Metagenome / Metatranscriptome Family F094503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094503
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	56 residues
Representative Sequence	SLAVPLHHKLVAAALAVPAAGCAIIAFGVVAYLLDDGDLKAVLAWVRRAMGRLRS
Number of Associated Samples	95
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	91.51 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.981 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.189 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.509 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.63% β-sheet: 0.00% Coil/Unstructured: 43.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00903	Glyoxalase	11.32
PF13424	TPR_12	3.77
PF12680	SnoaL_2	1.89
PF02463	SMC_N	1.89
PF02881	SRP54_N	1.89
PF13404	HTH_AsnC-type	1.89
PF10935	DUF2637	1.89
PF01844	HNH	0.94
PF01370	Epimerase	0.94
PF02467	Whib	0.94
PF01266	DAO	0.94
PF13374	TPR_10	0.94
PF08241	Methyltransf_11	0.94
PF00933	Glyco_hydro_3	0.94
PF13649	Methyltransf_25	0.94
PF13463	HTH_27	0.94
PF13006	Nterm_IS4	0.94
PF13578	Methyltransf_24	0.94
PF13412	HTH_24	0.94
PF00196	GerE	0.94
PF04255	DUF433	0.94
PF13191	AAA_16	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.94
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
All Organisms	root	All Organisms	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
cellular organisms	root	All Organisms → cellular organisms	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	12.26 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.89 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.94 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.72 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.89 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.94 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples	0.94 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.72 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	1.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.89 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.94 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.94 %
Saccharothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix	0.94 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.98 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.72 %
Streptosporangium pseudovulgare	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium pseudovulgare	1.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.89 %
Saccharothrix algeriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → Saccharothrix algeriensis	0.94 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.94 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	0.94 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001634\|JGI20245J16306_1004433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	796	Open in IMG/M
3300003505\|JGIcombinedJ51221_10051809	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300004091\|Ga0062387_100645658	Not Available	766	Open in IMG/M
3300004471\|Ga0068965_1160973	Not Available	528	Open in IMG/M
3300005434\|Ga0070709_10687390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	795	Open in IMG/M
3300005436\|Ga0070713_101204230	Not Available	733	Open in IMG/M
3300005547\|Ga0070693_100896425	Not Available	664	Open in IMG/M
