3300001453: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012

Overview

Basic Information

• IMG/M Taxon OID: 3300001453
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056247 | Ga0003483
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57862685
• Sequencing Scaffolds: 41
• Novel Protein Genes: 43
• Associated Families: 34

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	20
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Aquipluma → Aquipluma nitroreducens	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002525	Metagenome / Metatranscriptome	552	Y
F007838	Metagenome / Metatranscriptome	344	Y
F012088	Metagenome / Metatranscriptome	284	Y
F014092	Metagenome / Metatranscriptome	266	Y
F023003	Metagenome	212	N
F024002	Metagenome / Metatranscriptome	208	Y
F024681	Metagenome	205	Y
F029177	Metagenome / Metatranscriptome	189	Y
F035127	Metagenome	173	Y
F036991	Metagenome / Metatranscriptome	169	Y
F040159	Metagenome	162	Y
F041148	Metagenome	160	Y
F042622	Metagenome	158	Y
F046737	Metagenome	151	Y
F050468	Metagenome / Metatranscriptome	145	Y
F053674	Metagenome	141	Y
F054136	Metagenome	140	Y
F056988	Metagenome	137	Y
F071750	Metagenome	122	Y
F074797	Metagenome / Metatranscriptome	119	Y
F079367	Metagenome	116	Y
F079372	Metagenome	116	Y
F081920	Metagenome	114	N
F083423	Metagenome / Metatranscriptome	113	Y
F084837	Metagenome	112	Y
F084901	Metagenome	112	N
F086362	Metagenome	111	Y
F092956	Metagenome	107	Y
F096256	Metagenome	105	N
F098320	Metagenome	104	Y
F100040	Metagenome	103	N
F102124	Metagenome / Metatranscriptome	102	N
F102127	Metagenome	102	N
F104110	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20197J15136_1000720	Not Available	4128
JGI20197J15136_1000926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3656
JGI20197J15136_1001042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	3431
JGI20197J15136_1001647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2663
JGI20197J15136_1002505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2143
JGI20197J15136_1002677	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp.	2072
JGI20197J15136_1003436	Not Available	1817
JGI20197J15136_1003512	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1797
JGI20197J15136_1003536	Not Available	1789
JGI20197J15136_1003792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1719
JGI20197J15136_1003876	Not Available	1697
JGI20197J15136_1004366	All Organisms → Viruses → Predicted Viral	1581
JGI20197J15136_1004641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1523
JGI20197J15136_1004894	All Organisms → cellular organisms → Bacteria	1474
JGI20197J15136_1005294	All Organisms → cellular organisms → Bacteria	1411
JGI20197J15136_1005573	Not Available	1361
JGI20197J15136_1007148	Not Available	1163
JGI20197J15136_1007233	Not Available	1153
JGI20197J15136_1009011	Not Available	996
JGI20197J15136_1009189	Not Available	984
JGI20197J15136_1009577	Not Available	955
JGI20197J15136_1009975	Not Available	929
JGI20197J15136_1011360	Not Available	849
JGI20197J15136_1011781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Aquipluma → Aquipluma nitroreducens	828
JGI20197J15136_1013135	Not Available	770
JGI20197J15136_1013153	All Organisms → cellular organisms → Bacteria	770
JGI20197J15136_1014881	Not Available	706
JGI20197J15136_1015030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700
JGI20197J15136_1016846	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	649
JGI20197J15136_1017751	Not Available	627
JGI20197J15136_1018413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	613
JGI20197J15136_1018528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	610
JGI20197J15136_1018833	Not Available	604
JGI20197J15136_1019215	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	597
JGI20197J15136_1021266	Not Available	560
JGI20197J15136_1021346	Not Available	559
JGI20197J15136_1021609	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	554
JGI20197J15136_1024644	Not Available	511
JGI20197J15136_1024862	All Organisms → cellular organisms → Bacteria	508
JGI20197J15136_1025144	Not Available	505
JGI20197J15136_1025323	All Organisms → cellular organisms → Bacteria	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20197J15136_1000093	JGI20197J15136_10000931	F104110	MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGKDPNIRYYFTQEDVLASNERVVTRSVGEFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPQGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID*
JGI20197J15136_1000720	JGI20197J15136_10007207	F092956	SMPSKVNWMHDSDNRMLARYQHLHKSALKVKASQLQKIQRTETREVCISVLLKAVVICNDTLKEMGFEDYEAGHEQSLLEKSS*
JGI20197J15136_1000926	JGI20197J15136_10009261	F040159	MKALCLKIMVVASLLIYTNGIQAQTTQKEFSKAGSEYNVLDAWSGIWNAQGEARDSISASWYHVDWTLTGKRILNGYALEIMHQWKTKDFTQNGVEITGYDPIKKICMTHIFYDDGTWFNSTPTFTDKRTCIEDGATYYPNGKVEVSRWTWSFSDDWMSFVVIGENLKDDNWWKAFEGKGTKISQNK*
JGI20197J15136_1001042	JGI20197J15136_10010421	F098320	LSFTSVAVQVLLGAGHLSPYTDLVESSGVVTVMSPYSACS*
JGI20197J15136_1001647	JGI20197J15136_10016472	F041148	VKAGAEKLSRGRVLVPAGMSEAWRGFCRPVAGFLSFTSVAVQGLLGAGHLSPYTGLVESSGAVTVMSPYTVFS*
JGI20197J15136_1002505	JGI20197J15136_10025055	F053674	MKKKILFVLVFIMAVLVVNAQVTKTTVTKEKSARTTVKVADLQKAITDNIAKDYVGYTIKEATC
JGI20197J15136_1002677	JGI20197J15136_10026772	F086362	LGKRFTYLLLLLAGLVCSCTKDANLDEWIISNYSGSYKNIEYGENLIREFTAGIYEENAIPDDIKQLQYGRIEIDFQYFGGGLIYFMPLLYYGSMNKNNFDDDVEEPKFHMAIEIGHYNVIPFPVEYLFYTICTFRQPQYCRDTFSPVITGGNYTFIIDKKPEGMILQLKRGANILNIFPHAFFPDSSQLFFRDVTSYIDRNQGDSLKTVLMVGRGFAGIDKGIHDFNGQVTGLRIFKYTISNTDSGYELKQVRNQHSEYQKVTYTASDNFLGNDNFLKLKYQFYPYKFVDGELIPGGGMQTGESAKMLNNKSTSCYLESSDIGFYKVDICTIDKNNNVLRSSVKPFEIWIYPKEWDFEFYK*
JGI20197J15136_1003436	JGI20197J15136_10034361	F023003	MAKNQTHKIDADDDVDDVPDRADMGALADTLVDRGRAVLDRVPTVADSARDALAGAQDQVNGLSDMGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLLN*
JGI20197J15136_1003512	JGI20197J15136_10035123	F084837	IQYLTDPISPNGPAIWGSCVTRRQHRAGSWYFSQKAVTVQGGYGALFAVQVQVLLSITCVAVQG*
JGI20197J15136_1003536	JGI20197J15136_10035362	F083423	DLTPGMTVRARVRTSPAQPVGTWTSWAIAMPGADWEEHDEQAVWEEIDDD*
JGI20197J15136_1003792	JGI20197J15136_10037923	F056988	VGEAEDIPLFFTLIPVLALLSNYDQGNCLINVGTEGAL
JGI20197J15136_1003876	JGI20197J15136_10038761	F053674	MKKKLLFVLVFIMAVLVVNAQVTKTTVTKEKSARTTVKVADLQKAITDNIAKDYVGYTIK
JGI20197J15136_1004366	JGI20197J15136_10043661	F040159	MKTVCLTIMMTVFLLLFSNEIQAQTTQIESPKAGSEYNVLDAWSGIWNVQGEARDSISAPYYPVDWTFTGQRILNGYALEILHQWKTKDFTQNGVEITGYDPIKKICMTHIFYDDGTWLNSTPTFTDKRTCIEDGAMYYPNGKVEVSRWTWNFSDDWMSFAVKGENLKDNVWWKAFEGKGTKSNKK*
JGI20197J15136_1004641	JGI20197J15136_10046414	F102124	FRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEQALQPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20197J15136_1004894	JGI20197J15136_10048941	F079372	TVKVADLQKAITDNIAKDYVGYTIKEATCITTNNTFTYEVVIVEGNNTETLVYDKEGKFVKKLPPPPKKK*
JGI20197J15136_1005254	JGI20197J15136_10052542	F100040	MHIYQKYFLVVLWKILFSQATECIWENAMTKKETRPDLKKIISLGRKGIIDPDYMERWGQFKEDWTEADLATWNKLKEKMTISNSDELEFCPPPSSSEKVWAKKFILRAEERGLC*
JGI20197J15136_1005294	JGI20197J15136_10052942	F036991	RYLCQGKIDCLSEASNMSGIVARNLSGLIWSPMEVPDETDRDVTGDPGDAI*
JGI20197J15136_1005573	JGI20197J15136_10055733	F096256	RKAVRMASRKLESMLVTAMIATVLVSGCLSSLPLGSSPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTTALS*
JGI20197J15136_1007148	JGI20197J15136_10071481	F007838	AEDATKEALEKADRLRQLEKLTEQVNTQKESLQTIKDATEKLRKINRKVANYHNLELALSQVSDSYARVLGCLKTVNEHNCFEPSEYHIISESMMGLLSQTSYAISTLTVVLTDNLSEMTDGERLLNMNQALKELRENLGVINSAIIEVEILDNQRLQLKTLNYINSIFK*
JGI20197J15136_1007233	JGI20197J15136_10072332	F079367	TRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAESEITRLGGAAFIEKSEPMIEELKVYFDNLYESLKRPQSEEVEK*
JGI20197J15136_1009011	JGI20197J15136_10090111	F041148	AEKLSRGRVPAPAGMSEAWRGFCRQVASFLSFTSVAVQVLLKVGNLSPYTDFVESSGAVTVMSPYNVFS*
JGI20197J15136_1009189	JGI20197J15136_10091892	F081920	MSVVLEELTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI20197J15136_1009577	JGI20197J15136_10095773	F098320	PSAGWRGFCRQVASFLSFTSVAVQGLLRAGHLSPYTGLIESSGAVTVMSPYTVFS*
JGI20197J15136_1009975	JGI20197J15136_10099751	F054136	MIENKAQLLADLAYVGSKVQAKTNVYLFSGAAFQWHGLKDATKDIDICCSYEEADRIVSVLRMFGRMESVTGINDIHFLRIFLKSFALQIFIKEIWMGDEYQLLEAAHCDSLTFDGITFLIPDIKTLIMIKDRQIQALYNEWKKLKGEMCI*
JGI20197J15136_1011360	JGI20197J15136_10113601	F074797	MNESEPPMRCRENEHSVKTQRSMMPGEECSGNLLTGYMADVIEEA*
JGI20197J15136_1011781	JGI20197J15136_10117812	F046737	MKPGRISTTIKTAFYFIVFVAITEACNTGQGMMHGGGRSMDMGSWNWVPILISLVIGFLLGYLVARRRK*
JGI20197J15136_1013135	JGI20197J15136_10131351	F096256	MASRKLESMLVTAMIATVLVSGCLSSLPLGSTPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKNKSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDKTADSWVVATAASGATIVTQTTSAL
JGI20197J15136_1013153	JGI20197J15136_10131532	F024681	HRGRTDGGSGEVTRTSRPLLEEDAGQERRMASLTAEGGPGTGLTQPSGGPLFIGFEALARRLSALLEGLTPVHEKAALVSFVGTGITDPNRYEDAAAAFKQLRLMAPAHEGALVQVFRHQLREESQGNDFLYVHFAGDPLSFGFLICALTGGGLMAGWKLG*
JGI20197J15136_1014881	JGI20197J15136_10148811	F041148	IKGVSVAERVKAGAVKLNRGNVPAPAGTSEAWRGFCRQVASFLSFTSVAVQGFLGAGHLSPYTGLVESSGAVTVMSPYTLFS*
JGI20197J15136_1015030	JGI20197J15136_10150302	F042622	MERDLQYIKHQAPLLEYLRRHNWTARQVGSGQEFVGLCPLHPET
JGI20197J15136_1016846	JGI20197J15136_10168461	F098320	SFTSVAVQGLLGAGHLSPYTGLFESSGVVTVKSPYTVFS*
JGI20197J15136_1017751	JGI20197J15136_10177511	F098320	GWRGFCRQVASFLSFASVAVQCYMGAGQLSPYTGWVESSGAITVKSP*
JGI20197J15136_1018413	JGI20197J15136_10184132	F002525	WAGVDSAWEQDSVESWKMLENRADSLLSDARFVGRHLWFIT*
JGI20197J15136_1018528	JGI20197J15136_10185281	F102124	FRTATQLFLDQLKQLTDMTQAAGTTPWTDTAGRPGTELAREVLEHMRSMAEHTPAPTAHLDTFLQELRAKRALIGALQLQLTAFEQQMDILEEALKPLHEWGQEWSTVQRAITDTFVPPDAQLDP*
JGI20197J15136_1018833	JGI20197J15136_10188332	F035127	PGGRVDSAATIPDALAALASQLVDQLPHGLVIWKITDPAGTEHRGNGTLNGRLDLLTISIEELVDELYPQLHRSIDGGPRQAHDIAARATVLSSGQAVRVPWKDSQL*
JGI20197J15136_1019215	JGI20197J15136_10192152	F024002	MPVPAGVIRYFQMAAVVALILMATKDSGSAYLDGAHDPPIIAGQPMGFSIRRAVLTEDVRNLKAARCSHPLSGLRNLFGCSVEGTYDLGQVQPTDMQIDGGRCGRSMTQKQLDMMEARSRFNEMGRKAVP*
JGI20197J15136_1021266	JGI20197J15136_10212661	F012088	PMITTDAPAWLRRSDQAVTWARTMLLRDRAVVIDCETTDLPGGVTGNDGYQNLRNSTRTRLLR*
JGI20197J15136_1021346	JGI20197J15136_10213461	F071750	ALTNTAHLRKILEKHNFEYSTVGETKVITPGTMPNPLIPDLRAFKSENWEPKHQGDQAIVEVSMYEWEPNYAPQPEVIKTIRVMIRRDSTYADKTNEFLEEITNKYPNRSKRYFRNNELYKSYGESFNVFTNDTKIEVRTETIKPIYSRFYIVNFDLIK*
JGI20197J15136_1021609	JGI20197J15136_10216092	F014092	MKKVLIVMVLFMAVLAVNAQTTKTTGTKEKGVRTAVMVADLQKPITDNIAKDYVGYTIKEAASVTANSIVTYHVVIVKGTTTETLVFDKAGVFVKKLPS
JGI20197J15136_1024644	JGI20197J15136_10246441	F084901	PARERYEILVHIALPVCILLPILNYRYLIVVPFIAFLPDVGRAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSDTNKMAEEL*
JGI20197J15136_1024862	JGI20197J15136_10248621	F029177	EGAPLYTAGLGTVSLCPTPTYLLQAGDAHRPHHLNLDKLDKRLMYGQILALAQTMETLDAAPADAL*
JGI20197J15136_1025144	JGI20197J15136_10251442	F102127	RAGGQDRRTSTKGNTTIESNCASGEGGGMSTTCPAWCNSPHRNDWDAESHDGPVWPNIASVDGNGDDSVQIGTRYQSQVGIVVTLEAQSLILTPEQARGAALALLEAASWAKDHRVV*
JGI20197J15136_1025323	JGI20197J15136_10253231	F050468	MDALSSGGLYETGKDAVGFQSAFRSSSEAYLAEDYQMPERLFRVIVRGRYAGAPEEGKEKFLLGSCEIGPEGLGGFETKRLFADVVQFRDEPFFDLGRCLPGDIAGFQLLPRVAES*