3300001634: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011

Overview

Basic Information

• IMG/M Taxon OID: 3300001634
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0085736 | Gp0057262 | Ga0003850
• Sample Name: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30356189
• Sequencing Scaffolds: 46
• Novel Protein Genes: 48
• Associated Families: 48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	12
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_17	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Harvard Forest LTER, Petersham, MA, USA
• Coordinates
  • Lat. (^o): 42.532967
  • Long. (^o): -72.209488
  • Alt. (m): N/A
  • Depth (m): 0 to .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000328	Metagenome / Metatranscriptome	1293	Y
F000364	Metagenome / Metatranscriptome	1229	Y
F000757	Metagenome / Metatranscriptome	905	Y
F001187	Metagenome / Metatranscriptome	754	Y
F001420	Metagenome / Metatranscriptome	698	Y
F003366	Metagenome / Metatranscriptome	491	Y
F003973	Metagenome / Metatranscriptome	459	Y
F004557	Metagenome / Metatranscriptome	433	Y
F004702	Metagenome / Metatranscriptome	427	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20245J16306_1000220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4032
JGI20245J16306_1000425	Not Available	3221
JGI20245J16306_1000444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3184
JGI20245J16306_1000486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3077
JGI20245J16306_1000505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3030
JGI20245J16306_1000587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2848
JGI20245J16306_1000588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2843
JGI20245J16306_1000676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella deserti	2638
JGI20245J16306_1000717	All Organisms → cellular organisms → Bacteria	2575
JGI20245J16306_1000992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2222

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20245J16306_1000220	JGI20245J16306_10002201	F003973	MIERIARWQPDQSAAVAARAVGTLALAALAVIHVVDLPGTLGPTPLVGIGYLGIISAAVLIGGVLI
JGI20245J16306_1000425	JGI20245J16306_10004253	F004557	RLRRAGRILLVVAGLTTILLASACDTAQQVPWSTYSSELQQQIDAAAAVGKCATLQALLATANATSLAHEKATGYPNDALVAYIQGAQHQAGCPA*
JGI20245J16306_1000444	JGI20245J16306_10004443	F001187	MLTGVDVDELQHALGGIVLEAAYMERVLRTAFSALIGSKYAAVIDGRLMAAALIEDCERITKYHADIPEPAKEALLAALRACHRANRERNRVIHDTWATQPGNLMVTLKGGRTSHEVTVTERTLAEVRRVADQLAAASDGLRAAMAAALGSGWALVEDQLRQELGHDINADLGNQGTEPMPRRP*
JGI20245J16306_1000486	JGI20245J16306_10004865	F038345	METIVGFVAGYLVGTREGRDGLERLRSSWHSIRTSPEVRKLAGDAITLAESVVRQRSGSA
JGI20245J16306_1000505	JGI20245J16306_10005052	F102010	VTTVRIVFALRSLRAARAPDGTDVPDWRLHQRLVVLADDAGHRAVPLWLRVFGRKELLSRVARLSRMGRPAADAEVASGLLETAVRLLRTAGTEVSTVDIEPASDDVPELRWDTVTARVGLTAATGTRPVTVSAEYGLALAAVAGAPVRVADEVMDRLAVXVPGEDMLAPFLPLADARPPGRLGHPRRFEPRNMAFTGGLDYWELAGSFSDDGQPAGQDYSCAAADQSAVLAATVPEPAGSAVLVQAIYAEDYRGRTVTFRGQLRATGIVGQAGLHLAVSGPPDGPVGRPLLDHGSSLSAPGSADWTWHEVTVAVPGEAIAIRFGISLAGRGRIELRGAELTPAPPGTPA*
JGI20245J16306_1000587	JGI20245J16306_10005871	F026355	MTETESLIAEVRLLRADVARLHAAHAPVHLRHGWMNLILKDLSTNPYTQYKVHMWGAIYWLINF
JGI20245J16306_1000588	JGI20245J16306_10005882	F064181	MNSAAIGIALVVLVVGCILGWHANRAHTAHGDIKTTHGRIAGYRKTRLKSGLWAIGFIIVALLLLAAGIHH*
JGI20245J16306_1000676	JGI20245J16306_10006761	F029162	MSTTDSLPEAEHQGRVINRTCILTSRDHPNPGSARDGLAEWAQKNNFDAVVGVRFTATAEVLTPAEITTETKWAAY
JGI20245J16306_1000717	JGI20245J16306_10007175	F026073	HCAMIGFVERNGREGDQVGYTSGKDAVQYTVIAFSSDGGATWTASTLPRTIPYPMMEALTCPTTQTCYAAGSDLIAQRIGNTYNEGSAVVAVTNDAGRSWQRVTFAVPAKVPGGMQGDSFMDIGQIQCPLPDACVAIGVSDQGSTSTPIYTNHG*
JGI20245J16306_1000992	JGI20245J16306_10009922	F020567	MTRAARPGLWLTLSHRTPGTYRGSVLVKMSDDAAGFVLVHGGELWVWAAHARMCCSGSPAWMHAATEPPAGLSGFSQVTADGGVRVWFRGVGDLVPDVLEIGLRGRRRPRVEAYWDGCLMAMV*
JGI20245J16306_1001068	JGI20245J16306_10010683	F103645	MAGPITRRRDIESLKTAASWPGADRNTTVVLATRLAAARADADGYRYFAGLAG
JGI20245J16306_1001374	JGI20245J16306_10013744	F006949	VPSDDPVPRRGAGLSGQEGIGGLPGPLRHFADRLEELNSAEVVDMDQVGRLLVELAADEEFFGPLIAQVPSGSPGNRWLIRPERGPRLVLVHRPEGVMGYTHSHRCWVGIAPVRGVETHQRWDAVRQDGDR
JGI20245J16306_1001411	JGI20245J16306_10014115	F067955	MEDHDFRVIEARAALAEAHKRVPSDLGLEELREEITRFRKYVRWLIDLADDAADTEYDEEVSQLMIYGGIYIAPADTFKLCDNCTQMLDLVRGSGSGQGNTCRAPASA
JGI20245J16306_1001413	JGI20245J16306_10014132	F001420	LMVPRRQCDGWSSATAAELAARQTAVTLLAAWYRSLDGGHVVFCANDSAPNLDYLRDAEAASGIPAGSGPEAAITRNPRQDVQHAHLHAFYAEHDRTENHESAALQGHPVLAEGYRAFSAALGTDAVQVQPDSKSLAAGLRTAARPWGGNYCSCQLGADGPGWVMPALGPSQDEVNRRLARADGLRAEPDPRLGGAINLIRPSLANTGRLHTAQQATADHRASFETFLSQRGLNAQSLAASPAAGTPRAL*
JGI20245J16306_1002071	JGI20245J16306_10020712	F026064	MVPIHVARGLADGRLQELPAEAERRRLIAAVPAGPCAVQRFALRVAGRGRRPAAARRPAVLAPRAYGPLAI*
JGI20245J16306_1002079	JGI20245J16306_10020792	F069116	MKTASSQAQWGIRVAGFVGACALILGPVVFGTAASSPNPRRDVLIXIPSDAAATMSADRTLVIDAQPELKKDESFTNETKDVEYRFRLDGSSDMVHLKISAEVEHGLVRWELIDPTGEVRASIGTTERASMSTSDIQSIKGEWLLRVTLRDATGRYKVQWEK*
JGI20245J16306_1002287	JGI20245J16306_10022872	F099692	AKLIILILTGDNQSQHDLLLDAGELFSRKEAIEQALHAETFVELMAALNAPVH*
JGI20245J16306_1002350	JGI20245J16306_10023501	F105652	ATTGPLXPYYKERGILVAVNADQPPDAVTADIQAGLSGLSLSRA*
JGI20245J16306_1002369	JGI20245J16306_10023692	F009282	MRTILHQMRPWPPAWRRPVEDRPPYAVWVIGGLIVWAFILAGFMVWDLHSTSRTVIWAVFAGWCIGVLGASIARKIYR*
JGI20245J16306_1002447	JGI20245J16306_10024471	F054408	MGKTKGINNAEFEVGSEVKIADRAFLEAFLEAGQYHNELEPEQLPYAGKIAKVKAVDFFTGGDEIYT
JGI20245J16306_1003219	JGI20245J16306_10032191	F082947	MPLEEEKIVSASTASGKIIAAGIVIAFCYWASSILVTLLVA
JGI20245J16306_1004046	JGI20245J16306_10040461	F033516	DSEVDALNTDTANCSQYFSAYGLSANQYKWLAQNRQKAFPSVCPAPSPAQVDFVVIFTHDVAFYNATMPDAVHTDVNGFSDWTPLTTVDTAQISASDADKSHHEYVWVFHTTRGAFDPAKFSARRRPLYSKAETNMLGSRGGFRTVMDALTFIEQNGTNR*
JGI20245J16306_1004433	JGI20245J16306_10044332	F094503	LHHKLAAFVLAIFAAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG*
JGI20245J16306_1004492	JGI20245J16306_10044921	F007869	VMKNERDELVAIGPVSIEYQAAMIRDELEESAGWTAVGIARVLTEDQARTLAGTAPA*
JGI20245J16306_1004649	JGI20245J16306_10046492	F000757	MGYQALLFCPEEKLARVVSQVFSELDFTIEPVHEPFAAVKKLMTQRYDAIVVDCENEQNASLLFKSARNSGSNQSSLAIALV
JGI20245J16306_1004947	JGI20245J16306_10049471	F037858	VTIVRIVLADPRTGRVPEGSAVNGEQLIVLADDAGHRVVPLWLKVIDSKLLWGLLERPAGDGVMAGVLEETAVRLLHAAGVGVTAVDIEPAGEDVPDLRPGTAAARVRLTAAAGDRHVRV
JGI20245J16306_1005154	JGI20245J16306_10051542	F003366	RWSDIQRRGDDLGQALYALREAAPDEESRARVANALASLQAVRSAMDAERAPTGADPQLAGVVRGRLASFEASLRALRAPDQRAP*
JGI20245J16306_1005318	JGI20245J16306_10053181	F039722	DGNPGLFTLETGETLPKHGWSLGVGLNKYSRMPGDITSLQVIPSVGYGINHWLSIFFQINSYDYVHVGVPSQLSLAPVNAANPQYRNTIYNSIIPSTGFPPAYVEDMPFASHNGSGVGEMDLGFKIGLLSERRGKPISLSIRNDFYLPTKTGLTDLLANQVQYGKFNYGIGLEASKTFFHGGITATANWSYRFTRDSSYTAVIGGVPQTVVLNLADQMQVGAGFIIFPTKRFQI
JGI20245J16306_1005339	JGI20245J16306_10053392	F077523	NGGPGSVPGLGALQLFQNNVITQSRLFSYIDIYFGLATLGVVALISIAITQVKVKRGSIHFHPW*
JGI20245J16306_1005806	JGI20245J16306_10058061	F019167	VTTVRIVFALQSLRAARAPDGSEVPDWRLHQRLIVLADDAGHRAVPLWLRVYGHKELLSRVVRLSQVARPAADGEVASGLLETAVRLLRTAGTAVSAVDIEPASDDVRELRWDTVTARIELATAAGTRPVTVSAEYGLALAGVAGAPVRVAGKVMDRLAVP
JGI20245J16306_1005932	JGI20245J16306_10059321	F000364	VARYLLVLDMDLLALDDELGLEPINYLVARQQREPCEIVVLSLVSNRQKKLPSMELLLGAQVGKFPVAPTPDHDVSSAAEHRMNLAVQHLKAIGCQASGVISDEELVQAVRSESSGHHYDQVILAIGRQDGSKLARALHLDPVHKLRRRWDNRLVVFSGGDA*
JGI20245J16306_1006140	JGI20245J16306_10061402	F069071	VPATVVEATAMVNVELPEPGAAIVLLLRVSVTPVGWPLAVSAIAESKPPETVVVIVDVPLLPCTTETDAGEAVMENAGDVLVGASALIRPTPFGLPQPVTRS*
JGI20245J16306_1006371	JGI20245J16306_10063711	F034117	LLGFAAPVGLQSADLFRTATLRPEVNSPASISQPTVDEALAPALAGKSVIRGLVLNYFARDGSSHVLELNASPVMAEDGSLMGTTLVLTDKTDIERIRHDQKVHQELSSELAFGLRDSLTTIAGYAQQLACSRDQELARQLADSIAREAARLDRTIGSFLGGAQAATASS*
JGI20245J16306_1006392	JGI20245J16306_10063921	F062290	MDYSIARRTPCSVCGLDTFRHKGWFLVVENRWMDRLKILSWHSALAVQKDMKSVCCRQHLKTLIAHWLIQASLRLPPANIPPLPIGSD
JGI20245J16306_1006440	JGI20245J16306_10064401	F000269	IAHLSLPQATGSQMLLQKENSKQYLYVQQATKQGFMIVDVSKPERPNLLKRTAESNQSTAGNLEMVSPDVAIAEAPEKTPATLTSNSRPTETVRVLDLSDPRNPKTLETFNKVTSLLPDGNHGLIYLTNNEGLWILRYNRPPLLEPAKKKPPCDSESQIMAMPPDCD*
JGI20245J16306_1006528	JGI20245J16306_10065281	F004702	MNGRSIRNALLVFVLASAALAVGCGGGTEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIDGNKIVARGDFGPMLPSPLIFTVNKDGTIDGPRDTMIPRLEK
JGI20245J16306_1006675	JGI20245J16306_10066752	F007126	VAEVNISDIEALADFRSHLAEFNKDLSESFKTMRTHWRELGEVWRDDMYRRFGEALEEVTPGVDSYL
JGI20245J16306_1007115	JGI20245J16306_10071152	F014304	VRIQPSVGRHRRARRPPSEGPSDQALNRLAGWYAIALRLGGAVLFTAIAVLAATKQISAWWLGATLVMLCLWSAFFTWRIRRSGLMRAVILADSAVISALALAQQHLVPAGLISDDTTWMLPLACTSVYILQVALRPWLGLPAA
JGI20245J16306_1007132	JGI20245J16306_10071322	F006946	PNVAPPSLGPGEYEDPTLWHLASTPGLPPDVVRGLVALAKNWRQGDGDPDEQSRRRASGL
JGI20245J16306_1007611	JGI20245J16306_10076111	F104002	SQLARLRWEQAKHAAASGASTWRDHPNAKVRLVRRANSASD*
JGI20245J16306_1008048	JGI20245J16306_10080481	F055079	RGRGTFRWWRRELERPSPDEASCGKARKALSYNRCGAGKWAAAGRESEAVVVPVELQDSTTCGEGRAAASFAREREASGW*
JGI20245J16306_1008360	JGI20245J16306_10083601	F024383	GWLGGIVANACRAQRRRAPLTLLGDWPENLHPASADSLPSAEDLDRADALGRAVAGLPPGQRQAVTLFYYADQPESRIAGTTGAAKASLHKARRRLREYITAYRPDLIPAVSRRTPMTAVRIAHSDPWPGRQPGGLVVLADDAGHRALPVRLPGHGVFWRLLARPGGTELPVDDAGEMTGQLLH
JGI20245J16306_1009390	JGI20245J16306_10093901	F042994	AGMDFYDSTQPELIPAGTHACLYYDGEFAATPEQARRFAAVRWITVLGNYADCGIADFEAGNAVFSKPGALRSFVEGRHKMGVRARVYCDRANLPTVRSELDGLTYLVWIGTLDGEKLSANYTPGLWGVQFAGGLTADYDTSVLYGVW*
JGI20245J16306_1009424	JGI20245J16306_10094242	F000328	KLWVWAAHPRVCCWGTPAFMHAATAPPQGLSGFSPVPVAGLEVWFRAPGGRLPDFLEIELRGRRHPRVEAYWDGCSYAL*
JGI20245J16306_1009496	JGI20245J16306_10094961	F025516	MAEGEQPNVYQPEPQSNIGKWILIVLAIAYVGASGYALYDQHVKLDKITQDQAASQKDIGDLTKRMQSAEADSETLAQQIGMTKKELATRAGELQRAQQAASARISAQAEEEKKDVNAVAGEV
JGI20245J16306_1010100	JGI20245J16306_10101001	F017565	MARSGQGAGEPPQAVVAEGSGSPAPRPRPSGLDTKMTWGLVGLGLVGHILRSPRFYLAVGVTAIALGSLRQIGQQDTASMTARLAAWDRRQIKRLERKAQRQARAVKGSAQMARSGPPRGLAGSGHET*
JGI20245J16306_1010126	JGI20245J16306_10101261	F057773	ADRDIETGDQGLRAVAAILEFAPLDLARLHRQSRCDALQRLNAGHLVDRDCAVALVGAGCGLVNLTDIGAFGVKGRIWFWCQPVTKAVRFKVGLFFKKRPTERCEMFETRPRRIASSAISRWLQWLIGRSLSDGFSQVIAITAQICSGVYVAGAPERGASASRSDTDW
JGI20245J16306_1010358	JGI20245J16306_10103582	F007273	EMIRLIIAIAVGAVLAVGGVIILVGVAGNAANGSPSNSSIYQYGTR*