3300005610\|Ga0070763_10597961	Not Available	639	Open in IMG/M
3300005615\|Ga0070702_100600241	Not Available	825	Open in IMG/M
3300005950\|Ga0066787_10003346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2315	Open in IMG/M
3300006052\|Ga0075029_100572853	Not Available	752	Open in IMG/M
3300009520\|Ga0116214_1202927	Not Available	746	Open in IMG/M
3300009523\|Ga0116221_1207339	Not Available	849	Open in IMG/M
3300009525\|Ga0116220_10551132	Not Available	527	Open in IMG/M
3300009698\|Ga0116216_10235082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	1121	Open in IMG/M
3300010341\|Ga0074045_10219789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1266	Open in IMG/M
3300010373\|Ga0134128_13094508	Not Available	511	Open in IMG/M
3300010379\|Ga0136449_100230209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3472	Open in IMG/M
3300010379\|Ga0136449_100479638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2169	Open in IMG/M
3300010379\|Ga0136449_102524147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	736	Open in IMG/M
3300010396\|Ga0134126_10768839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium pseudovulgare	1090	Open in IMG/M
3300010876\|Ga0126361_10865599	Not Available	1336	Open in IMG/M
3300011271\|Ga0137393_11249419	Not Available	630	Open in IMG/M
3300012209\|Ga0137379_11177334	Not Available	673	Open in IMG/M
3300012210\|Ga0137378_11582268	Not Available	565	Open in IMG/M
3300012211\|Ga0137377_11862829	Not Available	520	Open in IMG/M
3300012984\|Ga0164309_11885729	Not Available	512	Open in IMG/M
3300013104\|Ga0157370_10954097	Not Available	777	Open in IMG/M
3300016270\|Ga0182036_11042500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	675	Open in IMG/M
3300016341\|Ga0182035_10647521	Not Available	917	Open in IMG/M
3300016404\|Ga0182037_10739978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	844	Open in IMG/M
3300016445\|Ga0182038_10048238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2824	Open in IMG/M
3300017937\|Ga0187809_10275167	Not Available	615	Open in IMG/M
3300017939\|Ga0187775_10334431	Not Available	607	Open in IMG/M
3300017943\|Ga0187819_10684495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	579	Open in IMG/M
3300017946\|Ga0187879_10286702	Not Available	915	Open in IMG/M
3300017955\|Ga0187817_10132895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1578	Open in IMG/M
3300017959\|Ga0187779_10456369	Not Available	840	Open in IMG/M
3300017959\|Ga0187779_11321959	Not Available	511	Open in IMG/M
3300017974\|Ga0187777_11411819	Not Available	514	Open in IMG/M
3300018001\|Ga0187815_10097175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1241	Open in IMG/M
3300018046\|Ga0187851_10056259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2548	Open in IMG/M
3300018062\|Ga0187784_11666274	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300020579\|Ga0210407_10581759	Not Available	873	Open in IMG/M
3300021181\|Ga0210388_10298935	Not Available	1414	Open in IMG/M
3300021407\|Ga0210383_10722350	Not Available	856	Open in IMG/M
3300021474\|Ga0210390_10698709	Not Available	845	Open in IMG/M
3300021560\|Ga0126371_10143399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2443	Open in IMG/M
3300022530\|Ga0242658_1063507	Not Available	812	Open in IMG/M
3300024225\|Ga0224572_1089603	Not Available	568	Open in IMG/M
3300025916\|Ga0207663_10687443	Not Available	809	Open in IMG/M
3300025928\|Ga0207700_10559159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharothrix → Saccharothrix algeriensis	1016	Open in IMG/M
3300026075\|Ga0207708_10462264	Not Available	1059	Open in IMG/M
3300026095\|Ga0207676_12029427	Not Available	574	Open in IMG/M
3300027089\|Ga0207943_114516	Not Available	505	Open in IMG/M
3300027307\|Ga0209327_1010213	Not Available	1163	Open in IMG/M
3300027545\|Ga0209008_1102748	Not Available	638	Open in IMG/M
3300027625\|Ga0208044_1142404	Not Available	670	Open in IMG/M
3300027854\|Ga0209517_10584404	Not Available	594	Open in IMG/M
3300027855\|Ga0209693_10276838	Not Available	820	Open in IMG/M
3300028381\|Ga0268264_12559202	Not Available	515	Open in IMG/M
3300029943\|Ga0311340_10020806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8199	Open in IMG/M
3300030007\|Ga0311338_10021039	All Organisms → cellular organisms → Bacteria	9430	Open in IMG/M
3300030007\|Ga0311338_10142124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2876	Open in IMG/M
3300030399\|Ga0311353_10542040	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300030520\|Ga0311372_10854710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1232	Open in IMG/M
3300030520\|Ga0311372_12458992	Not Available	587	Open in IMG/M
3300030740\|Ga0265460_11889981	Not Available	616	Open in IMG/M
3300031234\|Ga0302325_12422964	Not Available	629	Open in IMG/M
3300031525\|Ga0302326_13451232	Not Available	526	Open in IMG/M
3300031543\|Ga0318516_10006979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5256	Open in IMG/M
3300031544\|Ga0318534_10014078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	4100	Open in IMG/M
3300031544\|Ga0318534_10184361	Not Available	1206	Open in IMG/M
3300031546\|Ga0318538_10710021	Not Available	545	Open in IMG/M
3300031549\|Ga0318571_10030991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1486	Open in IMG/M
3300031564\|Ga0318573_10132610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1298	Open in IMG/M
3300031640\|Ga0318555_10271247	Not Available	917	Open in IMG/M
3300031640\|Ga0318555_10593040	Not Available	600	Open in IMG/M
3300031708\|Ga0310686_108935754	Not Available	661	Open in IMG/M
3300031736\|Ga0318501_10592052	Not Available	608	Open in IMG/M
3300031747\|Ga0318502_10138009	Not Available	1382	Open in IMG/M
3300031764\|Ga0318535_10289326	Not Available	733	Open in IMG/M
3300031770\|Ga0318521_10501894	Not Available	729	Open in IMG/M
3300031770\|Ga0318521_10753033	Not Available	593	Open in IMG/M
3300031799\|Ga0318565_10402331	Not Available	664	Open in IMG/M
3300031805\|Ga0318497_10429563	Not Available	739	Open in IMG/M
3300031831\|Ga0318564_10282591	Not Available	734	Open in IMG/M
3300031846\|Ga0318512_10609726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300031880\|Ga0318544_10033416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1798	Open in IMG/M
3300031896\|Ga0318551_10890821	Not Available	519	Open in IMG/M
3300032008\|Ga0318562_10511532	Not Available	696	Open in IMG/M
3300032008\|Ga0318562_10839956	Not Available	525	Open in IMG/M
3300032059\|Ga0318533_10296892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1172	Open in IMG/M
3300032064\|Ga0318510_10059895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1370	Open in IMG/M
3300032090\|Ga0318518_10201299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1019	Open in IMG/M
3300032094\|Ga0318540_10479060	Not Available	601	Open in IMG/M
3300032094\|Ga0318540_10553601	Not Available	554	Open in IMG/M
3300032205\|Ga0307472_101449663	Not Available	668	Open in IMG/M
3300032515\|Ga0348332_14017574	Not Available	586	Open in IMG/M
3300032770\|Ga0335085_10822745	Not Available	1020	Open in IMG/M
3300032770\|Ga0335085_12601012	Not Available	500	Open in IMG/M
3300032782\|Ga0335082_10475416	Not Available	1112	Open in IMG/M
3300033134\|Ga0335073_10300115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium pseudovulgare	1929	Open in IMG/M
3300033158\|Ga0335077_10877305	Not Available	906	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.23%
Host-Associated	Host-Associated	3.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.68%
Aquatic	Environmental → Aquatic	7.55%
Plants	Host-Associated → Plants	3.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.25%
Peat	Environmental → Terrestrial → Peat	8.49%
Freshwater	Environmental → Aquatic → Freshwater	6.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Sediment	Environmental → Aquatic → Sediment	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.77%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.32%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.19%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.43%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.72%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001634	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004471	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 57 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027089	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF015 (SPAdes)	Environmental	Open in IMG/M
3300027307	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20245J16306_10044332	3300001634	Forest Soil	LHHKLAAFVLAIFAAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG*
JGIcombinedJ51221_100518093	3300003505	Forest Soil	GSAVGAGISLAVPLHHKLAAFVLAIFAAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG*
Ga0062387_1006456581	3300004091	Bog Forest Soil	AVPVHHKLAAFALALPAAGCAIIAFGVVAYLLDNGDLRAVLAWARRVARLRS*
Ga0068965_11609731	3300004471	Peatlands Soil	GAAVGLAVSLAVPLHHKLVAAALAVPAACFAIIAFGVVAYFLDAGDLRAVLAWVRRVVRPRS*
Ga0066388_1030832891	3300005332	Tropical Forest Soil	LPVTHKVVAGGVAVLAAGCAVIAFGVVAYLLDDGDLQPILARVRRVVRPRS*
Ga0070709_106873901	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	HHKLVAVALAVPAATFAILAFGVVAYFLDDGDLRIILAWIRRAASRVRIRR*
Ga0070713_1012042301	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GVAISLAVPLHHKLMAAVLAVPAAGGAIIAFGVVAYILDDGDLTAVLAWARRAMRMRS*
Ga0070693_1008964252	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	AVPLHHKLVAVALAVVAAGCAILAFGVVAYILDDGDLKAVLASVRGAVRLRT*
Ga0070763_105979612	3300005610	Soil	ACAAGTVVGVGVSLAVPLHHKLEAIALAVPAVACAILAFGVVAYLLDDGDLRAVLTWARRVARRR*
Ga0070702_1006002411	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AGSAVGVGISLAVPLHHKLVAAALALPAAGGAIIAFGVVAYILDDGDMKAVLAWLRRAVRQRS*
Ga0066787_100033461	3300005950	Soil	VPLHHKLVAVALAVPAACGAIIAFIVVAYLLDDGDLRAVLAWVRRVVKRRKS*
Ga0075029_1005728532	3300006052	Watersheds	AVGVAVSLAVPLHHKLVAVALAGLAASCAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Ga0116214_12029272	3300009520	Peatlands Soil	HHKLEAVALAVPAAGCAIVAFGVVAYLLDDGDLKAVLARVRRVVRRRS*
Ga0116221_12073392	3300009523	Peatlands Soil	VGLAVSLAVPLHHKLVAVALAVPAACFAILAFGIVAYFLDAGDLRAVLAWVRRAVRPRS*
Ga0116220_105511322	3300009525	Peatlands Soil	GAAVGVAVSMAVPVHHKLEAFALAVPAAGCAITAFGVVAYLLDDGDLRAVLAWVRRVARLRS*
Ga0116216_102350823	3300009698	Peatlands Soil	HHKLVAAALAVPAAGCAIIAFGVVAYFLDDGDLKAVLAWVRRVVRRS*
Ga0074045_102197892	3300010341	Bog Forest Soil	AVPVHHKLAAFALALPAAVCAILAFGVVAYLLDDGDLKTVLAWVRRTAKLRS*
Ga0134128_130945081	3300010373	Terrestrial Soil	AVGVAISLAVPLHHKLMAAVLAVPAAGGAIIAFGVVAYILDDGDLTAVLAWARRAMRMRS
Ga0136449_1002302092	3300010379	Peatlands Soil	HHKLEAVALAVPAAGCAIVAFGVVAYLLDDGDLKAVLAWVRRAVRRRS*
Ga0136449_1004796382	3300010379	Peatlands Soil	AAPLHHKLEAVALAVPAVGGAILAFGVVAYFLDDGDLKTVLAWERRVARRRS*
Ga0136449_1025241471	3300010379	Peatlands Soil	VPVQHKLEAFALAVPAAGGAIIAFGVVAYLLDDGDLRAVLAWARRVARQRSSPCG*
Ga0134126_107688392	3300010396	Terrestrial Soil	GISLAVPLHHKLVAAALALPAAGGAIIAFGVVAYILDDGDMKAVLAWLRRAVRQRS*
Ga0126361_108655992	3300010876	Boreal Forest Soil	VAISVAVPLHHKLEAFALAVPAAVVAILAFLVVAYLLDDGDLRAVAARLRRAARSRGRAA
Ga0137393_112494192	3300011271	Vadose Zone Soil	VSLAVPLHHKLVAAALAVPAVGCAIIAFGFIAYILDDGDMKAVLAWVRRAARLRS*
Ga0137379_111773341	3300012209	Vadose Zone Soil	ISLAVPVHHKLVAAAVAVPAAGGAIIAFGVVAYILDDGDLRAVLAWLRHAIRPRS*
Ga0137378_115822682	3300012210	Vadose Zone Soil	CAAGTAVGVAISLAVPLNHKLVAVALAVLAACGAIIAFGVVSYILDDGDLTAVLAWVRRAVRPRS*
Ga0137377_118628292	3300012211	Vadose Zone Soil	LHHKLMAVALAILAASGAIIAFGVVAYILDDGDLKAVLAWVRGAVRLRS*
Ga0164309_118857292	3300012984	Soil	SLAVPLNHKLVAAALAVPAACGAIVAFGVVAYVLDDGDLKAVLAWVLRAIWL*
Ga0157370_109540972	3300013104	Corn Rhizosphere	SLAVPLHHKLVAAALALPAAGGAIIAFGVVAYILDDGDLKTVMAWVRGAVRLRS*
Ga0182036_110425002	3300016270	Soil	LHHKLVAVALAVPAAGCAILAFGVVAYLLDDGDLKAVLAWARRGWARLRS
Ga0182035_106475211	3300016341	Soil	PLHHKLEAIALAVPAAGGAIVAFGVVAFLLDDGDLRAVLAWLRRVVRKRS
Ga0182037_107399782	3300016404	Soil	LHHKLEAAALAIPAAGLAILAYAVVAYLLDDGDLKAVLAWARRTARRQA
Ga0182038_100482381	3300016445	Soil	SLAVPLHHKLEAAALAVPAAGCAIIAFGVVAYLLDDGDLRAVLAWARRAMGRLRS
Ga0187809_102751672	3300017937	Freshwater Sediment	PLHHKLVAVALAVPAACFAILAFGIVAYFLDACDLRAVLAWVRRAVRPRS
Ga0187775_103344311	3300017939	Tropical Peatland	VPIHHKLEAFVLAVPAAVCAIIAFAVVAYFLDDGDLRAVLAWGRRVARLRS
Ga0187819_106844952	3300017943	Freshwater Sediment	HKLVAAALAVPAAGLAIIAFAAVAYLLDNGDLKAVLAWTRRALARRRS
Ga0187879_102867023	3300017946	Peatland	VGVAVSLAVPLHHKLVAVALAVPAACCAIIVFTVVAYFLDDGDLRAVLAWVRRLAKPRS
Ga0187817_101328953	3300017955	Freshwater Sediment	AAGTAVGVAVSLSVPSHHKLEAIALAVPAVGCAILAFGVVAYLLDDGDLKAVLAWVRRAARRRS
Ga0187779_104563691	3300017959	Tropical Peatland	VSLAVPLHHKLVAAVLAVPAAGLAIIAFGAVAYLLDDGDLKAVLAWARRVTRRRS
Ga0187779_113219591	3300017959	Tropical Peatland	LAVPLHHKLEAAVLAVPAAGLAIIAFGAVAYLLDNGDLKAVLAWVHRVTRRRP
Ga0187777_114118191	3300017974	Tropical Peatland	AGTAVGVAVSLAVPLHHKLVAVALAVPAAGLAIIAYGIVAYLLDDGDLKTVLAWVRRVARRRS
Ga0187815_100971752	3300018001	Freshwater Sediment	AVGVAVSLAVPLHHKLVAVALAVPAAGLAIIAYGIVAYLLDDGDLKAVLAWVRRVARRRS
Ga0187851_100562597	3300018046	Peatland	VGVTLSIAVPEQHKLEAFALAIPAAGGAVIAFGVVAYLLDDGDLRAVLAWARRVTATRAS
Ga0187784_116662742	3300018062	Tropical Peatland	GVGVAVSLAVPLHHKLVAGALAVPAAGFAIIAYLVVAYLLDDGDLKAVLAWARRAAARLR
Ga0210407_105817591	3300020579	Soil	VAISLAVPLHHKLVAVALAVLAAGCAIIAFGVVAYILDDGDLKAVLSWVRGAVRRRP
Ga0210388_102989351	3300021181	Soil	AAVGVAVSLAVPLHHKLEAVALAVPAAGCAIVAFGVVAFLLDDGDLKAVLTRVRRVVRRR
Ga0210383_107223502	3300021407	Soil	VPLHHKLVAVVVAVPAAGCAIIAFLVIAYFLDDGDLKFVLGWLRRAMAKLRS
Ga0210390_106987092	3300021474	Soil	AVGVAVSLAVPLHHKLEAVALAVPAAGCAIVVFGVVAFLLDDGDLKAVLARVRRVVRRRS
Ga0126371_101433994	3300021560	Tropical Forest Soil	GLAIGVAVPLHHKLEAAALALPAVGCAIIAFCVVAYLLDDSDLRAVLAWVRRAARPPS
Ga0242658_10635073	3300022530	Soil	LHHKLVAVALAVLAAGCAIIVFGVVAYILDDGDLKAVLSWVQGAVRLRS
Ga0224572_10896031	3300024225	Rhizosphere	HHKLVAVALAVPAACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRQS
Ga0207663_106874432	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GVGISLAVPLHHKLVAAALAVPAAGGAIIAFGVVAYILDDGDMKAVLAWLRRAVRQRS
Ga0207700_105591591	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AVPLHHKLVAVALAVLAAACAIIAFGVVAYILDDGDLRAVQAWVRGAIRLRS
Ga0207708_104622641	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSGAENAAFRALPVSLAVPLHHKLVAAALAVLAAGCAIIAFVVVAYILDDGDLKAVLTWLRGAVRSRS
Ga0207676_120294271	3300026095	Switchgrass Rhizosphere	VPLHHKLVAAALAVLAAGCAIIAFVVVAYILDDGDLKAVLTWLRGAVRSRS
Ga0207943_1145161	3300027089	Forest Soil	GVAVSLTVPLHHKLEAGALAVLTAGCAILAFGVVAYLLDSGDLKAVLAWTRRMARRRP
Ga0209327_10102131	3300027307	Forest Soil	GAAGSAAGVAVSLALTGHHKLGTFFLAFPAAFAAIIAFGVVAFLLDNGDLKAVLAWTRRAVTRSRS
Ga0209008_11027481	3300027545	Forest Soil	AVGAGISMAVPLHHKVEAFALAIPAVCGAIIAFGVVAYLLDAGDLKEILRWVRRVTRRRS
Ga0208044_11424042	3300027625	Peatlands Soil	LHHKLVAVALAVPAACCAIIAFTVVAYFLDDGDLRAVLVWVRRVAKLRQS
Ga0209517_105844041	3300027854	Peatlands Soil	GAAVGVAVSMAVPVHHKLEAFALAVPAAGCAITAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Ga0209693_102768381	3300027855	Soil	LAVPLHHKLEAIALAVPAVACSILAFGVVAYLLDDGDLRAVLTWARRVARRR
Ga0268264_125592021	3300028381	Switchgrass Rhizosphere	GVGISLAVPLHHKLVAAALAVPAAGGAIIAFGVVAYILDDGDLKAVLTWLRGAVRSRS
Ga0311340_100208066	3300029943	Palsa	VGVTLSLAVPEQHKLEAFALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVARLRS
Ga0311338_1002103912	3300030007	Palsa	PEQHKLEAFALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVARLRS
Ga0311338_101421241	3300030007	Palsa	VGVTLSLAVPEQHKLEAFLLAIPAACGAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Ga0311353_105420402	3300030399	Palsa	VTLSLAVPEQHKLEAFLLAVPAAGGAVVAFGVVAYLLDDGDLRAVLAWLRGVARLRS
Ga0311372_108547102	3300030520	Palsa	TAVGVAVSLAVPLHHKLVAVALAVPAACGAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRKS
Ga0311372_124589921	3300030520	Palsa	ALAGLVAGVAGAGVGVAFSMAMPMRHRLEDFALAVPADCCAIIAFGVVAYLLDDGDLKAIVARVRRVARRR
Ga0265460_118899811	3300030740	Soil	VGVAISMVVPIHHKLEAFALAVPAAGCAIIAFGVVAYFLDRRDLKVGLDWVRRIARLRSSTGKRAK
Ga0302325_124229641	3300031234	Palsa	VVPLHHKLADAALALPAVLAAILAFGVAAYFLDGGDLKAVLARVRRVIRRADNSPRRG
Ga0302324_1026275343	3300031236	Palsa	PLHHKLADAALAVPAVGAAILAFGAVAYLLDGGDLKAVVARVRRALKER
Ga0302326_134512322	3300031525	Palsa	AVPMRHRLEDFALAVPADCCAIIAFGVVAYLLDDGDLKAIVARVRRVARRR
Ga0318516_100069795	3300031543	Soil	VGLAVSLAVPLHHELEAAALAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAIRPRG
Ga0318534_100140784	3300031544	Soil	VGLAVSLAVPLHHELEAAALAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318534_101843612	3300031544	Soil	GVAVSLAVPLHHKLVAAALAVLAAGGAIIAFGVVAYILDDGDLKAVLAWVRHATRRR
Ga0318538_107100212	3300031546	Soil	GVAVSLAVPLHHKLEAAALAIPAAGLAILAYAVVAYLLDDGDLKAVLAWARRTARRQA
Ga0318571_100309911	3300031549	Soil	VCMAIPLHHKLEAVALALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0318573_101326102	3300031564	Soil	VGLAVSLAVPLHHELEAAALAVPAAGLGIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318555_102712472	3300031640	Soil	LHHKLEALALAIPAAGFAIIAYVGVAYLFDDGDLRAVLAWARRAAARLRS
Ga0318555_105930401	3300031640	Soil	PLHHKLVAAALAVLAAGGAIIAFGVVAYILDDGDLKAVLAWVRHATRRR
Ga0310686_1089357542	3300031708	Soil	GVAVSLAVPLHHKLVAVALAVPAACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRW
Ga0318501_105920521	3300031736	Soil	AIPLHHKLEAVALALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0318502_101380092	3300031747	Soil	VGLAVSLAVPLHHELEAAALAVPVAGLAIVAYAVVAYLLDDGDLRAVLAWARRAIRPRG
Ga0318535_102893261	3300031764	Soil	AAGTAVGLAISVAVPLHHKLEAAALALPAAGCAIIAFCVVAYLLDDGDLRAVFAWVRRVARPRS
Ga0318521_105018941	3300031770	Soil	AGAAVGFAVSVAVPLHHKLEAIALAVPAAGGAIVAFGVVAFLLDDGDLRAVLAWLRRVVRKRS
Ga0318521_107530331	3300031770	Soil	PLHHKLVAVALAMLAAGCAIIAFGVVAYILDDGDLKPVLAWIRKTVRLRS
Ga0318565_104023311	3300031799	Soil	VGVAVSLAVPLHHKLEAAALAIPAAGLAILAYAVVAYLLDDGDLKAVLAWARRTARRQA
Ga0318497_104295632	3300031805	Soil	LAVPLYHKLEAVALAVPAAGGAIVAFGVVAFFLDDGDLRAVLAWLRRVVRKRS
Ga0318564_102825912	3300031831	Soil	ARAVSLAVPLHHKLTALAVSVPAVGCAIIAFGVVAYFLDNGDLRAVLAWLRRAVAKLRS
Ga0318512_106097261	3300031846	Soil	AVSVAVPLHHKLEAIALAVPAAGCAIIAFGVVAYFLDHGDLRSVLSWVRRVARPRS
Ga0318544_100334162	3300031880	Soil	PLHHKLVAVAVAVLAAGCAIVAFGVVAYILDDGDLKAVLAWVRRAAKLRS
Ga0318551_108908211	3300031896	Soil	LAVPLHHKLVAAALAVLAAGGAIIAFGVVAYILDDGDLKAVLAWVRRAAKLRS
Ga0318562_105115321	3300032008	Soil	AVPLHHKLVAVALAVPAAGLAIIAYGIVAYLLDQGDLKAVLAWVRRVARRRH
Ga0318562_108399561	3300032008	Soil	AVPLHHKLVAVALAVPAAGLAIIAYGIVAYLLDQGDLKAVLAWVRRVARRRS
Ga0318533_102968921	3300032059	Soil	SLAVPLHHKLVAAALAVPAAGCAIIAFGVVAYLLDDGDLKAVLAWVRRAMGRLRS
Ga0318510_100598951	3300032064	Soil	IPLHHKLEAVALALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0318518_102012991	3300032090	Soil	VPLHHKLVAAALAVPAAGCAIIAFGVVAYLLDDGDLKAVLAWVRRAMGRLRS
Ga0318540_104790603	3300032094	Soil	GISLAVPLHHKLEAVALAVPAAGGAIVAFGVVAFLLDDGDLRAVLAWLRRVVRKRS
Ga0318540_105536012	3300032094	Soil	AVPLHHKLVAVAVAVLAAGCAIVAFGVVAYILDDGDLKAVLAWVRRAAKLRS
Ga0307472_1014496632	3300032205	Hardwood Forest Soil	VGVAISLAVPLHHKLVAAALAVPAAGGAIIAFGVVAYILDDGDLKVVLAWVRRVVRRRS
Ga0348332_140175742	3300032515	Plant Litter	VSLAVPLHHKLLAVALAVPAAVLAIIAFGVVAYLLDDGDLKAVLAWVRRGMARLRS
Ga0335085_108227452	3300032770	Soil	VSLAMPLHHKLVAVAMAVLAAGCAIIAFGVVAYILDDGDLKAVLAWVRGAVRLR
Ga0335085_126010121	3300032770	Soil	GTAVGVAVSLAVSLHHKLVAVALAVPAAGCAIIAYGVIAYILDDGDLKAVLAWVRGAVRLRS
Ga0335082_104754162	3300032782	Soil	AAVGLGVSVAVPLHHKLEAVALAVPAAGCAIVAFGVVAFLLDDGDLRAVLAWLRRAVRKR
Ga0335073_103001151	3300033134	Soil	SAVGVAISLAVPLHHKLVAVALAVPAAGGAIVAFGVVAYILDDGDMKAVLAWLRRRIRPR
Ga0335077_108773052	3300033158	Soil	AVGLGVSVAVPLHHKLEAVALAVPAAGCAIVAFGVVAFLLDDGDLRAVLARLRRVVRKRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094503

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences