Metagenome Family F083869

Overview

Basic Information

• Family ID: F083869
• Family Type: Metagenome
• Number of Sequences: 112
• Average Sequence Length: 42 residues
• Representative Sequence: MTSFTDNSFPYVLICSTFGTIVSLASVWIVTAQSFAPVLGA
• Number of Associated Samples: 87
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 78
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (98.214 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand (17.857 % of family members)
• Environment Ontology (ENVO): Unclassified (22.321 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (30.357 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.83%
  β-sheet: 0.00%
  Coil/Unstructured: 52.17%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF10590	PNP_phzG_C	10.71
PF13188	PAS_8	8.93
PF13561	adh_short_C2	3.57
PF13545	HTH_Crp_2	3.57
PF00753	Lactamase_B	3.57
PF13406	SLT_2	2.68
PF14023	DUF4239	2.68
PF13442	Cytochrome_CBB3	2.68
PF02861	Clp_N	1.79
PF00211	Guanylate_cyc	1.79
PF00027	cNMP_binding	1.79
PF07386	DUF1499	1.79
PF00196	GerE	1.79
PF00989	PAS	0.89
PF09992	NAGPA	0.89
PF05239	PRC	0.89
PF07221	GlcNAc_2-epim	0.89
PF01264	Chorismate_synt	0.89
PF00378	ECH_1	0.89
PF04679	DNA_ligase_A_C	0.89
PF04311	DUF459	0.89
PF05231	MASE1	0.89
PF00006	ATP-synt_ab	0.89
PF03928	HbpS-like	0.89
PF08447	PAS_3	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	1.79
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.79
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	1.79
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	0.89
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.89
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.89
COG2942	Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family	Carbohydrate transport and metabolism [G]	0.89
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.89
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
All Organisms	root	All Organisms	1.79 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
cellular organisms	root	All Organisms → cellular organisms	1.79 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.79 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.21 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300006865|Ga0073934_10082852	All Organisms → cellular organisms → Bacteria	2533
3300013105|Ga0157369_10053886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	4345

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.82%
Host-Associated	Host-Associated	15.18%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.75%
Aquatic	Environmental → Aquatic	16.07%
Plants	Host-Associated → Plants	15.18%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.75%
Freshwater	Environmental → Aquatic → Freshwater	11.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.79%
Sediment	Environmental → Aquatic → Sediment	1.79%
Marine	Environmental → Aquatic → Marine	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Rhizome	Host-Associated → Plants → Rhizome	0.89%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.07%
Sand	Environmental → Terrestrial → Soil → Sand	17.86%
Loam	Environmental → Terrestrial → Soil → Loam	8.04%
Lake	Environmental → Aquatic → Freshwater → Lake	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.46%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.32%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	17.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	12.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.68%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	17.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	12.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	5.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.79%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental
3300002123	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3	Environmental
3300002149	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2	Environmental
3300002243	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2	Environmental
3300003322	Sugarcane root Sample L2	Host-Associated
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental
3300025146	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1	Environmental
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental
3300025310	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)	Environmental
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300027948	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)	Environmental
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_06984182	2228664022	Soil	MTSSTDNSSLYVLISSTFGTIVGLAAVWIVTAQSFTPVLGA
C687J26616_100130452	3300002120	Soil	MTDNSFPYVLICSTFGTIVSLASVWIVTAQSFAPVLGA*
C687J26634_101206103	3300002123	Soil	NSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA*
C687J26657_100120216	3300002149	Soil	MTSFTDNSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA*
C687J29039_102437813	3300002243	Soil	REELDMTSFTDNSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA*
rootL2_103625442	3300003322	Sugarcane Root And Bulk Soil	MTRSITDTKFPYVLVCSTFGAIVSLASVWLVTAITYAPSVVA*
soilH2_100269091	3300003324	Sugarcane Root And Bulk Soil	MEDFAMTRSITDTKFPYVLVCSTFGAIVSLASVWLVTAITYAPSVVA*
Ga0063356_1007003471	3300004463	Arabidopsis Thaliana Rhizosphere	DFAMTRSITDTKFPYVLVCSTFGAIVSLASAWLVTALTYAPVVVA*
Ga0063356_1015106311	3300004463	Arabidopsis Thaliana Rhizosphere	MTSFTDNSFPYVLICSIFATVVSLASVWIVTAQSFAPALVA*
Ga0063356_1037088052	3300004463	Arabidopsis Thaliana Rhizosphere	MTSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFAPMVGA*
Ga0069718_114881802	3300004481	Sediment	MTRSDPFAADRSFPCVLVCSTFATILSLAAVWISTAASLSPVVGA*
Ga0069718_159546971	3300004481	Sediment	MTSFTDNSFPYVLICSTFTAVVSLASVWIVTAQSFAPALVA*
Ga0071328_1099782	3300005045	Permafrost	MTRSTTDTSFPYVLICSTFGTIVSLASVWLATSLTYAPMIVA*
Ga0068996_100889991	3300005218	Natural And Restored Wetlands	ALSGNLEEPEMTSFTDNSFPYVLVCSTLGTVISLAAVWISTAITYAPVMVA*
Ga0070676_100604785	3300005328	Miscanthus Rhizosphere	MTSSTDNSFPYVLVCSTLGTIVSLASVGFATALSFAPMVGA*
Ga0066388_1005369492	3300005332	Tropical Forest Soil	MREREELEMTSSTGNSSLYVLISSTFGTIVGLAAVWIVTAQSFMPVLGA*
Ga0066388_1054791572	3300005332	Tropical Forest Soil	MTNYTDTSFPYVLICSTLGTIVSLASVWIVSVHTYAPALVA*
Ga0068852_1005349163	3300005616	Corn Rhizosphere	RTTVMTSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFAPMVGA*
Ga0066905_1007360352	3300005713	Tropical Forest Soil	MTSSTDNSSLYVLISSTFGTIVGLAAVWIVTVQSFTPVLGA*
Ga0081455_100318663	3300005937	Tabebuia Heterophylla Rhizosphere	MTRTVRTITDTSFPYVLVCSTFGAIVSLASVWLATSLTYAPMLVA*
Ga0075428_1009155301	3300006844	Populus Rhizosphere	MTSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFAPMVG
Ga0073934_100828521	3300006865	Hot Spring Sediment	MTSFTDNSFPYVLICSTFGAILSLASVWIATAQSYAPALVS*
Ga0075434_1012876882	3300006871	Populus Rhizosphere	MTSSTDNSSLYVLISSTFGTIVGLAAVWIVTVQSFTPMLGA*
Ga0105106_100480142	3300009078	Freshwater Sediment	MTSFTDNSFPYVLICSTFTAVVSLASVWIVTAQSFAPTLVA*
Ga0099827_115270191	3300009090	Vadose Zone Soil	MMMKTSSTDNSFPYVLVFGTFATIVSLASAWIFTALSIAPVVGD*
Ga0105091_102108642	3300009146	Freshwater Sediment	MTSFTDNSFPYVLVCSTFATIVSLASVWISTAQSFTPVLGA*
Ga0105094_108501762	3300009153	Freshwater Sediment	MTGVTDNSFPYVLICSTFTAVVGLASVWIVTAQSFAPALVA*
Ga0105237_108218742	3300009545	Corn Rhizosphere	MTSSTENSPLYVLISSTFGTIVGLAAVWIVTVQSFTPMLGA*
Ga0105056_10256151	3300009801	Groundwater Sand	TTDNSFPYVLVCSTLGTIISLASVWIATVQSFAPGLVA*
Ga0105056_10615861	3300009801	Groundwater Sand	MTHSTDNQDRSFPYVLVCSTFGTIVSLASVWLATAISYAPMIGA*
Ga0105065_10209863	3300009803	Groundwater Sand	MTHSTDNQDRSFPYVLVCSMFGTIVSLASVWLATAISYAPMIGA*
Ga0105061_11022001	3300009807	Groundwater Sand	MTDHSFPYVLLCSTFGTIVSLASVWIATAQSFAPAIGA*
Ga0105082_10525882	3300009814	Groundwater Sand	MTDHSFPYVLICSTSGTIVSLASVWIATAQSFAPVLGA*
Ga0105076_10106762	3300009816	Groundwater Sand	MTDHSFPYVLLCSTFGTIVSLASVWIATAQSFAPVLGA*
Ga0105062_10067573	3300009817	Groundwater Sand	MTSFTDNSFPYVLICSTFGTIVSLATVWIATAQSFAPVLGA*
Ga0105062_10163411	3300009817	Groundwater Sand	MTDHSFPYVLLCSTFGTIVSLASVWIATAQSFAPV
Ga0105072_10952062	3300009818	Groundwater Sand	MTHSTDNQDRSFPYVLVCSTFGTIVSLASVWLATAISYAPMISA*
Ga0105087_10410901	3300009819	Groundwater Sand	MTSFTDNSFPYVLICSTFGTIVSLATVWIATAQSFAPV
Ga0105085_10714292	3300009820	Groundwater Sand	MTHSTDNQDRSFPYVLVCSMFGTVVSLASVWLATAISYAPMIGA*
Ga0105078_10659131	3300009823	Groundwater Sand	IFEMTDHSFPYVLICSTSGTIVSLASVWIATAQSFTPVIGA*
Ga0105058_10622741	3300009837	Groundwater Sand	MTSFTDNSFPYVLICSTLATIVSLASVWIVTAQTYTPALVA*
Ga0105246_118198603	3300011119	Miscanthus Rhizosphere	MARSITDTKFPYVLICSTLGAIVSLASVWLITAITYAPTVVA*
Ga0164241_110082002	3300012943	Soil	MTSFTDNSFPYVLICSTFTAVVSLASVWIVTAQSFDPALVA
Ga0164302_106164363	3300012961	Soil	AVGVVRAGAVMTSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFAPMVGA*
Ga0153916_119061422	3300012964	Freshwater Wetlands	MTSFTDNSFPYVLVCSTFATIVSLASVWLATAQSFSPVLGA*
Ga0157369_100538866	3300013105	Corn Rhizosphere	MTSSTDSSFPYVLVCSTLGTIVSLASVWFATALSFAPMVGA*
Ga0163163_118035331	3300014325	Switchgrass Rhizosphere	MTDPNDNRFPYVLLCSTFGTIVSLASVWLETYHAFAPVV
Ga0157379_111464952	3300014968	Switchgrass Rhizosphere	MDSTSLDTRFPYVLLCSTFGAIISLASVWLVTSLAYGPALVA*
Ga0132255_1049603682	3300015374	Arabidopsis Rhizosphere	MTSFTDNSFPYVLVCSTFATIVSLASVWLPPAQSFTPVLGA*
Ga0182032_109277271	3300016357	Soil	ELEMTTSTDNSSLYVLISSTFGTVVGLAAVWIVTAQSIAPVLGA
Ga0187779_102235282	3300017959	Tropical Peatland	MTLAITDTSVPYVLVCSTFGAIVSLFSVWLVTSPTYAPPSVA
Ga0187780_100777163	3300017973	Tropical Peatland	MTLAITDTSVPYVLVCSTFGAIVSLFSVWLVTSPTYAPPSVAWET
Ga0184616_103278361	3300018055	Groundwater Sediment	IFAMTRSITDTSFPYALVCSTFGTIVSLASVWLATALTYAPMIVA
Ga0184609_100260793	3300018076	Groundwater Sediment	MTDNSFPYVLICSTFTTVVSLASVWIVTAQSFAPALVA
Ga0190272_100295323	3300018429	Soil	MTSFTDNSFPYVLICSTFTAVVSLASVWIVTAQSFAPALVA
Ga0190272_107747342	3300018429	Soil	MTRSTTDTSFPYVLICSTFGTIVSLASVWLATSLTYAPMIVA
Ga0190270_109765552	3300018469	Soil	MTSFTDNSFPYVLICSTFTAVVSLASVWIITAQSFAPALVA
Ga0173481_106378192	3300019356	Soil	MTSSTDNSSLYVLISSTFGTIVGLAAVWIVTVQSFTPMLGA
Ga0209322_100194926	3300025146	Soil	MTSFTDNSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA
Ga0209109_100220952	3300025160	Soil	MTDHSFPYVLICSTSGTIVSLASVWIATAQSFAPVLGA
Ga0209109_100634482	3300025160	Soil	MTDNSFPYVLICSTFGTIVSLASVWIVTAQSFAPVLGA
Ga0209108_100371521	3300025165	Soil	HSFPYVLICSTSGTIVSLASVWIATAQSFAPVLGA
Ga0209324_104623781	3300025174	Soil	EASREELDMTSFTDNSFPYVLICSTFGTIVSLASVWIVTVQSFAPVLGA
Ga0209172_101707563	3300025310	Hot Spring Sediment	MTSFTDNSFPYVLICSTFGAILSLASVWIATAQSYAPALVS
Ga0209321_101346912	3300025312	Soil	MTDNSFPYVLICSTSGTIVSLASVWIVTVQSFAPVLGA
Ga0209431_105807801	3300025313	Soil	MTSFTDNSFPYVLICSTLATIVSLASVWIVTAQTYTPALVA
Ga0209640_100525213	3300025324	Soil	MTSFTDNSFPYVLICSTFGTIVSLASVWIVTAQSFAPVLGA
Ga0207706_116288702	3300025933	Corn Rhizosphere	MTNFTDNSFPYVLICSTLATIISLASVWIVTAQSYAPALVA
Ga0256867_100126473	3300026535	Soil	MTSFTDNSFPYVLICSTFGAILSLASVWIVTAQSYAPVLVA
Ga0256867_100320871	3300026535	Soil	MTDNSFPYVLICSTFGTVVSLASVWIATAQSFTPVLGA
Ga0256867_100864952	3300026535	Soil	MTRSIVDTKFPYVLICSTFGAIVSLASVWLVTALTYAPVVVA
Ga0209875_10465141	3300027209	Groundwater Sand	QDGLERRNSKRIFEMTDHSFPYVLICSTSGTIVSLASVWIATAQSFAPVLGA
Ga0209842_10174324	3300027379	Groundwater Sand	MTRSITDASFPYVLVCSTFGAIVSLASVWLVTALTYAPVVVA
Ga0209887_10231672	3300027561	Groundwater Sand	MTHSTDNQDRSFPYVLVCSTFGTVVSLASVWLATAISYAPMIGA
Ga0209887_10611143	3300027561	Groundwater Sand	ERIFEMTDNSFPYVLICSTFGTIVSLASVWIATAQSFAPVLGA
Ga0209874_10286993	3300027577	Groundwater Sand	MTHSTDNQDRSFPYVLVCSMFATIVSLGSVWLATAISYAPMISA
Ga0214468_10221192	3300027647	Soil	MTRSIVDTKFPYVLICSTFGAIVSLASVWLVTAVTYAPVVVA
Ga0214468_10379342	3300027647	Soil	MTSFTDNSFPYVLICSTFGAILSLASVWIVTAQLYAPALVA
Ga0214468_10468583	3300027647	Soil	MPSTTDNSFPYVLICSTFGTVVSLASVWIATAQSFTPVLGA
Ga0256866_10130974	3300027650	Soil	KMTRSIVDTKFPYVLICSTFGAIVSLASVWLVTALTYAPVVVA
Ga0256866_10678803	3300027650	Soil	MPSTTDNSFPYVLICSTFGTIVSLAAVWIATAQSFAPVVGA
Ga0209590_109795211	3300027882	Vadose Zone Soil	MMKTSSTDNSFPYVLVFGTFATIVSLASAWIFTALSIAPVVGD
Ga0207428_108988222	3300027907	Populus Rhizosphere	TSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFAPMVGA
Ga0209858_10123511	3300027948	Groundwater Sand	SWAALREELDMTSFTDNSFPYVLICSTFGTIVSLATVWIATAQSFAPVLGA
Ga0209889_10642281	3300027952	Groundwater Sand	MTDNSFPYVLICSTFGTIVSLATVWIATAQSFAPVLGA
Ga0299907_100655364	3300030006	Soil	MTTTTDNSFPYVLICSTFGTIVSLASVWIATAQSFAPALGA
Ga0299907_100727612	3300030006	Soil	MTSTTDNSFPYVLICSTFGTIVSLAAVWIATAQSFAPVVGA
Ga0299906_110977261	3300030606	Soil	MTSFTDNSFPYVLICSTFGTIVSLATVWIATAQSFAPVLGA
Ga0302046_100394201	3300030620	Soil	GLERRNSERIFEMTDNSFPYVLICSTFGTIVSLASVWIVTAQSFAPVLGA
Ga0302046_101183865	3300030620	Soil	MTHSTDNQDRSFPYVLVCSTFATVVSLASVWIATAISYAPMMVA
Ga0302046_101917231	3300030620	Soil	MTRSITDKKFPYVLVCSTFGAIVSLASVWLVTALTYAPAVVA
Ga0299914_106457701	3300031228	Soil	MTSFTDNSFPSVLICSTFGAILSLASVWIVTAQSYAPALVA
Ga0299913_108842292	3300031229	Soil	HRSIVDTKFPYVLVCSTFGAIVSLASVWLVTALTYAPVVVA
Ga0299913_114308083	3300031229	Soil	IGLSEMRKRKTPMTRTTDTQDRSFPYVLVCSTAATIVSLASVWIATAISYAPVMVA
Ga0315291_101750124	3300031707	Sediment	MTSFTDTSFPYVLVCSTFGTILSLASVWIATVQSFGPVLGA
Ga0307469_106030971	3300031720	Hardwood Forest Soil	MTDNQDRSFPFVLVCSTLATVVSLASVWIATAVSYAPTMVA
Ga0315293_104667071	3300031746	Sediment	MTSFTDTSFPYVLVCSTFGTILSLASVWMATVQSFGPVLGA
Ga0315288_105296412	3300031772	Sediment	MTSFTDTSFPYVLVCSTFGTILSLASVWIATVQSISPVLGA
Ga0315290_115400221	3300031834	Sediment	DMTSFTDTSFPYVLVCSTFGTILSLASVWMATVQSFGPVLGA
Ga0214473_102980463	3300031949	Soil	MTRSIIDTKFPYVLVCSMFGAIVSLASVWLVTSLTYAPTLVA
Ga0214473_106374323	3300031949	Soil	MTSSTDNSLYVLVCSIIGTIISLAFVWMATAHSFAPVLGA
Ga0214473_109730731	3300031949	Soil	MTHSTDNQDRSFPYVLVCSMFGTIVSLASVWLATAISYAPMIGA
Ga0214473_111582451	3300031949	Soil	MTSTDNSFPYVLICSTLATIVSLASVWIVTPQTYAPA
Ga0214473_115143541	3300031949	Soil	MTRSITDTKFPYVLVCSTFGATVSLASVWLVTALTYAPAVVA
Ga0214473_117530403	3300031949	Soil	SERIFEMTDNSFPYVLICSTFGTIVSLASVWIATAQSFAPVLGA
Ga0214473_123130351	3300031949	Soil	MTDHSFPYVLLCSTFGTIVSLATVWIATAQSFAPVLGA
Ga0214473_123900382	3300031949	Soil	MTSFTDNSFPYVLICSTLATIVSLASVWIVTAQTYAPVLVA
Ga0315277_108932821	3300032118	Sediment	MTSFTDNSFPYVLICSTFGTILSLASVWIATVKSFSPVLGA
Ga0315283_114021931	3300032164	Sediment	MTSFTDTSFPYVLVCSTFGTILSLASVWIATVKSFSPVLGA
Ga0307472_1025744301	3300032205	Hardwood Forest Soil	AMTRSIIDTKFPYELVCSTFGAIVSLASVWLVTSLTYAPTLVA
Ga0310896_104910062	3300032211	Soil	MTSSTDNSFPYVLVCSTLGTIVSLASVWFATALSFATM
Ga0315287_102722251	3300032397	Sediment	MTSFTDTSFPYVLVCSTFGTILSLASVWIATVQSI