Metagenome Family F103645

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103645
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	50 residues
Representative Sequence	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFS
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.06 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	80.20 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.178 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (23.762 % of family members)
Environment Ontology (ENVO)	Unclassified (22.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.65% β-sheet: 0.00% Coil/Unstructured: 49.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF07690	MFS_1	17.82
PF01638	HxlR	6.93
PF00196	GerE	2.97
PF01061	ABC2_membrane	1.98
PF00753	Lactamase_B	1.98
PF07508	Recombinase	0.99
PF00005	ABC_tran	0.99
PF01047	MarR	0.99
PF10604	Polyketide_cyc2	0.99
PF03176	MMPL	0.99
PF00070	Pyr_redox	0.99
PF11239	DUF3040	0.99
PF13602	ADH_zinc_N_2	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	6.93
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.99
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.99
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.18 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	77.23 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	73.27 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	63.37 %
Unclassified	root	N/A	17.82 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	39.60 %
Unclassified	root	N/A	17.82 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.99 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	39.60 %
Unclassified	root	N/A	17.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	3.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Rothia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia	39.60 %
Unclassified	root	N/A	17.82 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.99 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.99 %

Name	Rank	Taxonomy	Distribution
Rothia dentocariosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	39.60 %
Unclassified	root	N/A	17.82 %
Nocardia vaccinii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia vaccinii	3.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.99 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001634\|JGI20245J16306_1001068	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2147	Open in IMG/M
3300003505\|JGIcombinedJ51221_10005561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3804	Open in IMG/M
3300005178\|Ga0066688_11010626	Not Available	506	Open in IMG/M
3300005518\|Ga0070699_100869381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	825	Open in IMG/M
3300005602\|Ga0070762_10562456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	753	Open in IMG/M
3300005610\|Ga0070763_10539940	Not Available	671	Open in IMG/M
3300005712\|Ga0070764_10335193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	881	Open in IMG/M
3300005841\|Ga0068863_102742377	Not Available	501	Open in IMG/M
3300005921\|Ga0070766_10373502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	929	Open in IMG/M
3300006028\|Ga0070717_11287899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	664	Open in IMG/M
3300006059\|Ga0075017_100441658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	981	Open in IMG/M
3300006162\|Ga0075030_101172080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300006175\|Ga0070712_101034431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	711	Open in IMG/M
3300006176\|Ga0070765_101061710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	765	Open in IMG/M
3300009038\|Ga0099829_10813141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	776	Open in IMG/M
3300009524\|Ga0116225_1172261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	983	Open in IMG/M
3300009525\|Ga0116220_10285673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	724	Open in IMG/M
3300010379\|Ga0136449_100727016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1658	Open in IMG/M
3300010379\|Ga0136449_102325526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	776	Open in IMG/M
3300011270\|Ga0137391_10058853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3287	Open in IMG/M
3300011270\|Ga0137391_11223517	Not Available	598	Open in IMG/M
3300011271\|Ga0137393_10522237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	1018	Open in IMG/M
3300012096\|Ga0137389_11466088	Not Available	578	Open in IMG/M
3300012201\|Ga0137365_10142703	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1800	Open in IMG/M
3300012207\|Ga0137381_10224183	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1631	Open in IMG/M
3300012207\|Ga0137381_11030998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	709	Open in IMG/M
3300012209\|Ga0137379_10087839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2992	Open in IMG/M
3300012210\|Ga0137378_10093754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2749	Open in IMG/M
3300012350\|Ga0137372_10945043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	607	Open in IMG/M
3300012351\|Ga0137386_10472197	Not Available	904	Open in IMG/M
3300012356\|Ga0137371_10532375	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300014489\|Ga0182018_10453628	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300014495\|Ga0182015_10310948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1029	Open in IMG/M
3300017821\|Ga0187812_1166263	Not Available	708	Open in IMG/M
3300017932\|Ga0187814_10080039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	1200	Open in IMG/M
3300018001\|Ga0187815_10285844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300020579\|Ga0210407_10766993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	745	Open in IMG/M
3300020581\|Ga0210399_10356820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	1220	Open in IMG/M
3300020581\|Ga0210399_10548418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	959	Open in IMG/M
3300021088\|Ga0210404_10534694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	664	Open in IMG/M
3300021170\|Ga0210400_10891269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	727	Open in IMG/M
3300021171\|Ga0210405_10584763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	870	Open in IMG/M
3300021178\|Ga0210408_10114052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2128	Open in IMG/M
3300021401\|Ga0210393_10526877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	965	Open in IMG/M
3300021401\|Ga0210393_10623693	Not Available	880	Open in IMG/M
3300021403\|Ga0210397_11006694	Not Available	647	Open in IMG/M
3300021406\|Ga0210386_10009266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7769	Open in IMG/M
3300021406\|Ga0210386_10413921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1162	Open in IMG/M
3300021420\|Ga0210394_10445253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	1140	Open in IMG/M
3300021433\|Ga0210391_10376322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	1114	Open in IMG/M
3300021477\|Ga0210398_10739400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	794	Open in IMG/M
3300021559\|Ga0210409_10179082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1936	Open in IMG/M
3300025464\|Ga0208076_1097659	Not Available	504	Open in IMG/M
3300025928\|Ga0207700_11039843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	733	Open in IMG/M
3300025929\|Ga0207664_11041740	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300026374\|Ga0257146_1075979	Not Available	547	Open in IMG/M
3300027080\|Ga0208237_1025656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	889	Open in IMG/M
3300027590\|Ga0209116_1064420	Not Available	797	Open in IMG/M
3300027641\|Ga0208827_1046766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1465	Open in IMG/M
3300027829\|Ga0209773_10149863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	971	Open in IMG/M
3300027855\|Ga0209693_10496985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	584	Open in IMG/M
3300027889\|Ga0209380_10047500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2436	Open in IMG/M
3300027895\|Ga0209624_10505290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	805	Open in IMG/M
3300028762\|Ga0302202_10449508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	590	Open in IMG/M
3300028789\|Ga0302232_10449508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	633	Open in IMG/M
3300028877\|Ga0302235_10008236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6573	Open in IMG/M
3300028877\|Ga0302235_10026212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia vaccinii	3066	Open in IMG/M
3300028879\|Ga0302229_10024908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia vaccinii	3240	Open in IMG/M
3300028879\|Ga0302229_10524139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	522	Open in IMG/M
3300028906\|Ga0308309_10568187	Not Available	983	Open in IMG/M
3300028906\|Ga0308309_11051794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	704	Open in IMG/M
3300028906\|Ga0308309_11710223	Not Available	533	Open in IMG/M
3300029943\|Ga0311340_10102881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia vaccinii	3136	Open in IMG/M
3300029943\|Ga0311340_11188891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	614	Open in IMG/M
3300029951\|Ga0311371_10967325	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300029953\|Ga0311343_10680368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	864	Open in IMG/M
3300029997\|Ga0302302_1342943	Not Available	531	Open in IMG/M
3300030007\|Ga0311338_10133033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3003	Open in IMG/M
3300030042\|Ga0302300_1092970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	912	Open in IMG/M
3300030399\|Ga0311353_10059101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3847	Open in IMG/M
3300030490\|Ga0302184_10019495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3684	Open in IMG/M
3300030490\|Ga0302184_10366408	Not Available	566	Open in IMG/M
3300030503\|Ga0311370_10156182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3134	Open in IMG/M
3300030503\|Ga0311370_11018792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	921	Open in IMG/M
3300030617\|Ga0311356_10101546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3014	Open in IMG/M
3300030617\|Ga0311356_11025116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	769	Open in IMG/M
3300030618\|Ga0311354_10368088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1461	Open in IMG/M
3300030739\|Ga0302311_10333986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300031234\|Ga0302325_12183870	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300031236\|Ga0302324_100209921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia vaccinii	3094	Open in IMG/M
3300031236\|Ga0302324_102415839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	644	Open in IMG/M
3300031525\|Ga0302326_10394946	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2148	Open in IMG/M
3300031543\|Ga0318516_10176628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1230	Open in IMG/M
3300031708\|Ga0310686_104830948	Not Available	568	Open in IMG/M
3300031708\|Ga0310686_116729899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	758	Open in IMG/M
3300031708\|Ga0310686_118927815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	538	Open in IMG/M
3300031770\|Ga0318521_10901158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300032064\|Ga0318510_10320729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	649	Open in IMG/M
3300032089\|Ga0318525_10570695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	578	Open in IMG/M
3300032896\|Ga0335075_10024007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8922	Open in IMG/M
3300033828\|Ga0334850_075707	Not Available	640	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.07%
Aquatic	Environmental → Aquatic	5.94%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.34%
Peat	Environmental → Terrestrial → Peat	26.73%
Freshwater	Environmental → Aquatic → Freshwater	3.96%
Sediment	Environmental → Aquatic → Sediment	1.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	26.73%
Loam	Environmental → Terrestrial → Soil → Loam	19.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	26.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	23.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.98%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001634	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033828	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20245J16306_10010683	3300001634	Forest Soil	MAGPITRRRDIESLKTAASWPGADRNTTVVLATRLAAARADADGYRYFAGLAG
JGIcombinedJ51221_100055613	3300003505	Forest Soil	MAGPITRRRDIESLKTAASWPGADRNTTVVLATRLAAARADADGYRYFAGLAGAQPGET
Ga0066688_110106261	3300005178	Soil	MTSPITRQRDIESLKVAAGWPGADQATLVVLAARLAAAGADADGYRFFQQQADAQ
Ga0070699_1008693813	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTITRHRDIESLKTAARWPGADRNTTVILAARLAAARA
Ga0070762_105624562	3300005602	Soil	MTEPITRHRDIESLQTAARWPGADRNTTVVLAIRLAAARADAEGYRYFSE
Ga0070763_105399402	3300005610	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAVRLAAARADAEGYRYFSE
Ga0070764_103351932	3300005712	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARAD
Ga0068863_1027423771	3300005841	Switchgrass Rhizosphere	MTGPITHDRSIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSELAGARPGE
Ga0070766_103735022	3300005921	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFS
Ga0070717_112878992	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTGPITRRRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFSELA
Ga0075017_1004416581	3300006059	Watersheds	MIAPHRGIESLKVAARWPGADRATVVTLATRLASVRADAEGYAYFQEQADAQP
Ga0075030_1011720801	3300006162	Watersheds	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAATRADAEGYRYFSELAAELAGAEIGPVE*
Ga0070712_1010344312	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTGPITHDRSIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSE
Ga0070765_1010617101	3300006176	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAARLAAARADGEG
Ga0099829_108131412	3300009038	Vadose Zone Soil	MTGPITRHRGIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYF
Ga0116225_11722611	3300009524	Peatlands Soil	MTGSITRPRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYF
Ga0116220_102856732	3300009525	Peatlands Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARA
Ga0136449_1007270162	3300010379	Peatlands Soil	MTNMTGPITRNRAIESLETAARWPGADRATTVILAT
Ga0136449_1023255262	3300010379	Peatlands Soil	MTGPITHHRDIESLKTAARWPGADRNTTVILATKLAAARADGEGYRYFSELAGARPG
Ga0137391_100588531	3300011270	Vadose Zone Soil	MRGNKARRDLESLKTAARWPGADQATVVTFATRLAAAGADADGYAYFQQEADAHPDQVLLLAL
Ga0137391_112235172	3300011270	Vadose Zone Soil	MTGPITRHRGIESLKTAARWPGADRATTVILAIRLAAARA
Ga0137393_105222371	3300011271	Vadose Zone Soil	MTGPITRHRGIESLKTAARWPGADQNTTVNLDTRPGSVRADAEVYAAREEP
Ga0137389_114660883	3300012096	Vadose Zone Soil	MTGPITRHRDIESLKAAARWPDADRNTTVILAARLAAARADAEGYRYFSELADARPGEALPLALA
Ga0137365_101427031	3300012201	Vadose Zone Soil	MTAKDHLMPSPITRQRDIESLKVAARWPGADQATLVVLAARLAAASAD
Ga0137381_102241831	3300012207	Vadose Zone Soil	MTAKDHLMPSPITRQRDIESLKVAAGWPGADQATLVVLAARLAAAGADADGYRFFQQQAD
Ga0137381_110309982	3300012207	Vadose Zone Soil	MTGPITRHRDIESLKTAARWPGADRATTVTLATRL
Ga0137379_100878391	3300012209	Vadose Zone Soil	MTGPIAGHRGIESLKTAARWPGADRATTVILATRLAA
Ga0137378_100937544	3300012210	Vadose Zone Soil	MTGRITRRADIEALKVAAGWPGADRTTVVTLATRLAAV
Ga0137372_109450432	3300012350	Vadose Zone Soil	MTGPIIRHRDIESLKTAARWPGADRATTVILATRLAAARADAEGY
Ga0137386_104721972	3300012351	Vadose Zone Soil	MTAKDHLMPSPITRQRDIESLKVAARWPGADQATLVVLAARLAAASADADGYRF
Ga0137371_105323751	3300012356	Vadose Zone Soil	MTGPITANRDVEALKIAARWPGADRATVVVLATTLAVAGADADGYAYFQQEADAHP
Ga0182018_104536281	3300014489	Palsa	NRGLPCLTDTEGITAMTGPITRHRDIESLKTAARWPGADRNTTVILAARLAAARADGEGYR*
Ga0182015_103109481	3300014495	Palsa	TEGITAMTGPITRHRDIESLKTAARWPGADRNTTVILAARLAAARADGEGYR*
Ga0187812_11662632	3300017821	Freshwater Sediment	MTGPITRHRDIESLKKAARWPGADRNTTVVLAVRLAAARADAEGYRYFSELADAQPD
Ga0187814_100800393	3300017932	Freshwater Sediment	MTGPITRHRDIESLKKAARWPGADRNTTVVLAVRLAAARADAEGYRYFSELADAQPDE
Ga0187815_102858441	3300018001	Freshwater Sediment	MTGPITRHRDIESLKTAARWPGADRNTAVILAVRLAAARADAEGYRYFSELADA
Ga0210407_107669932	3300020579	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAA
Ga0210399_103568202	3300020581	Soil	MTGSITRDRDIESLKTAARWPAADRNTTVILATRLAAARADGEGYRYFAELAGARQGEA
Ga0210399_105484181	3300020581	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFCELAGAQPGQAL
Ga0210404_105346941	3300021088	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSELAGAQPGEA
Ga0210400_108912691	3300021170	Soil	MTGPITRPRDIESLKTAARWPGADRNTTVILAVRLAAARADA
Ga0210405_105847632	3300021171	Soil	MTGSIAHDRSIESLKSAARWPGADRTTTVTLATRLAAARADADGYRY
Ga0210408_101140521	3300021178	Soil	MTGTITRHRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFSELAGAQP
Ga0210393_105268771	3300021401	Soil	MTGPITRDRDIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFS
Ga0210393_106236931	3300021401	Soil	MTGSITRHRDIESLKTAARWPGADRNTTVILATRLAAARADAEGY
Ga0210397_110066942	3300021403	Soil	MTGPITHDRSIESLKAAARWPGADRNTTVILAVRLAAARADAEGYRYFSELADAQPGEA
Ga0210386_100092668	3300021406	Soil	MTGSITHDRSIESLKSAARWPGADRTTTVTLATRLAAARADA
Ga0210386_104139211	3300021406	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSELAGAQPGEAL
Ga0210394_104452531	3300021420	Soil	MTGSITRDRDIESLKTAARWPGADRNTTVILATRLAAARADGEG
Ga0210391_103763221	3300021433	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAIRLAAARAD
Ga0210398_107394002	3300021477	Soil	MTGSITRHRDIESLKTAARWPGADRNTTVILAARLAAV
Ga0210409_101790824	3300021559	Soil	MTGTITRHRDIESLKTAARWPGADRNTTVILAVRLAAARADAEGYRYFC
Ga0208076_10976592	3300025464	Arctic Peat Soil	MTSKDRLMTSPITRPRDIESLQVAASWPGADQATLVVLAARLAAAGAD
Ga0207700_110398432	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTGPITRRRDIESLKTAARWPGADRNTTVILAVRLAAARADAEGYRYFSELADAQPGQA
Ga0207664_110417402	3300025929	Agricultural Soil	MTSPITRQRDIESLKQAATWPGADRATLVVLAARLAATSGDADGYRFFQQLADAQP
Ga0257146_10759791	3300026374	Soil	MTGPITRPRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFSELADAQ
Ga0208237_10256562	3300027080	Forest Soil	MAGPITRRRDIESLKTAASWPGADRNTTVVLATRLAAARADADG
Ga0209116_10644201	3300027590	Forest Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAIRLAAARADAEGYRYFSELADAQPGETLPLALA
Ga0208827_10467662	3300027641	Peatlands Soil	MTGSITRPRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFSELADAQTSET
Ga0209773_101498631	3300027829	Bog Forest Soil	MAGPITRRRDIESLKTAASWPGADRNTAVVLATRLAAARADA
Ga0209693_104969852	3300027855	Soil	MIKPITRQRDIESLKIAARWPDADKNTIVTLASRLAADSADAEGYRYFADLSAAQPDAALPLS
Ga0209380_100475001	3300027889	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAVRLAAARAD
Ga0209624_105052901	3300027895	Forest Soil	MTGPITRHRDIESLKTAACWPGADRNTTVILATRLAA
Ga0302202_104495082	3300028762	Bog	MTGSITRDRGIESLKTAARWPGADRATTITLATRLAAARADGEGYRYFSELADAQPGEA
Ga0302232_104495081	3300028789	Palsa	MTGSITRDRGIESLKTAAGWPGADRATTITLATRLAAARADGEGYRYFAELAGTQP
Ga0302235_1000823611	3300028877	Palsa	MTGSITRDRGIESLKTAARWPGADRATTVILATRLAAAGADGEGYRYFAELA
Ga0302235_100262123	3300028877	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADGEGYRYFAELA
Ga0302229_100249083	3300028879	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADGEGY
Ga0302229_105241392	3300028879	Palsa	MTGSITRDRGIESLKTAARWPGADRATTSTLATRLAA
Ga0308309_105681873	3300028906	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAVRLAAARADAEGYRYFSELADA
Ga0308309_110517942	3300028906	Soil	MTGPITPRRGIESLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSELADAQPGQPLPLTLAG
Ga0308309_117102231	3300028906	Soil	MTGPITRHRDIESLKTAARWPGADRNTTVILAARLAAARADGEGYRY
Ga0311340_101028811	3300029943	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADGEG
Ga0311340_111888912	3300029943	Palsa	MAGPITHDRSIESLKTAARWPGADRNTTVILAARLAAA
Ga0311371_109673251	3300029951	Palsa	MTARITRQRDIESLKTAGRWSNADRNTLVTLAGRLAAEGADAEGQQYFAELAGARPGEALPLSL
Ga0311343_106803681	3300029953	Bog	MTGSITRDRGIESLKTAARWPGADRATTITLATRLAAARAD
Ga0302302_13429431	3300029997	Palsa	MTGPITRHRGIESLKTAARWPGADRNTAVILATRLAAARADAEG
Ga0311338_101330331	3300030007	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADGEGYRYF
Ga0302300_10929703	3300030042	Palsa	MTGSITRDRGIESLKTAARWPGADRATTITLATRL
Ga0311353_100591011	3300030399	Palsa	MTGSITRDRGIESLKTAARWPGADRATTVILATRLAAAGADGEGYRY
Ga0302184_100194951	3300030490	Palsa	MTGSITRDRGIESLKTAARWPGADRATTVILATRLAAAGADGEGYRYFAE
Ga0302184_103664081	3300030490	Palsa	MTGPITRHRDIESLKTAARWPGADRATTVTLATRLAAARADAEGYRYFCELADDRPGE
Ga0311370_101561827	3300030503	Palsa	MTGSITRDRGIESLKTAARWPGADRATTIILATRLAAAGAD
Ga0311370_110187922	3300030503	Palsa	MTGRITRQRDIESLKRAARWPGADKTTLVTLATRLAAARADSEGYRYFSDLCDAQPDAA
Ga0311356_101015463	3300030617	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADGEGYRYFA
Ga0311356_110251161	3300030617	Palsa	MTGSITRDRGIESLKTAAGWPGADRATTITLATRL
Ga0311354_103680881	3300030618	Palsa	MTGSITRDRGIESLKTAARWPGADRATTVILATRLAAAGADGEGYRNIAELAG
Ga0302311_103339861	3300030739	Palsa	MTGSITRDRGIESLKTAARWPGADRATTVILATRLAAAGADG
Ga0302325_121838702	3300031234	Palsa	MTGPITRNRDIESLKVAARWPGADQATVVILATRLAAARADADGYSWFQHEADTHPDRAL
Ga0302324_1002099213	3300031236	Palsa	MTGPITRHCDIESLKTAARWPGADRATTVILATRLAAAGADG
Ga0302324_1024158391	3300031236	Palsa	MTGSITRDRGIESLKTAAGWPGADRATTITLATRLA
Ga0302326_103949461	3300031525	Palsa	MAGPITHDRSIESLKTAARWPGADRNTTVILAARLAAADADGEGYRYFS
Ga0318516_101766284	3300031543	Soil	MTGPITRRRDIDSLKIAASWPGADRATIVTLATRLAAARR
Ga0310686_1048309481	3300031708	Soil	MTGPITRRRDIESLKTAARWPGADRNTTVILAARLAAARADAEGYRYFCELAGAR
Ga0310686_1167298992	3300031708	Soil	VTGPIARHRDVESLRAAARWAGAGRATAVVLAIRLAAAR
Ga0310686_1189278151	3300031708	Soil	MTARITRRRDVESLKIAARWPGADKNTMVTLASRLAADRADAEGHRFFSALSDAQPDAATPLAL
Ga0318521_109011581	3300031770	Soil	MGSITRHRDIESLQTAAAWPGADRATVVTLAARLVAAGQDAEGYRYFQR
Ga0318510_103207292	3300032064	Soil	MDSITRHRDIESLQTAAAWPGADRATVVTLAARLVAAGQD
Ga0318525_105706952	3300032089	Soil	MTGPITRRRDIDSLKIAASWPGADRATIVTLATRLAAARRDAEGFRYFTEFAGTHPGAALPLALAGFF
Ga0335075_100240072	3300032896	Soil	MTRPISRQRDIESLKIAARWPDADKNTIVTLASRLAVAGADTEGYRYFCELSDA
Ga0334850_075707_437_640	3300033828	Soil	MTALTTHDRGIQSLKTAARWPGADRNTTVILATRLAAARADAEGYRYFSELADAQPGAALPLTLAGFF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103645

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences