Sample 3300004210

Basic Information
IMG/M Taxon OID	3300004210 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111384 \| Gp0110935 \| Ga0066639
Sample Name	Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300004210 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111384 | Gp0110935 | Ga0066639

Sample Name

Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	1491146785
Sequencing Scaffolds	33
Novel Protein Genes	38
Associated Families	30

Dataset Contents

Total Genome Size

1491146785

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	1
Not Available	18
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	4
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	5

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense

Ecosystem Assignment (GOLD)
Name	Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Ecosystem Assignment (GOLD)

Name

Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → aquifer → groundwater
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → aquifer → groundwater

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Utah: Grand County
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Utah: Grand County

Coordinates

Lat. (^o)

38.9383

Long. (^o)

-110.1342

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000320	Metagenome / Metatranscriptome	1306	Y
F000449	Metagenome / Metatranscriptome	1126	Y
F003421	Metagenome / Metatranscriptome	487	Y
F004880	Metagenome / Metatranscriptome	420	Y
F007959	Metagenome / Metatranscriptome	341	Y
F014811	Metagenome	260	Y
F016244	Metagenome	248	Y
F017787	Metagenome	238	Y
F030345	Metagenome	185	Y
F037574	Metagenome / Metatranscriptome	167	N
F040819	Metagenome	161	Y
F042051	Metagenome / Metatranscriptome	159	Y
F044906	Metagenome / Metatranscriptome	153	N
F048766	Metagenome	147	Y
F050899	Metagenome	144	Y
F065251	Metagenome / Metatranscriptome	128	Y
F068436	Metagenome / Metatranscriptome	124	Y
F071959	Metagenome / Metatranscriptome	121	Y
F075520	Metagenome	118	Y
F080249	Metagenome / Metatranscriptome	115	Y
F083694	Metagenome	112	Y
F085143	Metagenome	111	Y
F087386	Metagenome / Metatranscriptome	110	Y
F087940	Metagenome / Metatranscriptome	110	Y
F089865	Metagenome	108	Y
F091390	Metagenome	107	Y
F094578	Metagenome / Metatranscriptome	106	Y
F094906	Metagenome	105	N
F097603	Metagenome / Metatranscriptome	104	Y
F099485	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0066639_10001261	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	22534	Open in IMG/M
Ga0066639_10015783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5893	Open in IMG/M
Ga0066639_10030887	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	3992	Open in IMG/M
Ga0066639_10031560	Not Available	3942	Open in IMG/M
Ga0066639_10117459	Not Available	1792	Open in IMG/M
Ga0066639_10121453	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
Ga0066639_10149030	Not Available	1545	Open in IMG/M
Ga0066639_10205900	All Organisms → cellular organisms → Archaea	1258	Open in IMG/M
Ga0066639_10241226	All Organisms → cellular organisms → Archaea	1134	Open in IMG/M
Ga0066639_10264761	Not Available	1065	Open in IMG/M
Ga0066639_10316084	Not Available	944	Open in IMG/M
Ga0066639_10326456	All Organisms → cellular organisms → Archaea	923	Open in IMG/M
Ga0066639_10328346	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	919	Open in IMG/M
Ga0066639_10339217	Not Available	899	Open in IMG/M
Ga0066639_10347205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria	884	Open in IMG/M
Ga0066639_10351263	All Organisms → cellular organisms → Archaea	877	Open in IMG/M
Ga0066639_10365011	Not Available	854	Open in IMG/M
Ga0066639_10398782	Not Available	802	Open in IMG/M
Ga0066639_10444974	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	741	Open in IMG/M
Ga0066639_10488997	Not Available	691	Open in IMG/M
Ga0066639_10513897	Not Available	667	Open in IMG/M
Ga0066639_10520457	Not Available	660	Open in IMG/M
Ga0066639_10548205	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	635	Open in IMG/M
Ga0066639_10560809	Not Available	624	Open in IMG/M
Ga0066639_10569388	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	617	Open in IMG/M
Ga0066639_10581512	Not Available	607	Open in IMG/M
Ga0066639_10591209	Not Available	600	Open in IMG/M
Ga0066639_10592553	Not Available	599	Open in IMG/M
Ga0066639_10604056	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	590	Open in IMG/M
Ga0066639_10616738	Not Available	581	Open in IMG/M
Ga0066639_10622128	Not Available	577	Open in IMG/M
Ga0066639_10696278	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense	529	Open in IMG/M
Ga0066639_10709822	Not Available	520	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0066639_10001261	Ga0066639_1000126121	F042051	MTTTFGEVSWNDDVFSGSEKKNSKDLFLRLDEGSNEMRLITQPFQYLVHKYKKEGDPGFGQKVNCSAVHGSCPLCAAGDKAKPRWLLGVISRKTGTYKILDVSFAVFSQVRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSAADQQIKDSVDFDDLKRRVTPPTPDMVQKRIDKINGVTGEAAEAAPTPSGKAAKAATKAAPAPVNMSEEEDESFPAYDGDQAK*
Ga0066639_10015783	Ga0066639_100157833	F040819	MTKAQEIYEKVEALVATGVPKADAFRQVAEEFGQPFNSMRGAYYAHSRTITGGSSRPRRRQTTTADAVESAAQLLRRALESIDDEVLAAKARAEEAKAEYEALRDSVKERKAAIEAKIDALTS*
Ga0066639_10030887	Ga0066639_100308871	F099485	MNQKIIHNWQHSPSETQVASNPVKAVSKSLQQTKSLVFTNEDLMG
Ga0066639_10031560	Ga0066639_100315602	F091390	MAIKNTESTNTTNTTTIRIEKSIKEELENLDFVRKNTFNEILSTLIEFYNKNKKGAKNEK
Ga0066639_10117459	Ga0066639_101174591	F083694	VNRLEKLKNRQLARFLNHLKKTGQLTPGLESDVKRAYSFAFEDVEALILGLDKEKEDDNFKKA*
Ga0066639_10121453	Ga0066639_101214534	F014811	MWIYDYKTKKEYFASSPRSKFYCYQSIQIEPIPGKPCTILVKKGAEEGRKPAQTFEQLGMFTNQSIPYHASFKK*
Ga0066639_10149030	Ga0066639_101490303	F085143	MARIDDGFATLIEFAEDSDVQMWEKEVTPPGVSGGGENDTSTMRNTTWRTKSPKGLMSLSEASLVVAYDPAVYNEIIIMLNVNQQITITFADSSTLVFWGWIDEFTPGAAAEGSQPTATVKIIPSNQNGSGVETAPQYSVAP*
Ga0066639_10205900	Ga0066639_102059001	F065251	MMYLRFFKKGRKKYYYIAKAVREGDRVIQKSILYIGTADTLYKKLIQLKKKSK*
Ga0066639_10241226	Ga0066639_102412263	F094578	MNNQKERLKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNDIIKSTTFCKFDKRGFSNNCPICKKLGISRRGL*
Ga0066639_10264761	Ga0066639_102647612	F087940	MINKNKRQLEWGISFWIGIGLMSIINVIKITYTQHTISYNWIMFGISIIAIIICV
Ga0066639_10316084	Ga0066639_103160841	F091390	MNTKSTKSTTIRINEPTKEKLETLDFVRKHTFDDILTELMDFYEKNKGKRTK*
Ga0066639_10326456	Ga0066639_103264561	F065251	MYLRHFIKGRKKYYYIAKSIRIKNRIIQKSILYVGTTDGLYEKLIKLKKN*
Ga0066639_10328346	Ga0066639_103283462	F094578	MEQKERLKWPLKRLKGMYFAMHCWKCKIWENSIEGYKKRCEDNIQKIIDNIKVKEMKFKDFNKIIKNSTFCQFEKRDFSDNCPICKKWGISRR*
Ga0066639_10339217	Ga0066639_103392171	F065251	MYLRSFKKGKKKYYYIAKAVRIGKRVIQKSILYLGTADNIYKKLHTK
Ga0066639_10347205	Ga0066639_103472052	F080249	MADNKNKVKEDRNLISFKENYEVYYAVNQLKKQFPDETKSNIKEALFDAAKQVSPSEGREKIMRLTRKELNS*
Ga0066639_10351263	Ga0066639_103512631	F065251	MYLRHFTKGKKKYYYIAKAVRKSTSVIQKSILYIGTADTLYEKLISLKKK*
Ga0066639_10365011	Ga0066639_103650112	F065251	MYLRSFKKGKKRYYYIAQAVRKGKRVIQKSVLYLGNADNIYKKLHTK*
Ga0066639_10398782	Ga0066639_103987821	F071959	MASRNYLVMSNDMTLSDKKEYRLNALSAGLERCGLRGIGDIKADIPGLAGIPDANKVARVKLIHNYLITGQWPRSIDQRELTTGTDLVVAPAVDSWLTAPMAAVGNIVSCFQGVAAPQLVQGKLMVCYAVSVESSAVPMPVSRLIFRRGAAGNVQAQFDMEPMGIRWEVDAFFSEVVVIDPQDVFAIQVRCRNATAVAEIVHIHNFLFESAGLVVA*
Ga0066639_10444974	Ga0066639_104449741	F000449	MKNKKAGEGISPSPDLDQEYELRTSAPKEEMERYYARKKASLLRKIRKINKKIKKNIYNPFINDDE
Ga0066639_10447732	Ga0066639_104477322	F094906	SYPLVDAGDYYYINLQFKTNKSVTKIEVNWTRAGGYNFSKFKNTSGTIHSLPIKYLRPNTTTYFVIKAYTATENVQSAQYAVAVPNASQKVYEVEITFSTVVRLYWSYFVDSPPNNFSAQYNRNGTDWYPWTVYRTGQQYSTNDGSGWQAGEQLEIKIFNPADKSETNIQDSILYGNTDF
Ga0066639_10448576	Ga0066639_104485761	F097603	KVPILTSKFGAYMPIPFDFKESPFIAVPYLKLPNEFEGYGLPMLLENPQIMLNMIKNQRLDAVTLNIHKMWIVNPLANINKAELVTRPFGIIYSTDPNGVREVQFSDVKQSAYREEEMTKSDMRYASGVDDFSMGVGGPASSATEVRHLRESTLERVRLFVNHLGEGYAKLMRYWISMYRQFMSEPLKIRITGENGEVQFPMVEKDDLVGEYDFKATVIPSIAGKNDVDKKQNMDLFQLLSQMPF
Ga0066639_10488997	Ga0066639_104889972	F075520	MKTLHYILNTKTDESFDTIEMKFYPNNWEPEMEEDKDYLQSLIDEDPEKFKNCIIETRTFE*
Ga0066639_10513897	Ga0066639_105138971	F030345	MELKNEKIYIQTIEKRERVNDICWYAITGNQGKRFSCFEAEVAKKLQINRVNLCKVRYFGKYSNIMSVDGYEDNPEVANSNSEIAKQREVESLRILKCVALKSASLCFEGQNANSDEVITKANSFVKWLFSTEDKGAI*
Ga0066639_10520457	Ga0066639_105204572	F094578	MEKEKPKWPLQRLKGMYFAMHCWKCKKFELPMEEYKARCEDNIQRIIDNLNIKEMTFRGFNNIIKNSTFCEFEKRECFRKNN*
Ga0066639_10548205	Ga0066639_105482051	F048766	MKNNKTAKQRNEETEEDKKIIDIVCKLGGGFKEKNNQKNKKTNKI*
Ga0066639_10560809	Ga0066639_105608091	F068436	MEKEKKSAENAQGKGIVNEIYAEIEKKNREYEKRMNLIEAIF
Ga0066639_10560809	Ga0066639_105608092	F017787	KEEYANMEKIIREGEYSETKEKYTLGVRARFEVNFQYFEISKHPKFDDECVYLSRKFFFLKNNISDDEKEKIEKFENNILNKFYYGK*
Ga0066639_10569388	Ga0066639_105693881	F037574	LLSCNKMTGIFADEVSEWTTITISKDTAKKLKEFFGGEETYNYVITFLLDYYDGKTYRF*
Ga0066639_10569388	Ga0066639_105693882	F007959	MERHTDFKKFKQEYKKDFDIPVLSTKEKDIFMYLFLLLRKKMSRGIFPELYNSEIMFSKSDLKTLVLKNIVIFQNYKRGWIVSINSHYITKNTECSFCGAKFNEMVYFRRNSIRCPGCGIRMHGLVTAKRVNDYSVAIANIEKVEAIPKVTTS
Ga0066639_10581512	Ga0066639_105815121	F091390	TIRISKKTKERIEKLDFVRKDTFNEILNRLIDLYEKKKK*
Ga0066639_10591209	Ga0066639_105912091	F050899	SYEVFNTTANAGPQIKTWPFWQGGWSAEYMDPYGMPQGASEEQFIVAFGAMLAEGFYTKRDGKQAGAGLFKSVLWITILRYENPESAKRSFINISETQELQDSTYGGIALKNGTHTLTWWEEESEDWDESTMPCYLIQSGPFVIYLFGRDDVAKDILDRIIVSFGVKDSTSISTLAANIASEKTDSLSLYYGGGNSSNT
Ga0066639_10592553	Ga0066639_105925531	F016244	KMVLPILPGIIVLAGARILVSYGTHLLRFIIANPKILLSTATVVTVADALKEHEKNEQIRNSILQDIYTQNPELAQKIVSAGGFSFHPVENMFQIAISSAITGLIIYAIIQKI*
Ga0066639_10604056	Ga0066639_106040561	F003421	MENKKVGEEDIPSPDLDQEYELRTSAPQEEMERYYARKKAFLLRKIRKINKKIKKNIY
Ga0066639_10616738	Ga0066639_106167382	F004880	SMDYWEEINNGNKYLCDKCGIVALGAFEYDNYIKFQYHYCELCWNYIHLKKGSCSCGNTMTNRNEYPTMKVLCSCGEPVELKIDC*
Ga0066639_10622128	Ga0066639_106221281	F089865	VEIVGFVSIGLLVVIQIGYFAYTFGKLNGKVASIDKRLNDLAHRYDRMEERIGKREGRK*
Ga0066639_10696278	Ga0066639_106962782	F044906	MKMNCDNKKEHMTIEIKRNIANRLKKMSSVGVTYDDIITDLIGYYRATK*
Ga0066639_10709822	Ga0066639_107098221	F000320	KKIKIKTNMMKNTKTPPSKGYKSEVLGREILRKINLIGQKTYKLKKDVNDICGLILSEPGATMFVDGHKAELWTAASDDFSQRWKEIAADKYEVECMVHLMYDLVLQEEIKCKGKIVFSTKRRAMSMVK*
Ga0066639_10722528	Ga0066639_107225282	F087386	MTKEELFEKYHINESHNVWDNGIDNWMSVEVYRIMHDGNLPPEGDQSTSYVCEFLDKVKEHGAFFSELRKRTPDDFGSLFLTSKRMVYTLADEILKELNNE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004210: Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences