3300001144: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1

Overview

Basic Information

• IMG/M Taxon OID: 3300001144
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055317 | Ga0002980
• Sample Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16235956
• Sequencing Scaffolds: 23
• Novel Protein Genes: 27
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000915	Metagenome / Metatranscriptome	836	Y
F002464	Metagenome / Metatranscriptome	557	Y
F002692	Metagenome / Metatranscriptome	536	Y
F007555	Metagenome / Metatranscriptome	349	Y
F009487	Metagenome / Metatranscriptome	317	Y
F016366	Metagenome / Metatranscriptome	247	Y
F022952	Metagenome / Metatranscriptome	212	Y
F023225	Metagenome / Metatranscriptome	211	Y
F024356	Metagenome / Metatranscriptome	206	Y
F026938	Metagenome / Metatranscriptome	196	Y
F033918	Metagenome / Metatranscriptome	176	Y
F035373	Metagenome / Metatranscriptome	172	Y
F039232	Metagenome / Metatranscriptome	164	Y
F039394	Metagenome / Metatranscriptome	164	Y
F045309	Metagenome / Metatranscriptome	153	Y
F049153	Metagenome / Metatranscriptome	147	Y
F052713	Metagenome / Metatranscriptome	142	Y
F065060	Metagenome / Metatranscriptome	128	Y
F071047	Metagenome	122	Y
F073292	Metagenome / Metatranscriptome	120	Y
F073801	Metagenome / Metatranscriptome	120	Y
F076766	Metagenome / Metatranscriptome	117	Y
F084816	Metagenome / Metatranscriptome	112	Y
F093960	Metagenome / Metatranscriptome	106	Y
F094507	Metagenome / Metatranscriptome	106	Y
F095030	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12645J13327_100312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229
JGI12645J13327_100659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	907
JGI12645J13327_100680	Not Available	899
JGI12645J13327_100691	All Organisms → cellular organisms → Bacteria → Proteobacteria	895
JGI12645J13327_100779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853
JGI12645J13327_101290	Not Available	712
JGI12645J13327_101421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684
JGI12645J13327_101505	All Organisms → cellular organisms → Bacteria	670
JGI12645J13327_101526	All Organisms → cellular organisms → Bacteria	669
JGI12645J13327_102053	All Organisms → cellular organisms → Bacteria	608
JGI12645J13327_102092	All Organisms → cellular organisms → Bacteria	604
JGI12645J13327_102096	Not Available	603
JGI12645J13327_102112	Not Available	602
JGI12645J13327_102146	All Organisms → cellular organisms → Bacteria	599
JGI12645J13327_102155	Not Available	599
JGI12645J13327_102426	All Organisms → cellular organisms → Bacteria → Acidobacteria	574
JGI12645J13327_102429	All Organisms → cellular organisms → Bacteria	574
JGI12645J13327_102450	Not Available	573
JGI12645J13327_102483	Not Available	571
JGI12645J13327_102600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563
JGI12645J13327_102640	All Organisms → cellular organisms → Bacteria → Acidobacteria	561
JGI12645J13327_102890	All Organisms → cellular organisms → Bacteria → Acidobacteria	546
JGI12645J13327_103405	All Organisms → cellular organisms → Bacteria	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12645J13327_100312	JGI12645J13327_1003122	F065060	LAEDLKFELAILATVQGFYQKLLRDLLGGEIPLPGG
JGI12645J13327_100659	JGI12645J13327_1006591	F007555	VAIINKGELRGIGAVADLTSSVQSKVEVTWRGSQVPASIKALAAECHVTGDTVRAIVDETQQDAAIDALRRERLHLIAITPVRTSLEAYFVEKLRRAETMAGTTV*
JGI12645J13327_100680	JGI12645J13327_1006801	F093960	MTPKYWLSLDEARSKICRQTNMLGPRSDGPVHQVLMRQALCLASKQYAQARFEKDIEYIHRFFSENKVTSERGVTADHFHDYFAPGRSWDMVHLGLFVDKENQRMLFDPPSGAGEMEFLRIEAVEGMIKQCGASLVVIITCDSLRFGEQLARFTNVIAGHQAIAPRAALDWAKVFYQALSYGEALSQAFYKAQDAADP
JGI12645J13327_100691	JGI12645J13327_1006911	F022952	MGKQNQTTVFPFRIEDRGLSFFLGFLVLIAVFVPMVRLSRCGRIGLDLIFALMLFSGAIATIRHRVLLYLIVALTALEFTADLIVEFNPSLGHRGWDTAVKISGMAILVVMTLKHTFRPGPISVHRVMGGVAAYLLIGLTWAFGYELLMERRPDAIHFQSLVNGTPTGEPSRLIYFSFSTLT
JGI12645J13327_100779	JGI12645J13327_1007792	F073292	RRLKETLGNIGRLLGALLTFRMPAAEVSLDNPQSLKIPYGVALAVTTLGYAVGKLWGRL*
JGI12645J13327_100897	JGI12645J13327_1008971	F002464	MQADLSESARSRRSGILLVAGALGYIATFALIGRVEPDATIAATFGIIPLAVGIGFFVDHALIRRDAKAS*
JGI12645J13327_100942	JGI12645J13327_1009421	F076766	HANMTIAYRHIALPTAVVAGSIIFVLTLTMEIRHYRQSKTLASIERVS*
JGI12645J13327_101290	JGI12645J13327_1012901	F002692	CAAGVMSRLAMALIAYSVLGVLAFATLSDFRIRSLTLLILAMFAFKSWVRRKDVLHPDGDRDPE*
JGI12645J13327_101364	JGI12645J13327_1013641	F049153	ARKPPPXVEQVKPEDIAVRLAEAYARGREEGLAEGRTEASDRHAAELADAGEQAEAQRQKFHLNEYAELEGALRSALRQIEDDVGSAVTRILAPFLTQQVVKRASDELAKAIARLCAGASPGLIKIRGPERVLALLRERIADLPIEVEYVEDDRVETVVEANGTQIVAELRPWADLLASFEA*
JGI12645J13327_101421	JGI12645J13327_1014211	F095030	MSEILKPKSPGRSERHSAAWGKRLSMLLLLLLTESVFAQNWEGGRQVGKFAPDLAPTVARAHRGAAPSETVKVIVQYKQVPQTEQEGKVQRLGARLNHRLHSVKGIALTIPVSALPALEADPEILS
JGI12645J13327_101505	JGI12645J13327_1015051	F000915	MRTPMIDENNLVLFSRSEGDAYQSSKAAELSLNAAILRAEISRSYEEFLDIFETFYADDVEVSREDLQEMIRGKARVRAFLLNVLVPLHVIAEVAGLSISVQQTAVPGDTANETHSAWRIDFTGVGGRRCTLKWYATRRWNASRVVYEHHFDLQQIGGPLTMDDLNLGSGGSDVSI*
JGI12645J13327_101526	JGI12645J13327_1015261	F052713	MAMPEQSFQLGILPERQIDKRALAASYAFLVLLTLLLINLGLLFPDRIQLKAYRVTELIPLPAMRPER
JGI12645J13327_101930	JGI12645J13327_1019301	F000036	MAYKEIFWMACDSTEQLRAEYGPFHTRTEAEAEAHKLGFSYLLRYEHLLDENEEIQEVRCIFLELPGTGAASATPISLHTRCAACGASATHDKTWRAEVWADIHEFEHSRHRVRLFEHARGK
JGI12645J13327_102053	JGI12645J13327_1020532	F039232	MWSRQAARLVTVTVILAGTLIAENKKEYHFTVGPRAGVSVMNPYGSISVKPSLNNVVIVTAILHSDKVEVDNNQSGNRVDIQSHLLPGA
JGI12645J13327_102092	JGI12645J13327_1020921	F073801	VREKKSDRKMFDVGDVFARYLAALEHVTAAVDRMLDSGASGS*
JGI12645J13327_102096	JGI12645J13327_1020961	F016366	MSRLKPGEWALLIVLAASLLVLGVFRERYLAIWTAAWTLMVSSDLWLTFGAGTQIPARCLPALEQAAFVIATGLFAGGVFVYIRERNLLAPLAAVTVSTAGFAVAR
JGI12645J13327_102112	JGI12645J13327_1021121	F033918	MIRSRLSFARLYLKIVTLLLPACAYFISVKVRFGINFLFSRTPPAGLPSYWSILLLTTIVWAIAAEESGLWNVEQLYAPGGKSR
JGI12645J13327_102146	JGI12645J13327_1021461	F009487	MTHFPQPHPSRRAARVQLGDSVLAVIRLEDGRRTKAKLQSISVTGGLLQLQHPLGSGSFVELAFQTQSGPVHGMAEVLSPMRKTTTGVL
JGI12645J13327_102155	JGI12645J13327_1021552	F084816	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVGRQTDTFVR
JGI12645J13327_102426	JGI12645J13327_1024262	F023225	ILHGDHVIVEADKKAGKMKFEVSKRVREKEPVKAKV*
JGI12645J13327_102429	JGI12645J13327_1024291	F026938	RIGTVKQTIVGLANLFGDDLLSDELLELVDRKSGGRQPGFTKACRMILMEANRALSARDVCDRIQKRMPPMLERHKDPMASVTTVLNRLVAYGEAKPVSLDSGRRAWQWVADATPQLSRPAPQ*
JGI12645J13327_102450	JGI12645J13327_1024501	F071047	LKNLVEFSRSLTYVSNYEKMTCLLDTSFNKNYYEYSKIIYDTICPDKFTNKKIFFNKDVELTNPFNNLLFVVKDKEILLNNISDKGYIISQGSKQFRGQINSLNSFLNYLDTDYRKSLYNHSELHYSKGNLDKS*
JGI12645J13327_102483	JGI12645J13327_1024831	F094507	EPIEAQWRSRSNGLCECLLVALALYSLAPRDALAGDQPQSTDARRSWDAQTTARAQIATPSFPARFAFSAPGAETQVFSPTEFRPRKRGLETAAAGSDVSVIDTPMLRDTSIAGELSEARTQDRVRLLTLWQSRASSLSLQTGKHGAPSLQWSTPWMHRDAASRGLFDRLLAVSPRSFASTVRSSASRSA
JGI12645J13327_102600	JGI12645J13327_1026001	F039394	MMTREESKAREQLAALAAEEQGRALLQLALRGIQTSGRGVTIGCWVKPGGGVSGCVFQHAYWQGVAEGTFEPXTEATLGTTETASREIRDLVAERDFHLVMEAIRALDSLGKRRFVRWQGLQRALDEEAWRSTVERLLVDALAEQTTAPASDEARISGIA*
JGI12645J13327_102640	JGI12645J13327_1026401	F035373	VLKTAAVVLAFVSFMLFATASRAQLLPSGNVYVGVAYGDSVDVINRYTFRGWNGSLEDFPFSRYTHVGVVLDASGFYRLGVQQYNVFLGPRLSTNLGKWRPFVQAMGGAQRMTSNGTAHYPVAWDIGG
JGI12645J13327_102890	JGI12645J13327_1028902	F024356	SQPGSEIVQGDYQINQRWSVSLTRDEVGGVSVDGKYHTKF*
JGI12645J13327_103405	JGI12645J13327_1034053	F045309	MKINKSYIAVGLIIALSLFFGLTAHADETDESTTITFSQPIQIPGR