Metagenome Family F089865

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089865
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	59 residues
Representative Sequence	MEITGFISIGLLVVIQISYFAYSFGKLNGKVASIDKRLNDLTHRYDKMEERIGKLEGRK
Number of Associated Samples	31
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.78 %
% of genes near scaffold ends (potentially truncated)	22.22 %
% of genes from short scaffolds (< 2000 bps)	98.15 %
Associated GOLD sequencing projects	24
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.185 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater (53.704 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (93.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.07% β-sheet: 0.00% Coil/Unstructured: 37.93%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13412	HTH_24	0.93
PF00239	Resolvase	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
All Organisms	root	All Organisms	14.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
cellular organisms	root	All Organisms → cellular organisms	14.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.19 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004107\|Ga0065179_1063449	Not Available	1183	Open in IMG/M
3300004107\|Ga0065179_1113251	Not Available	837	Open in IMG/M
3300004107\|Ga0065179_1118061	Not Available	816	Open in IMG/M
3300004108\|Ga0065181_1090346	Not Available	875	Open in IMG/M
3300004108\|Ga0065181_1150190	Not Available	640	Open in IMG/M
3300004149\|Ga0066632_10115933	Not Available	888	Open in IMG/M
3300004210\|Ga0066639_10622128	Not Available	577	Open in IMG/M
3300004212\|Ga0066631_10229553	Not Available	842	Open in IMG/M
3300004212\|Ga0066631_10326060	Not Available	674	Open in IMG/M
3300004238\|Ga0066635_10266524	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300004238\|Ga0066635_10304921	Not Available	720	Open in IMG/M
3300004238\|Ga0066635_10317388	Not Available	702	Open in IMG/M
3300004238\|Ga0066635_10374910	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300004238\|Ga0066635_10407694	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300004238\|Ga0066635_10409185	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300004238\|Ga0066635_10489642	Not Available	526	Open in IMG/M
3300004238\|Ga0066635_10514973	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300004239\|Ga0066650_10224609	Not Available	943	Open in IMG/M
3300005235\|Ga0066637_10100928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1401	Open in IMG/M
3300005235\|Ga0066637_10169393	Not Available	955	Open in IMG/M
3300005236\|Ga0066636_10105145	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300005236\|Ga0066636_10142883	Not Available	1141	Open in IMG/M
3300005236\|Ga0066636_10169324	Not Available	1013	Open in IMG/M
3300005236\|Ga0066636_10187742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	942	Open in IMG/M
3300005236\|Ga0066636_10299148	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005236\|Ga0066636_10302814	Not Available	671	Open in IMG/M
3300007965\|Ga0100401_1294414	Not Available	626	Open in IMG/M
3300008002\|Ga0100390_10121298	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300008002\|Ga0100390_10453626	Not Available	585	Open in IMG/M
3300008004\|Ga0100395_1150722	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300008007\|Ga0100386_10294583	Not Available	799	Open in IMG/M
3300008009\|Ga0100394_1183577	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300008010\|Ga0100397_1055770	All Organisms → cellular organisms → Bacteria → Proteobacteria	1758	Open in IMG/M
3300008010\|Ga0100397_1266854	Not Available	563	Open in IMG/M
3300008085\|Ga0100378_1460404	Not Available	551	Open in IMG/M
3300008094\|Ga0100387_10114957	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300008255\|Ga0100403_1037217	Not Available	2229	Open in IMG/M
3300008255\|Ga0100403_1061519	Not Available	1571	Open in IMG/M
3300008255\|Ga0100403_1062775	Not Available	1550	Open in IMG/M
3300008255\|Ga0100403_1070850	Not Available	1427	Open in IMG/M
3300008255\|Ga0100403_1071681	Not Available	1416	Open in IMG/M
3300008255\|Ga0100403_1075438	Not Available	1367	Open in IMG/M
3300008255\|Ga0100403_1075762	Not Available	1363	Open in IMG/M
3300008255\|Ga0100403_1097926	Not Available	1145	Open in IMG/M
3300008255\|Ga0100403_1102413	Not Available	1110	Open in IMG/M
3300008255\|Ga0100403_1118804	Not Available	1005	Open in IMG/M
3300008255\|Ga0100403_1141225	Not Available	894	Open in IMG/M
3300008255\|Ga0100403_1158666	Not Available	825	Open in IMG/M
3300008255\|Ga0100403_1176744	Not Available	767	Open in IMG/M
3300008255\|Ga0100403_1202086	Not Available	700	Open in IMG/M
3300008255\|Ga0100403_1224300	Not Available	652	Open in IMG/M
3300008255\|Ga0100403_1236055	Not Available	631	Open in IMG/M
3300008255\|Ga0100403_1239820	Not Available	624	Open in IMG/M
3300008255\|Ga0100403_1283154	Not Available	560	Open in IMG/M
3300008255\|Ga0100403_1290831	Not Available	550	Open in IMG/M
3300008255\|Ga0100403_1300301	Not Available	539	Open in IMG/M
3300008255\|Ga0100403_1315641	Not Available	522	Open in IMG/M
3300008255\|Ga0100403_1338245	Not Available	500	Open in IMG/M
3300014060\|Ga0119967_10096612	Not Available	1677	Open in IMG/M
3300014060\|Ga0119967_10108888	Not Available	1524	Open in IMG/M
3300014060\|Ga0119967_10182214	Not Available	1006	Open in IMG/M
3300014060\|Ga0119967_10202041	Not Available	927	Open in IMG/M
3300014060\|Ga0119967_10291784	Not Available	697	Open in IMG/M
3300014060\|Ga0119967_10324274	Not Available	644	Open in IMG/M
3300014060\|Ga0119967_10363394	Not Available	591	Open in IMG/M
3300014613\|Ga0180008_1026149	Not Available	2392	Open in IMG/M
3300015370\|Ga0180009_10161071	Not Available	1061	Open in IMG/M
3300015370\|Ga0180009_10350412	Not Available	599	Open in IMG/M
3300015370\|Ga0180009_10401555	Not Available	544	Open in IMG/M
3300020171\|Ga0180732_1245551	Not Available	529	Open in IMG/M
3300024995\|Ga0210018_1058426	Not Available	1022	Open in IMG/M
3300024995\|Ga0210018_1089631	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300025005\|Ga0210005_1051901	Not Available	1250	Open in IMG/M
3300025018\|Ga0210043_1029800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1970	Open in IMG/M
3300025018\|Ga0210043_1048008	Not Available	1418	Open in IMG/M
3300025018\|Ga0210043_1053308	Not Available	1319	Open in IMG/M
3300025018\|Ga0210043_1064110	Not Available	1162	Open in IMG/M
3300025018\|Ga0210043_1116813	Not Available	763	Open in IMG/M
3300025018\|Ga0210043_1119846	Not Available	749	Open in IMG/M
3300025018\|Ga0210043_1120317	Not Available	747	Open in IMG/M
3300025018\|Ga0210043_1129947	Not Available	707	Open in IMG/M
3300025018\|Ga0210043_1141744	Not Available	664	Open in IMG/M
3300025018\|Ga0210043_1200922	Not Available	513	Open in IMG/M
3300025018\|Ga0210043_1202417	Not Available	510	Open in IMG/M
3300025021\|Ga0210017_1131821	Not Available	902	Open in IMG/M
3300025022\|Ga0210056_1092959	Not Available	1221	Open in IMG/M
3300025022\|Ga0210056_1122593	Not Available	993	Open in IMG/M
3300025022\|Ga0210056_1248300	Not Available	583	Open in IMG/M
3300025036\|Ga0210049_1138161	Not Available	1131	Open in IMG/M
3300025036\|Ga0210049_1210401	Not Available	811	Open in IMG/M
3300025036\|Ga0210049_1272790	Not Available	660	Open in IMG/M
3300025036\|Ga0210049_1273705	Not Available	658	Open in IMG/M
3300025036\|Ga0210049_1310253	Not Available	597	Open in IMG/M
3300025036\|Ga0210049_1310651	Not Available	596	Open in IMG/M
3300025036\|Ga0210049_1350871	Not Available	542	Open in IMG/M
3300025036\|Ga0210049_1386923	Not Available	503	Open in IMG/M
3300025811\|Ga0210004_1077817	Not Available	954	Open in IMG/M
3300025811\|Ga0210004_1130154	Not Available	641	Open in IMG/M
3300025811\|Ga0210004_1141755	Not Available	601	Open in IMG/M
3300025811\|Ga0210004_1170510	Not Available	522	Open in IMG/M
3300025837\|Ga0210016_1201723	Not Available	776	Open in IMG/M
3300025837\|Ga0210016_1307068	Not Available	564	Open in IMG/M
3300025868\|Ga0210051_1082510	Not Available	1881	Open in IMG/M
3300025868\|Ga0210051_1176687	Not Available	1007	Open in IMG/M
3300025868\|Ga0210051_1371807	Not Available	550	Open in IMG/M
3300025868\|Ga0210051_1371885	Not Available	550	Open in IMG/M
3300025868\|Ga0210051_1398287	Not Available	521	Open in IMG/M
3300025868\|Ga0210051_1405240	Not Available	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	93.52%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	6.48%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	93.52%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	6.48%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	53.70%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	39.81%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	6.48%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004107	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (version 2)	Environmental	Open in IMG/M
3300004108	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.8 um filter (version 2)	Environmental	Open in IMG/M
3300004149	Groundwater microbial communities from aquifer - Crystal Geyser CG03_land_8/20/14_0.80	Environmental	Open in IMG/M
3300004210	Groundwater microbial communities from aquifer - Crystal Geyser CG10_big_fil_rev_8/21/14_0.10	Environmental	Open in IMG/M
3300004212	Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00	Environmental	Open in IMG/M
3300004238	Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00	Environmental	Open in IMG/M
3300004239	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all	Environmental	Open in IMG/M
3300005235	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20	Environmental	Open in IMG/M
3300005236	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80	Environmental	Open in IMG/M
3300007965	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-25	Environmental	Open in IMG/M
3300008002	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14	Environmental	Open in IMG/M
3300008004	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19	Environmental	Open in IMG/M
3300008007	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-10	Environmental	Open in IMG/M
3300008009	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-18	Environmental	Open in IMG/M
3300008010	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21	Environmental	Open in IMG/M
3300008085	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02	Environmental	Open in IMG/M
3300008094	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11	Environmental	Open in IMG/M
3300008255	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t	Environmental	Open in IMG/M
3300014060	Freshwater microbial communities from Crystal Geyser, Utah, USA - CG_3.0	Environmental	Open in IMG/M
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental	Open in IMG/M
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental	Open in IMG/M
3300020171	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG	Environmental	Open in IMG/M
3300024995	Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 (SPAdes)	Environmental	Open in IMG/M
3300025005	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (SPAdes)	Environmental	Open in IMG/M
3300025018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)	Environmental	Open in IMG/M
3300025021	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 (SPAdes)	Environmental	Open in IMG/M
3300025022	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)	Environmental	Open in IMG/M
3300025036	Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)	Environmental	Open in IMG/M
3300025811	Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/8/14 3 um filter (SPAdes)	Environmental	Open in IMG/M
3300025837	Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 (SPAdes)	Environmental	Open in IMG/M
3300025868	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0065179_10634492	3300004107	Groundwater	MEITGFISIGLMIVIQIGYFAFSFGKLNEKVTSIDKRFNDLSHSYEKIEGRLGKLEGRK*
Ga0065179_11132512	3300004107	Groundwater	VEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK*
Ga0065179_11180611	3300004107	Groundwater	MEANALAGFVSIGLLVVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEERLGKMEGRK*
Ga0065181_10903462	3300004108	Groundwater	VEIAGFISIGLLVVVQIGYFAYSFGKLDGTVKSIDKRLNDLTHRYDVMEERIGKLEGRK*
Ga0065181_11501901	3300004108	Groundwater	MEITGFLSLGMLIIIQIGYFAYNYGQLNGKVANIDKRLNDLSHSVATIEERIGKLEGRK*
Ga0066632_101159333	3300004149	Groundwater	MELVGFTSIAVLVVIQIGYFAYSFGKLDGTVKSIDKRLNDLTHQFSEVERRVGKLEGRK*
Ga0066639_106221281	3300004210	Groundwater	VEIVGFVSIGLLVVIQIGYFAYTFGKLNGKVASIDKRLNDLAHRYDRMEERIGKREGRK*
Ga0066631_102295533	3300004212	Groundwater	MEIVGFSSIGLLVVIQISYFAYSFGKLNGKVGSIDKRLNDLSHRYDMMEQRIGKLEGRQ*
Ga0066631_103260603	3300004212	Groundwater	MEANALAGFVSIGVLVVIQIALFSYGYGKLNGKVASIDRRLNDLTHRYDRMEDRIGKLEGRK*
Ga0066635_102665243	3300004238	Groundwater	MEITGFVSIGILVVIQIGYFAYSFGKLNGKVSSIDKRLNDLSHRYDMMEGRIGKLEGRK*
Ga0066635_103049211	3300004238	Groundwater	MEVAGFISVGMLVVIQIAYFAYTFGKLDGRVQSIDKRLNDLSHRLDRIEERIHNLEVKSG
Ga0066635_103173883	3300004238	Groundwater	MGANALAGFISIGLLVAIQIGYFAFAFGKLDGTVKSIDRRLNDLTHRYDRMEERIGKLEGR*
Ga0066635_103749102	3300004238	Groundwater	MMEITSFISIGLLVVIQIAYFAFTFGRLDDRVSSIDKRLNDLSHQYARIEGRLGKLEGRK
Ga0066635_104076942	3300004238	Groundwater	VNELAPFIGIGVLVIIQIGYFAYTFGRLNGKVDSIDRRLNDLSHRFDEVEGRVGRLEGRKA*
Ga0066635_104091852	3300004238	Groundwater	MEGVGFISIGLLVVIQISYFAYSFGKLNGKVSSIDKRLNDLSHRYDVMEERIGRLEGRK*
Ga0066635_104896422	3300004238	Groundwater	MEITGFISIGMLVVIQISYFAYSFGKLNGKVSSIDKQLNDLSHRYDMMEKRIGKLEGRK*
Ga0066635_105149732	3300004238	Groundwater	MEITGFVSIGMLIVVQIVIFAYNFGKLNGKVASIDKRLNDLSHNLIKIEERVGKLEGRK*
Ga0066650_102246093	3300004239	Groundwater	MEITGFISIGLLVVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDKVEDRIGKLEGRK*
Ga0066637_101009283	3300005235	Groundwater	VRGLVEISGFVSIGMLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK*
Ga0066637_101693932	3300005235	Groundwater	VEITGFLSVGMLIVIQIGYFAYTFGKLNGKVDSIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0066636_101051453	3300005236	Groundwater	VRGLVEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK*
Ga0066636_101428833	3300005236	Groundwater	VEITGFVSIGVLIVIQIGYFAYTYGQLNDKVANIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0066636_101693242	3300005236	Groundwater	MEITGFVSIGVLVVIQIALFSYGYGKLNGKVASIDRRLNDLTHRYDRMEERIGKLEGRK*
Ga0066636_101877421	3300005236	Groundwater	MEANALAGFVSIGLLVVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEERLGKME
Ga0066636_102991483	3300005236	Groundwater	VEITGFISIGVLIVVQIGYFAYTFGKMNGKVDSIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0066636_103028142	3300005236	Groundwater	VEITGFISIGVLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100401_12944142	3300007965	Aquifer	VRGLMEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK*
Ga0100390_101212982	3300008002	Aquifer	VEITGFVSIGVLIVIQIGYFAYNYGRLNDKVANIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100390_104536261	3300008002	Aquifer	GKIIEITGFLSLGMLIVIQLGYFAYSFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100395_11507221	3300008004	Aquifer	MEITGFLSLGMLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100386_102945833	3300008007	Aquifer	VEIAGFISIGLLVVVQIGYFAYSFGKLDGTVKSIDKRLNDLTHHFNEVERRVGKLEGRK*
Ga0100394_11835773	3300008009	Aquifer	VEITGFVSIGVLIVNQIGYFAYNYGRLNDKVANIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100397_10557703	3300008010	Aquifer	TGFVSIGVLIVIQISYFAYTLGKRHGKVDGIDKRLNDLSHSVATIERRIGKLEGRK*
Ga0100397_12668542	3300008010	Aquifer	VEITGFISIGVLIVIQIGYFAYNYGRLNDKVANIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100378_14604042	3300008085	Aquifer	VEITGFVSIGVLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100387_101149572	3300008094	Aquifer	MLIVIQIGYFAYTFGKLNGKVDSIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0100403_10372173	3300008255	Aquifer	MELTGFISIFVLVVVQIVYFAFSFGKLNGNVSSIDKRLNDLSHSIRRIEERVGKLEGRK*
Ga0100403_10615193	3300008255	Aquifer	MEITGFVSVGILVVIQIGYFAYSFGKLNGKVSSIDKRLNDLSHRYDMMEGRIGKLEGRK*
Ga0100403_10627752	3300008255	Aquifer	MELIGFLSLGVLVVIQIAYFAYTFGKLNGKVASIDRRLNDLTHRYDRMEERIHELEVRK*
Ga0100403_10708505	3300008255	Aquifer	MELVGFISIAVLVVIQISYFAYSFGKLDGTVKSIDKRLNDLTHQFSEVERRVGKLEGRK*
Ga0100403_10716812	3300008255	Aquifer	MMEITSFISIGLLVVIQIAYFAFTFGRLDDRVSSIDKRLNDLSHQYARIEERLGKLEGRK
Ga0100403_10754381	3300008255	Aquifer	MDINILLGFITIGVLIGIQITYFAFTFGKLNGKVASIDKRLNDLTHRYDRMEERLGKMEGRK*
Ga0100403_10757621	3300008255	Aquifer	MEITGFVSIGLLVVIQISYFAYTFGKMNGTVKSIDKRLNDLTHRYDRMEDRIEKLEGRK*
Ga0100403_10979262	3300008255	Aquifer	MTEIVGFIGIAVLVVTQIAYAAYSFGKLNGKVASIDKRLNDLTHRYDIMEQRIGKLEGRK
Ga0100403_11024132	3300008255	Aquifer	LVRVKEGREVMELTGFVGIGILVIIQIAYFAFTFGKLNGKVSSIDKRLNDLTHRYDRMEDRIGKLEGRK*
Ga0100403_11188044	3300008255	Aquifer	MEANALAGFVSIGALVVIQITYFAYSFGKLNGKVASIDKRLNDLTHRYDRMEERLGKLEGRK*
Ga0100403_11412252	3300008255	Aquifer	MELAGFVSVGALVVIQLVAFAYGYGKLNGKVASIDKRLNDLSHLYENIEGRLGKLEGRK*
Ga0100403_11586661	3300008255	Aquifer	MEANALAGFVSIGLLVVIQIVYFAYTFGKMNGTVKSIDKRLNDLTHRYDRMEERLGKLEGRK*
Ga0100403_11767443	3300008255	Aquifer	MAGFVSIGLLVAIQIGYFAFTFGKLNGTVSSIDKRLNDLSHRYDRMEQRIGKLEGRK*
Ga0100403_12020862	3300008255	Aquifer	MEANALAGFVSIGVLVVIQITYFAYSFGKLNGKVASIDKRLNDLTHRYDRMEERIGKLEGRK*
Ga0100403_12243002	3300008255	Aquifer	MEIVGFSSIGLLVIIQISYFAYSFGQLNGKVGSIDKRLNDLSHRYDMMEQRIGKLEGRQ*
Ga0100403_12360551	3300008255	Aquifer	MELTGFISIFVLVVVQIVYFAFSFGKLNGNVSSIDKRLNDLSHSIIKIEERVGKLEGRK*
Ga0100403_12398202	3300008255	Aquifer	MEIAGFISVGMLVVIQIAYFAYTFGKLDGRVQSIEKRLNDLSHRLDRIEERIHNLEVKSG
Ga0100403_12831542	3300008255	Aquifer	MEIAGFIGVGILVIVQIAYFAYTFGQLNGKVSSIDKRLNDLSHRFNQVEQRVGKLEGRK*
Ga0100403_12908313	3300008255	Aquifer	MEITGFVSIGVLVVIQIALFSYGYGKLNGKVASIDRRLNDLTHRYDRMEDRIGKLE
Ga0100403_13003011	3300008255	Aquifer	MEITGFVSIGLLVVIQISYFAYSFGKLNGKVASIDKRLNDLTHRYDKME
Ga0100403_13156413	3300008255	Aquifer	MEITGFITIGLLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK*
Ga0100403_13382452	3300008255	Aquifer	MEIAGFISIAVLVVIQIGYFAYSFGKLDGTVKSIDKRLNDLTHQFSEVERRVGKLEGRK*
Ga0119967_100966123	3300014060	Freshwater	MEIAGFISIGLMIVIQIGYFAFSFGKLNEKVTSIDKRFNDLSHSYEKIEGRLGKLEGRK*
Ga0119967_101088883	3300014060	Freshwater	GFISIAVLVVIQIGYFAYSFGKLDGTVKSIDKRLNDLTHRYDIMEERIGKLEGRK*
Ga0119967_101822144	3300014060	Freshwater	MEITGFISIGLLVVIQISYFAYSFGKLNGKVASIDKRLNDLTHRYDKMEERIGKLEGRK*
Ga0119967_102020411	3300014060	Freshwater	SGFVSIGVLIVIQIGYFAYTFGKLNGKVDSIDKRLNDLSHSVAKIEERIGKLEGRK*
Ga0119967_102917842	3300014060	Freshwater	MEITGFISIALLVVIQIAYFAYTFGKLNDKVSNIDKRLNDLSHRYDKVEDRIGTLEGRK*
Ga0119967_103242742	3300014060	Freshwater	MEIVGFSSIGLLVVIQISYFAYSFGQLNGKVGSIDKRLNDLSHRYDMMEQRIGKLEGRQ*
Ga0119967_103633942	3300014060	Freshwater	MEANALAGFVSIGVLVVIQIALFSYGYGKLNGKVASIDRRLNDLTHRYDRMEERIHELEVKK*
Ga0180008_10261493	3300014613	Groundwater	MEVGFIGLGIMVVIQIALFAYGYGKLNDKVGNIDKRLNDLSHRFDRVEDRVGKLEGRK*
Ga0180009_101610714	3300015370	Groundwater	MNELTGFIGIGVLIIVQISYFAYAFGTLNSKVRSIDKRLNDLSHRFDRVEDRVGKLEGRK
Ga0180009_103504122	3300015370	Groundwater	MNELAGFIGIGILVVIQIAFFAFGYGKLNGKVSSIDKRLNDLSHRFDQVEDRVGKLEGRK
Ga0180009_104015552	3300015370	Groundwater	MELIGFFSIGVLIVLQIATFAYSYGKINQKVASIDKRLNDISHYTNKMENRIGKLEGRE*
Ga0180732_12455512	3300020171	Groundwater	MNELTGFIGIGVLIVIQISYFAYAFGTLNSKVRSIDKRLNDLSHRFDRVEDRVGKLEGRK
Ga0210018_10584262	3300024995	Groundwater	VEITGFLSVGMLIVIQIGYFAYTFGKLNGKVDSIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210018_10896311	3300024995	Groundwater	VIQIGYFAYNYGQLNGKVANIDKRLNDLSHSVATIEERIGKLEGRK
Ga0210005_10519012	3300025005	Groundwater	VEITGFLSVGMLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210043_10298003	3300025018	Aquifer	VRGLVEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK
Ga0210043_10480082	3300025018	Aquifer	MEGVGFISIGLLVVIQISYFAYSFGKLNGKVSSIDKRLNDLSHRYDIVEERIGKLEGRK
Ga0210043_10533083	3300025018	Aquifer	MEITGFISIGLMIVIQIGYFAFSFGKLNEKVTSIDKRFNDLSHSYEKIEGRLGKLEGRK
Ga0210043_10641101	3300025018	Aquifer	GILVVIQIGYFAYSFGKLNGKVSSIDKRLNDLSHRYDMMEGRIGKLEGRK
Ga0210043_11168132	3300025018	Aquifer	MEANALAGFVSIGVLVVIQITYFAYSFGKLNGKVASIDKRLNDLTHRYDRMEERIGKLEGRR
Ga0210043_11198462	3300025018	Aquifer	MELTGFISIFVLVVVQIVYFAFSFGKLNGNVSSIDKRLNDLSHSIRRIEERVGKLEGRK
Ga0210043_11203171	3300025018	Aquifer	FVSIGVLVVIQITYFAYSFGKLNGKVASIDKRLNDLTHRYDRMEERLGKLEGRK
Ga0210043_11299472	3300025018	Aquifer	MELAGFVSVGALVVIQLVAFAYGYGKLNGKVASIDKRLNDLSHLYENIEGRLGKLEGRK
Ga0210043_11417442	3300025018	Aquifer	VMEIAGFISIGLLVIIQISYFAYTFGKLIGRVSSIDKRLNDLSHRYDMMEQRIGKLEGRQ
Ga0210043_12009221	3300025018	Aquifer	MMEITSFISIGLLVVIQIAYFAFTFGRLDDRVSSIDKRLNDLSHQYARIEGRLG
Ga0210043_12024172	3300025018	Aquifer	MELVGFISIAVLVVIQIGYFAYSFGKLDGTVKSIDKRLNDLTHQFSEVERRVGKLEGRK
Ga0210017_11318211	3300025021	Groundwater	MEITGFITIGLLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK
Ga0210056_10929593	3300025022	Groundwater	MEITGFISIGLMIVIQIGYFAFSFGKLNERVTSIDKRFNDLSHSYEKIEGRLGKLEGRK
Ga0210056_11225933	3300025022	Groundwater	VEITGFVSIGVLIVIQIGYFAYNYGRLDDKVANIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210056_12483001	3300025022	Groundwater	MVEITGFVSIGVLIAIQIGYFAYNYGRLNDKVANIDKRLNDLSHSIARIEERIGKLEGRK
Ga0210049_11381612	3300025036	Groundwater	MEVNALAGFVSIGLLVVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEERLGKMEGRK
Ga0210049_12104012	3300025036	Groundwater	MEITGFVSIGILVVIQIGYFAYSFGKLNGKVSSIDKRLNDLSHRYDMMEGRIGKLEGRK
Ga0210049_12727903	3300025036	Groundwater	VEITGFLSVGMLIVIQIGYFAYTFGKLNGKVDSIDKRLNDLSHSVAKIEERIG
Ga0210049_12737052	3300025036	Groundwater	MEITGFISIGLLVVIQISYFAYSFGKLNGKVASIDKRLNDLTHRYDKMEERIGKLEGRK
Ga0210049_13102533	3300025036	Groundwater	MEANALAGFVSIGLLVVIQIAYFAYTFGRLNGKVASIDKRLNDLTHRYDRMEERLGKMEGRK
Ga0210049_13106513	3300025036	Groundwater	MEITGFITIGLLIVIQICYFTYAFGKLDGKVAGIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210049_13508712	3300025036	Groundwater	IQIGYFAYTYGQLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210049_13869232	3300025036	Groundwater	MEITGFLSLGMLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRK
Ga0210004_10778171	3300025811	Groundwater	EIVEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGR
Ga0210004_11301541	3300025811	Groundwater	MEANALAGFVSIGVLVVIQITYFAYSFGKLNGKVASIDKRLNDLTHRYDRMEERLGKMEGRK
Ga0210004_11417552	3300025811	Groundwater	EIAGFISIGLLVVVQIGYFAYSFGKLDGTVKSIDKRLNDLTHRYDVMEERIGKLEGRK
Ga0210004_11705102	3300025811	Groundwater	ISIGLLVVIQISYFAYSFGKLNGKVASIDKRLNDLTHRYDKMEERIGKLEGRK
Ga0210016_12017233	3300025837	Groundwater	IGLMIVIQIGYSAFLFGKLNEKVTSIDKRFNDLSHSYEKIEGRLGKLEGRK
Ga0210016_13070682	3300025837	Groundwater	SGGELHRFPQVRGLVEISGFVSIGVLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEGRK
Ga0210051_10825105	3300025868	Groundwater	MEITGFITIGLLIVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGRMEDRK
Ga0210051_11766871	3300025868	Groundwater	VEITGFVTVGLLIVIQIGYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIG
Ga0210051_13718071	3300025868	Groundwater	MEITGFISIGVLIVIQIGYFAYTFGKLNGKVDGIDKRLNDLSHSVAKIEERIGKLEGRQ
Ga0210051_13718851	3300025868	Groundwater	MEANALAGFVSIGLLVVIQIAYFAYTFGKLNGKVASIDKRLNDLTHRYDRMEDRIGMLEGRK
Ga0210051_13982872	3300025868	Groundwater	VEIAGFISIGLLVVVQIGYFAYSFGKLDGTVKSIDKRLNDLTHRYNVMEERIGKLEGRK
Ga0210051_14052402	3300025868	Groundwater	MELVGFTSIAVLVVIQIGYFAYSFGKLDGTVKSIDKRLNDLTHHFNEVERRVGKLEGRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089865

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences