3300003473: Fe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling.

Overview

Basic Information

• IMG/M Taxon OID: 3300003473
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111407 | Gp0099083 | Ga0059302
• Sample Name: Fe-reducing enrichment culture from wetland. Sample 3 with anaerobic and aerobic cycling.
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 476662606
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	5
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → bayou → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Dorn Creek (Dane County, WI)
• Coordinates
  • Lat. (^o): 43.135131
  • Long. (^o): -89.441777
  • Alt. (m): N/A
  • Depth (m): 0 to .3048

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023288	Metagenome	210	Y
F054979	Metagenome / Metatranscriptome	139	Y
F063150	Metagenome	130	Y
F075038	Metagenome / Metatranscriptome	119	Y
F096265	Metagenome / Metatranscriptome	105	Y
F096266	Metagenome	105	Y
F100042	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
FeGluAir_10014839	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1478
FeGluAir_10039860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	1189
FeGluAir_10042386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2131
FeGluAir_10045255	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2053
FeGluAir_10048025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2416
FeGluAir_10069205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2588
FeGluAir_10102479	All Organisms → cellular organisms → Bacteria	1517
FeGluAir_10150439	All Organisms → cellular organisms → Bacteria	1249
FeGluAir_10156313	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	729
FeGluAir_10176428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	914
FeGluAir_10189755	Not Available	511
FeGluAir_10205680	Not Available	721
FeGluAir_10211490	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2406
FeGluAir_10251750	All Organisms → cellular organisms → Bacteria	1180
FeGluAir_10268769	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	867
FeGluAir_10315479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	966
FeGluAir_10489991	All Organisms → cellular organisms → Bacteria	803
FeGluAir_10501038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1002

Sequences

Scaffold ID	Protein ID	Family	Sequence
FeGluAir_10014839	FeGluAir_100148393	F096266	MIDARIVFLLLTALLLSILVAIAVATFRKNRRQKLEDPKYRMLKDD*
FeGluAir_10039860	FeGluAir_100398603	F063150	MRLSIVLAALLIAGTAQATSYVPQFPQGLEQFTTIEGIKFNDASGKHNPPSIPKSWKLISVSNGEKANANNLWFQDSDGSVYLLQGFTSRNKFIIHEHVYKIPAK*
FeGluAir_10042386	FeGluAir_100423863	F096266	MIDARLVFLLLTTLLLAILSVIAVVTLRKNRRQKLEEPKYRMLKDD*
FeGluAir_10045255	FeGluAir_100452552	F096266	MIDARLVFLLLTALLLLILVAIAVATFRKNRKQKLEDPKYRMLKDD*
FeGluAir_10048025	FeGluAir_100480253	F096266	MIDARIVFLLLTALMLAILTAIAVATLRKKRKQKLEEPKYRMLKDD*
FeGluAir_10069205	FeGluAir_100692054	F096266	MTMDARFVFLLLTGFLLAVLVAITVVTLSKRRKQKLEEPKHRMLEDD*
FeGluAir_10102479	FeGluAir_101024792	F096266	MANRMIEARIVFLLLTALMLAILTAIAVTTLRKKSKQKLEEPKYRMLKDD*
FeGluAir_10150439	FeGluAir_101504391	F063150	MRIFLAITMTVFITPVAWATSYPLPAPPPVLEEFTAVEAVKFRDAQGTVNPKSIPKSWKLISVSTGEKSNSSNMWFQDSDGSIYLLQGFTSQNKFFIHEKVYKIPAK*
FeGluAir_10156313	FeGluAir_101563132	F063150	MRLFLAITIIVFITPAAWATSYPLPVPPPVPKEFISVEAVKFRDVQATNNSPAIPKSWKLISVSNGENSNSSNLWFQDTNGSVYLLQGFTSQNKFILHENMYRIPAK*
FeGluAir_10176428	FeGluAir_101764282	F096265	MAYKKLLFTVLFISAVFLVXLTKQDTSPKEITVDQQVETKQDRKIRPVQGLRIVELSENPARMVIKATDLNRKEPAPTVATDK*
FeGluAir_10189755	FeGluAir_101897551	F023288	WAERLEETMKGHSADRRWGFWLADHGLAMGGLALLAVGAATSWWAMSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRKDFGFDIPFAFKVRRGERVLLFVREEDPERGVWSDVYTVLDRPKGTDGFEPCWGLPPTPIPPGWSLRGRVPVDDLQFEDYERSTYVTRGSL
FeGluAir_10205680	FeGluAir_102056801	F054979	MVIESAAEKFGVPGEVLDLIGRDFISQMVEEFPSLLLPPIMSTLKQEYVRNGLEWVRQNVLPLQKHFLVLKHMYGV*
FeGluAir_10211490	FeGluAir_102114902	F096266	MMDARIVFLLLTGFLLAILIAIAVVTLNKSRKQKLEEPKHRMLEDD*
FeGluAir_10251750	FeGluAir_102517501	F096266	MIDARFVFLLLTALLLAILAAIAVVTLRKSRKQALEEPKYRMLKDD*
FeGluAir_10268769	FeGluAir_102687692	F096266	IFLLITAILLAILTVIAVVTLRKKRRQKLEEPKYRMLEDD*
FeGluAir_10315479	FeGluAir_103154791	F063150	TSYVPQLPQGLEEFTTIEGIKFKDARGTKNPPSIPKSWKLISVSSGEMSNSNNLWFQDVDGSVYLLQGFMSQSKFIIHEHVYKILAK*
FeGluAir_10489991	FeGluAir_104899911	F096266	MIDPRIVFLLLTALMLAILTVIAVATLRKHRKKKLEEPKYRMLEDD*
FeGluAir_10501038	FeGluAir_105010382	F075038	MANTWEIRGGRVTVVEDASTASLVVVARDLKDRDSKIAVLEEIVRKMKG*
FeGluAir_10556079	FeGluAir_105560791	F100042	VSPMSRLKTLARPTGVGSALTAYGMPIEGRDEWLAAVARLLA*