ga0118735_1003801723300009136Marine SedimentMFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEKEEQE*
Ga0114921_1036024623300009150Deep SubsurfaceMSKTLTIMFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEREEEDRKEH*
Ga0114921_1047442723300009150Deep SubsurfaceMSKTLTIMFEDLNNKAQKEVLEFYGYDSAEEGNLDVVPLFILEEEEQERKEY*
Ga0114921_1058745223300009150Deep SubsurfaceVKARKEQQMSKTLTIMFEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ
Ga0114925_1127827713300009488Deep SubsurfaceMFDDLNNEAQKEVLEFYGYETPAEGNLDVVPLFVLEKEEQERKGR*
Ga0114930_1000689193300009499Deep SubsurfaceMSETLEIMFDDLNVKARKEVLEFYGYDSLEEGNFDVVPLFILEKQEQD*
Ga0114930_1002625053300009499Deep SubsurfaceMLDDLNSKAQKEVLEFYGYKSPEDGNLDIVPLFVLEKESEKEG*
Ga0129285_1054904713300009513Beach Aquifer PorewaterMSETLEIMLSDLKDEAQKEILEFYGYETAEESNLGIGPGQTHLNY*
Ga0129285_1056842223300009513Beach Aquifer PorewaterMSEALNIMLEDLNSQTQQEVLEFYGYETAAEGNFDIMPLFVLETEDRKEQ*
Ga0129284_1023718323300009514Beach Aquifer PorewaterMPETLTIMLADLNNQTQAEVLKFYGYESAEEGNLDIVPLFVLEEEEPRQG*
Ga0129284_1059394213300009514Beach Aquifer PorewaterMSETLEIMLSDLNSEAQKEVLQFYDYETVADGNLEVVPLC
Ga0114920_1037610533300009528Deep SubsurfaceMFDDLNNEAQKEVLEFYGYETPAKGNLDVVPLFVLEKEEQE*
Ga0114920_1051701213300009528Deep SubsurfaceMSETLEIMFDDLGVKARKEVLEFYGYDSPEEGNFDMVPLFILEKQEQD*
Ga0114919_1010259923300009529Deep SubsurfaceMSPTLTVVFDDLNSKAQKEVLEFYGYDSPEDGNLDVVPLFILEKEEQNRKEH*
Ga0114919_1024679823300009529Deep SubsurfaceMSETLEIMFDYLDVKARKEVLEFYGYDSPEEGNLDVVPLFILEKQEQD*
Ga0114919_1051016913300009529Deep SubsurfaceMSKTLAIMFDDLDGKAQEEVLEFYGYESPVEGNFDVAPLFVLEKEEEGDE*
Ga0114919_1059437323300009529Deep SubsurfaceVKLEIKKGKSMSKTLTIMFEDLNSKARKEVLEFYGYDGSEDGNLDIVPLFILEKEEQERKEQ*
Ga0129287_1005493523300009538Beach Aquifer PorewaterMPETLTIMLADLNNQTQAEVLKFYGYESAEEGNLDIVPLFVPEEEEPRQG*
Ga0136851_1108508613300010413Mangrove SedimentMSETLTVMLADLSEQTQSEVLAFYGYASAAEGNLDVVPLFVLERDEVEQQ*
Ga0114922_1020373623300011118Deep SubsurfaceMLEDLNSQTQQEILKFYGYETAAEGNFDIMPLFVLETEDRKEQ*
Ga0114922_1092472913300011118Deep SubsurfaceLNIMLEDLNSQTQQEVLKFYGYETAAEGNLDIMPLFVLETEDLKEQ*
Ga0153915_1047571323300012931Freshwater WetlandsMSETLTIMFDDLNSDAQEEVLEFYGYETAAEGNFDVVPLFVLEAEDRNEQ*
Ga0153915_1051796833300012931Freshwater WetlandsMPETLTIMLDDLNSEAQREVLEFYGYKTAAEGNLDVVPLFELEKGE*
Ga0153915_1149428123300012931Freshwater WetlandsMSETLTIMFDDLKSEAQKEVLEFYGYETAAEGNLDVVPLFVLEKDE*
Ga0153916_1240495523300012964Freshwater WetlandsMSETLTIMLDDLTCEAQKEVLQFYGYATAAEGNFDIMPLFVLETEDRKEQ*
Ga0180437_10004180113300017963Hypersaline Lake SedimentMSETLNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ
Ga0180438_1064263723300017971Hypersaline Lake SedimentMSQELTIMLADLNNRTQKEVLEFYGYKNAEEGNLDIVPLFVLEKEGPEQE
Ga0180431_1025034623300017987Hypersaline Lake SedimentMSETLTIMLADLSTEAQSEVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP
Ga0180431_1025034723300017987Hypersaline Lake SedimentMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP
Ga0180431_1036034823300017987Hypersaline Lake SedimentMSETLTIMLADLNDETQKEVLTFYGYESASDGNLNVVPFFVLEIEEPRRKEH
Ga0180432_1001434413300017989Hypersaline Lake SedimentMSETLTIMLADLNDETQKEVLTFYGYESASDGNLNVVPFFVLEIEEPRRKE
Ga0180433_1004811443300018080Hypersaline Lake SedimentMANTLTIMLDDLNPEAQKVVLEFYGYKSPEEGNLDVVPLFILEKEQD
Ga0180433_1096228513300018080Hypersaline Lake SedimentMSETLSIMLEDLNSETQKEVLKFYGYETALEGNLD
Ga0209979_1002834163300024353Deep SubsurfaceMSETLEIMFDDLNVKARKEVLEFYGYDSLEEGNFDVVPLFILEKQEQD
Ga0209979_112578523300024353Deep SubsurfaceMSETLTIMLDDLNSKAQKEVLEFYGYKSPEDGNLDIVPLFVLEKESEKEG
Ga0209986_1019817623300024433Deep SubsurfaceMSPTLTVVFDDLNSKAQKEVLEFYGYDSPEDGNLDVVPLFILEKEEQNRKEH
Ga0209986_1039254323300024433Deep SubsurfaceMSKTLAIMFDDLDGKAQEEVLEFYGYESPVEGNFDVAPLFVLEKEEEGDE
Ga0207752_105418823300027555EnviromentalMSETLNIMLEDLNSETQQDVLNFYGYETAAEGNLDVMPLFVLETDDRKEQ
Ga0214474_101435843300027740SoilMSKTLQIMFEDLNGKAQKEVLEFYGYDGPEDGNLDVAPLFVLEKEEETD
Ga0256868_1040711923300027811SoilMSETLTIMLDDLNSEAQKEVLEFYGYETADEGNLDVVPLFVLETEDRKGQ
(restricted) Ga0255052_1013261023300027865SeawaterMSETLTIMLDDLNREAQREVLRFYGYKTATEGNLDVVPLFMLETEEPERKKQ
(restricted) Ga0255052_1035701413300027865SeawaterMSETLTIMLEDLNSETRREVLKFYGYKTAAEGNLDVVPLFVMEKEEPERKER
(restricted) Ga0255052_1059755423300027865SeawaterMSEMLTIMLDDLNGEAQREVLRFYGYESAKEGNLDVMPLFVLETEESARKDQ
Ga0209635_1002598453300027888Marine SedimentMSETLTIMLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP
Ga0209635_1022821323300027888Marine SedimentMSETLTIMFEDLSKEAQKEVLQFYGYQTAAEGNLDVAPLFVLEKEEQDRKEQ
Ga0209635_1034389823300027888Marine SedimentMSEALNIMLEDLNSQTQQEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ
Ga0209636_1055519923300027893Marine SedimentMSETLEIMFDDLNAKARKKVLEFYGYDSPEDGNLDVVPLFILEKEEQERKGQ
Ga0209427_1001459623300027901Marine SedimentMLADLSTEAQREVLDFFGYQAPEEGNLDIVPLFVLEKDERERKEP
Ga0209427_1006504633300027901Marine SedimentMSETLTIMFDDLNSEAQSQVLEFYGCNRPEDGSFEVVPLFVLQKEEQDREEQ
Ga0209427_1020031833300027901Marine SedimentMSKTLTIMFEDLNSKAQKEVLEFYGYDNPEEGNLDVVPLFILEEEEENRKEQ
Ga0209427_1108607723300027901Marine SedimentMSETLNIMLEDLNRKTQKEVLKFYGYETAAEGNLDVVPLFVLETEDRKEQ
Ga0209536_10045944923300027917Marine SedimentMSKTLEIMFDDLNNEAQREVLRFYGCETPEDGNFDIVPLFVLQVEESEE
Ga0209536_10046554413300027917Marine SedimentMSKTLTIMFEDLNSDAQKEVLEFYDYDSPEEGNLDVVPLFVLEKEEQDRKGAVI
Ga0209536_10068808233300027917Marine SedimentMSEMLNIMLADLNDETQREVLRFYGYESAAEGNLDVVPLFVMEQEEPEGKER
Ga0209536_10116943513300027917Marine SedimentMSETLNIMLEDLNSETQKEILKFYGYETAVEGNLDVVPLFVLETDDRKEQ
Ga0209536_10134646013300027917Marine SedimentMSETLTIMLADLKGRAQKEILKFYGYQSAKEGNLDVMPLFVLEKEELEQEQNT
Ga0209536_10134734513300027917Marine SedimentLNSDAQKEVLEFYGYDNPEEGNLDIVPLFVLEKEDQERKK
Ga0272441_1001728193300028920Marine SedimentMSETLTIMLADLSTEAQREVLDFLGYQAPEEGNLDTVPLFVLEKDELERKEP
Ga0272441_1002675323300028920Marine SedimentMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP
Ga0272441_1004564843300028920Marine SedimentMSETLTIMLADLSTEAQKEVLDFYGYQTPEEGNLDIVPLFVLEKGERERKEP
Ga0272441_1010397753300028920Marine SedimentMSETLTIMLADLGAEAQREVLDFYGYQTPEEGNLDTVPLFVLEKDELERKEP
Ga0272441_1091465823300028920Marine SedimentSSARPEDLERRKTMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDVVPLFVLEKDERERKEP
Ga0134606_1003377223300029827Marine SedimentMSETLNIMLEDLNSETQKEVLKFYGYESAAEGNLDVVPLFVLETEDRKEQ
Ga0299915_1012847423300030613SoilMSETLTIMFDDLTSEAQREVLQFYGYKTAAEGNLDVVPLFVLETDE
Ga0272442_1004383343300030616Marine SedimentMSETLTIMLADLSTEAQREVLDFYGYRAPEEGNLDVVPLFVLERDERERKEP
Ga0272442_1092567023300030616Marine SedimentSSARPEDLERRKTMSETLTIMLADLSTEAQREVLDFYGYQTPEEGNLDIVPLFVLEKDERERKEP
Ga0307380_1026454323300031539SoilMSETLTIMLDDLTSEAQREVLEFYGYATAADGNLDIMPLFVLETEDRKEQDHEPLQGMDPGQTSR
Ga0315547_107284533300031553Salt Marsh SedimentMSKTLTIMFEDLNSDAQKEVLEFYGYDNPEEGNLDIVPLFVLEKEDQERKK
Ga0315549_126592823300031654Salt Marsh SedimentMSETLNIMLEDLNSETQKEVLKFYGYESAAEGNLDVVPLFVLETECRKEQ
Ga0315291_1009408043300031707SedimentMSKTLTIMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ
Ga0315291_1066028623300031707SedimentMSETLTIMLEDLNNETQKEVLEFYGYATAAEGNLDVVPLFVLERDD
Ga0315293_1050528523300031746SedimentMSETLTIMLDDLNSDAQKEVLEFYGYETAAEGNLDVVPLFVLETEDRKEE
Ga0315288_1002624353300031772SedimentMSTLEIMFDDLTEDAKERVLEFYGYESPADGNFDIAALFVLEDGQ
Ga0315285_1020862233300031885SedimentMSKTLAIMFDDLDKEAQKEVLEFYGYDSLEDGNFDIVPLFVLEKQDEPD
Ga0214473_1196405513300031949SoilMSETLTIMLDDLNSETQKEVLAFYGYGTAAEGNLDVMPLFVLETADRKEQQDEPLQSMDPDQTSR
Ga0315294_1107871223300031952SedimentVKARREDSMSKTLTIMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ
Ga0315274_1007293823300031999SedimentMMFEDLNSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ
Ga0315274_1016806713300031999SedimentSEAQKEILEFYGYETAVEGNLDVVPLFVLEKEEPERKEQ
Ga0315296_1000086193300032020SedimentMSETLEIMFDDLNARARKEVLEFYGYDGPEDGNLDVVPLFVLEKENKKEH
Ga0315296_10002023163300032020SedimentMSETLEIMFDDLNARARKEVLKFYGYDSPEEGNLDVAPLFVMEKEEQDRKEH
Ga0315296_10003892133300032020SedimentMSKTLTIMFEDLNSKARKEVLRFYGYKGPSEGNLDVVPLFVLEKEEQERKEH
Ga0315296_1011031643300032020SedimentKTLTIMFEDLNSKARKEVLRFYGYKGPSEGNLDVVPLFVLEKEEQERKEH
Ga0315289_1065348923300032046SedimentLDKEAQKEVLEFYGYDSLEDGNFDIVPLFVLEKQDEPD
Ga0315289_1074717413300032046SedimentTRPGRRCRVSETLEIMFDDLNARARKEVLEFYGYDSPEDGNLDVAPLFVLEKEEQDRKGH
Ga0315284_1155990023300032053SedimentMSETLTIMLDDLKSEAQKEVLKFYGYATAAEGNLDIVPLFVLETADRKEQ
Ga0299912_1062622213300033489SoilMPNILEIMFGDLNERAQKEVLELYGYSSPAEGNLDVVPLFVLEQPDDADG
Ga0316628_10298039323300033513SoilMSETLTIMFDDLTSEAQREVLEFYGYATAAEGNLDVVPLFVLETEDRKEQPDEPL
Ga0334965_0000074_11128_112653300033991SedimentMLEDLNGKTQKEVLQFYGYDSPEEGNLDVVPLFVLEKEEQDRKER
Ga0334965_0067877_1404_15623300033991SedimentMSETLEITFDDLNSKAQREVLEFYGYDSPEVGNLDLVPLFVLEKEEENEKEG


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