Metagenome / Metatranscriptome Family F084816

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084816
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	66 residues
Representative Sequence	MQTVSDTAKGAGDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTAS
Number of Associated Samples	94
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	87.50 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.643 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.107 % of family members)
Environment Ontology (ENVO)	Unclassified (41.071 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.036 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.04% β-sheet: 0.00% Coil/Unstructured: 36.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07043	DUF1328	74.11
PF03358	FMN_red	21.43
PF07992	Pyr_redox_2	0.89
PF09190	DALR_2	0.89
PF00326	Peptidase_S9	0.89
PF05957	DUF883	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	74.11
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.54 %
Unclassified	root	N/A	29.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.54 %
Unclassified	root	N/A	29.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.64 %
Unclassified	root	N/A	29.46 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.64 %
Unclassified	root	N/A	29.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	21.43 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.89 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33.04 %
Unclassified	root	N/A	29.46 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	27.68 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Suessiaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae	0.89 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Polarella	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella	0.89 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.46 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	21.43 %
Polarella glacialis	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	0.89 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.89 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.89 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001124\|JGI12692J13336_1005881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	652	Open in IMG/M
3300001144\|JGI12645J13327_102155	Not Available	599	Open in IMG/M
3300001661\|JGI12053J15887_10379001	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	681	Open in IMG/M
3300004082\|Ga0062384_100818554	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	652	Open in IMG/M
3300004091\|Ga0062387_100163581	All Organisms → cellular organisms → Bacteria → Proteobacteria	1298	Open in IMG/M
3300004092\|Ga0062389_102533446	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300005610\|Ga0070763_10397208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	775	Open in IMG/M
3300005712\|Ga0070764_10059951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1968	Open in IMG/M
3300005712\|Ga0070764_10219925	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300005921\|Ga0070766_11246067	Not Available	515	Open in IMG/M
3300005944\|Ga0066788_10072600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	831	Open in IMG/M
3300005944\|Ga0066788_10105512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	700	Open in IMG/M
3300005950\|Ga0066787_10144604	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	535	Open in IMG/M
3300006050\|Ga0075028_100932667	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	536	Open in IMG/M
3300006059\|Ga0075017_101383386	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	553	Open in IMG/M
3300009088\|Ga0099830_10676391	Not Available	849	Open in IMG/M
3300009500\|Ga0116229_11392952	Not Available	556	Open in IMG/M
3300009660\|Ga0105854_1286670	Not Available	571	Open in IMG/M
3300009701\|Ga0116228_10845738	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	613	Open in IMG/M
3300010865\|Ga0126346_1150911	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	647	Open in IMG/M
3300011120\|Ga0150983_11005216	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	506	Open in IMG/M
3300012924\|Ga0137413_10574837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	840	Open in IMG/M
3300012929\|Ga0137404_11490274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	626	Open in IMG/M
3300012944\|Ga0137410_11367850	Not Available	614	Open in IMG/M
3300014501\|Ga0182024_11527075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	761	Open in IMG/M
3300015051\|Ga0137414_1072664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	900	Open in IMG/M
3300015051\|Ga0137414_1195946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	735	Open in IMG/M
3300015264\|Ga0137403_11303641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	572	Open in IMG/M
3300019999\|Ga0193718_1084650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	667	Open in IMG/M
3300020062\|Ga0193724_1033325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1097	Open in IMG/M
3300020579\|Ga0210407_10209527	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300020579\|Ga0210407_10458272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	997	Open in IMG/M
3300020579\|Ga0210407_11201859	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	570	Open in IMG/M
3300020581\|Ga0210399_11026416	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	663	Open in IMG/M
3300020583\|Ga0210401_11215372	Not Available	612	Open in IMG/M
3300021170\|Ga0210400_11554516	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300021180\|Ga0210396_10292323	All Organisms → cellular organisms → Bacteria → Proteobacteria	1444	Open in IMG/M
3300021180\|Ga0210396_10358566	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300021181\|Ga0210388_10488979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1080	Open in IMG/M
3300021402\|Ga0210385_11145470	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	597	Open in IMG/M
3300021407\|Ga0210383_11243197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	624	Open in IMG/M
3300021420\|Ga0210394_11433071	Not Available	586	Open in IMG/M
3300021420\|Ga0210394_11563530	Not Available	556	Open in IMG/M
3300021433\|Ga0210391_10761588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	758	Open in IMG/M
3300021475\|Ga0210392_11379702	Not Available	527	Open in IMG/M
3300021479\|Ga0210410_10736922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	868	Open in IMG/M
3300021479\|Ga0210410_11219460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	644	Open in IMG/M
3300021479\|Ga0210410_11675548	Not Available	529	Open in IMG/M
3300021559\|Ga0210409_11063497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	684	Open in IMG/M
3300022530\|Ga0242658_1090914	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	717	Open in IMG/M
3300022557\|Ga0212123_10077327	All Organisms → cellular organisms → Bacteria → Proteobacteria	2830	Open in IMG/M
3300022708\|Ga0242670_1079280	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300022720\|Ga0242672_1123366	Not Available	532	Open in IMG/M
3300025625\|Ga0208219_1090103	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	706	Open in IMG/M
3300025625\|Ga0208219_1093619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	689	Open in IMG/M
3300027117\|Ga0209732_1048711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	735	Open in IMG/M
3300027176\|Ga0208992_1040396	Not Available	632	Open in IMG/M
3300027334\|Ga0209529_1066188	Not Available	615	Open in IMG/M
3300027496\|Ga0208987_1017259	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300027528\|Ga0208985_1097649	Not Available	564	Open in IMG/M
3300027583\|Ga0209527_1118929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	590	Open in IMG/M
3300027738\|Ga0208989_10270025	Not Available	550	Open in IMG/M
3300027812\|Ga0209656_10319191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	714	Open in IMG/M
3300027860\|Ga0209611_10614224	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	598	Open in IMG/M
3300027895\|Ga0209624_10215569	All Organisms → cellular organisms → Bacteria → Proteobacteria	1276	Open in IMG/M
3300027895\|Ga0209624_10644197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	701	Open in IMG/M
3300027895\|Ga0209624_10768057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	634	Open in IMG/M
3300027908\|Ga0209006_10897818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	712	Open in IMG/M
3300027908\|Ga0209006_11524834	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	505	Open in IMG/M
3300028036\|Ga0265355_1022012	Not Available	554	Open in IMG/M
3300028906\|Ga0308309_10980887	Not Available	732	Open in IMG/M
3300029883\|Ga0311327_10790564	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	554	Open in IMG/M
3300029903\|Ga0247271_101683	All Organisms → cellular organisms → Bacteria → Proteobacteria	5394	Open in IMG/M
3300029910\|Ga0311369_11191549	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	589	Open in IMG/M
3300029913\|Ga0311362_10034479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8170	Open in IMG/M
3300029951\|Ga0311371_12261236	Not Available	564	Open in IMG/M
3300030000\|Ga0311337_11569763	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	577	Open in IMG/M
3300030051\|Ga0302195_10196501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	934	Open in IMG/M
3300030617\|Ga0311356_10267982	All Organisms → cellular organisms → Bacteria → Proteobacteria	1721	Open in IMG/M
3300030626\|Ga0210291_11277495	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis	855	Open in IMG/M
3300030730\|Ga0307482_1278580	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	532	Open in IMG/M
3300030730\|Ga0307482_1279585	Not Available	532	Open in IMG/M
3300030741\|Ga0265459_13474779	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	552	Open in IMG/M
3300030879\|Ga0265765_1035832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	647	Open in IMG/M
3300030937\|Ga0138302_1035279	Not Available	501	Open in IMG/M
3300030947\|Ga0075390_11315295	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	500	Open in IMG/M
3300030977\|Ga0265721_1013362	Not Available	551	Open in IMG/M
3300031027\|Ga0302308_10553525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	669	Open in IMG/M
3300031049\|Ga0074036_10985735	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	793	Open in IMG/M
3300031090\|Ga0265760_10286596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	580	Open in IMG/M
3300031231\|Ga0170824_121108258	Not Available	518	Open in IMG/M
3300031233\|Ga0302307_10241359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	928	Open in IMG/M
3300031236\|Ga0302324_100324793	All Organisms → cellular organisms → Bacteria → Proteobacteria	2343	Open in IMG/M
3300031524\|Ga0302320_10532691	Not Available	1405	Open in IMG/M
3300031708\|Ga0310686_111993367	All Organisms → cellular organisms → Bacteria → Proteobacteria	2593	Open in IMG/M
3300031715\|Ga0307476_10026543	All Organisms → cellular organisms → Bacteria → Proteobacteria	3816	Open in IMG/M
3300031715\|Ga0307476_10589606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	824	Open in IMG/M
3300031754\|Ga0307475_10428470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1063	Open in IMG/M
3300031788\|Ga0302319_11784182	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	532	Open in IMG/M
3300031902\|Ga0302322_100889166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	1068	Open in IMG/M
3300031962\|Ga0307479_12070096	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	517	Open in IMG/M
3300033887\|Ga0334790_046811	All Organisms → cellular organisms → Bacteria → Proteobacteria	1644	Open in IMG/M
3300034163\|Ga0370515_0154610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	983	Open in IMG/M
3300034163\|Ga0370515_0481430	Not Available	524	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.43%
Host-Associated	Host-Associated	3.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.18%
Aquatic	Environmental → Aquatic	6.25%
Plants	Host-Associated → Plants	3.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.68%
Peat	Environmental → Terrestrial → Peat	12.50%
Freshwater	Environmental → Aquatic → Freshwater	3.57%
Peat Moss	Host-Associated → Plants → Peat Moss	2.68%
Sediment	Environmental → Aquatic → Sediment	1.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.89%
Loam	Environmental → Terrestrial → Soil → Loam	20.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.57%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.50%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.07%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.36%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.68%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.79%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.79%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001124	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3	Environmental	Open in IMG/M
3300001144	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030947	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030977	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031049	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C2 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12692J13336_10058813	3300001124	Forest Soil	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVGRQTDTF
JGI12645J13327_1021552	3300001144	Forest Soil	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVGRQTDTFVR
JGI12053J15887_103790011	3300001661	Forest Soil	MDSLSDSPVARKVTDYANGQVNNFLDSVEDLTRALKDIESPDIARVRAKVKVALVAAKSAVSDTASQLRSQAVEVGKRTDGFVRD
Ga0062384_1008185541	3300004082	Bog Forest Soil	MESVLDSPTARKVSDYANGQVNNFLDSVDDLTKALKDVDTPEIARVRAKVKIALMAAKSAVADTASQIRSQAQ
Ga0062387_1001635811	3300004091	Bog Forest Soil	MESAAQTAHTVGEYANGQINSFLENVEDLTRALKNIDTPEIARVRAKVKIALVAA
Ga0062389_1025334462	3300004092	Bog Forest Soil	MESAANSPAAHKSGQFANGPVTSFLDSVEDLTNALKDIESPDIVRVRAKVRLALVAAKSAAADTAAQIGSSARQIGQRTDGLV
Ga0070763_103972083	3300005610	Soil	MQTVSDTAKDASDFANGQVKSFLDNVEDLTRALKDVDSPDIAK
Ga0070764_100599515	3300005712	Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVGRQTDTFVR
Ga0070764_102199251	3300005712	Soil	MQSTESAGEHANGQVNNFLENVEDLTKALRDVGTPDIARVRAKVKIALAAAKSAMADSAS
Ga0070766_112460671	3300005921	Soil	MESVPGAQAARKIGEFANGRVNNFLDSVEDLTNALKDVDSPEIARVRAKVKLALAAAKSAAADTVSQIRT
Ga0066788_100726003	3300005944	Soil	MESAFDSPTARKVSDFANGQVNNFLESVEDLTKALKDIDTPDIARVRAKVKMALVAAKSAVADTATQIRSQAQYAGKRADGYV
Ga0066788_101055121	3300005944	Soil	MESVLDSPSARKVSDFANGQVNNFLDSVEDLTKALKYIDTPDVARVRAKVRIALAAAKSAVSDTA
Ga0066787_101446042	3300005950	Soil	MESVTSAARSAGEYANGQVNAFLDNVEDLTRALKDVDTPDIARVRAKVKMALAAAKSAVADGASQLKDQA
Ga0075028_1009326671	3300006050	Watersheds	MESLHDSATARKVSEFANGQVNNFLDSVEDLTKALKDIDTPDIARVRTKVKIALVAAKSAVADTAS
Ga0075017_1013833862	3300006059	Watersheds	MESLQDSATVRKVSEFANGQVNNFLDSVEDLTKALKDIDTPDIARVRTKVKIALVAAKSAVADT
Ga0099830_106763911	3300009088	Vadose Zone Soil	METVPGAPPARKVGEFANGQVNNFLNSVEDLTNALKDIESPEIARVRTKVKLALVAAKSAVSDTASQIRSQAELVGQRTDTLV
Ga0116229_113929521	3300009500	Host-Associated	MESATSTAHDAGEYANGQINSFLQNVEDLTKALKDVETPDISRVKAKVKIALAAAKSAVADTATQLRGRAQEVGKRTDGFVRDNP
Ga0105854_12866702	3300009660	Permafrost Soil	MQSVPDTARVAGDHANGQVNSFLDSVEDLTKTLKDVGTPDIARLRAKVKIALTAAKSAMADTATQFRDQAQHVGKRTD
Ga0116228_108457383	3300009701	Host-Associated	MPSISSKANDEVDYANGQINSFLQNVEDLTTALKDVDTPDIARVKAKVKIALAAAKSAVSDTATHLRGHA
Ga0126346_11509112	3300010865	Boreal Forest Soil	MESLSDSATAHKISDFANGQVNNFLDSVEDLTRALKDIESPDIARVRAKVKVALTAAKSAVSDTASQLRSQAVRSAGARMVTFAIIPGK*
Ga0150983_110052162	3300011120	Forest Soil	MASISSAAKDAGDYANGQINSFLENVEDLTKALKDVETPDVARVRAKVKIALAAAKSAVSDTASQIGDRAQDVGRQLGKHARHYSKQTD
Ga0137413_105748373	3300012924	Vadose Zone Soil	MQSVSDTARSVSDHANGQVRNFLDNVEDLTRALKDVDTPDIAKVRAKVKIALAAAK
Ga0137416_118729342	3300012927	Vadose Zone Soil	MESAPGSSAARKAGDFANAQVNNFLNSVEDLTNALKDVESPEIARVRTKVKLALVAAKSA
Ga0137404_114902743	3300012929	Vadose Zone Soil	MQSVSDTARGVGDHANGQVRNFLDNVEDLTRALKDVDTPDIAKVRAKVKIALAAA
Ga0137410_113678502	3300012944	Vadose Zone Soil	MESVSATAHKAGEFANGQLNSFLSSVEDLTNALKDVESPEIARVRAKVKLALVAARSAVSDTASQIRTQAEQVGRRTDTFVRD
Ga0182024_115270753	3300014501	Permafrost	MQTVSDTAKGANDYANGQVRSFLDNVEDLTKALKDVDSPDIAKLRAKVKIALTAAKSAAADTASQLRN
Ga0137414_10726641	3300015051	Vadose Zone Soil	MESVSAAAHKAGEFANGQLNSFLSSVEDLTNALKDIESPEIARVRAKVKLALVAAKSAVSDTASQIRSASQIRSQAEQ
Ga0137414_11959461	3300015051	Vadose Zone Soil	MQSVSDTARGVGDHANGQVRNFLDNVEDLTRALKDVDTPDIAKVRAKVKIALAAAKSALTDTATQLRGQ
Ga0137403_113036413	3300015264	Vadose Zone Soil	MQSVADTVRGVGDVANGQVNNFLDSVEDLTRALKDVDTPDIAK
Ga0193718_10846501	3300019999	Soil	MQSVSDTVRSVGDHANGQVRNFLDNVEDLTRALRDVDTPDIAKVRAKVKIALAAAKSALDDTATQLRGQAQQVGQRT
Ga0193724_10333251	3300020062	Soil	MESVSAAAHKAGEFANGQLNSFLSSVEDLTNALKDIESPEIARVRAKVKLALVAAKSAVSDTASQIRTQA
Ga0210407_102095275	3300020579	Soil	MQSVSDTARGAGDHANGQVRNFLDNVEDLTRALKDVDTPDIAK
Ga0210407_104582721	3300020579	Soil	MESLSDSPAARKVSDFANGQVSNFLDSVEDLTRALKDIESPDIARVRAKVKVALTAAKSAVADTASQLRSQAVQVGQRTDGYVRDNP
Ga0210407_112018592	3300020579	Soil	MESLQDSATVRKVNEFANGQVNNFLDSVEDLTKALKDIDTPDIARVRTKVKIALVAAKSAVADTASQLRSQAQE
Ga0210399_110264163	3300020581	Soil	MESVLNSPTARSAGDFANGQVTSFLDSVEDLTRALKDIDTPDIARVRAKVRIALVAAKSA
Ga0210401_112153721	3300020583	Soil	MPSVSDTVSDTARSVHDATNGHVQNFLDNVEDLTRALKNVDTPDIAKVRAKVK
Ga0210400_115545162	3300021170	Soil	MQSVSDTARGAGDHANGQVRNFLDNVEDLTRALRDVDTPDIAKVRAKVKIALAAAKRALTDTATQLRG
Ga0210396_102923234	3300021180	Soil	MESVSDSTIAHKAERLANGAVNSFLDSVADLTNALKDIDSPDIARVRTKVKIALMAAQSAVSDTATQIGSQARQIGKR
Ga0210396_103585664	3300021180	Soil	MQTLSDTAKGVGDDANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKV
Ga0210388_104889791	3300021181	Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTKALKDVDSPDIAKLR
Ga0210385_111454701	3300021402	Soil	MQSLSSKAQDAADYANGQINSFLENVEDLTTALKDVDTPDIARVKAKVKIALAAAKSAVADTATQLRGHAEKVGKRTDGFVRYN
Ga0210383_112431971	3300021407	Soil	MQTASDTAKGVGDFANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKVKMALAAAKSAVADTASQLRDQAQ
Ga0210394_114330711	3300021420	Soil	MESLPGSSAARKVGNLTNAQVNNFLSSIEDLTNALKDVESPEIAKVRTKVKLAVVAAKSAASDTAYQIRSQAQQVGQRADTF
Ga0210394_115635301	3300021420	Soil	MQTVADTAKGVGDFANGQVKSFLDNVEDLTKALKDVDSPEIAKVRAKVKIALAAAKSAMADTAS
Ga0210391_107615881	3300021433	Soil	MESVSDSTIAHKAERLANGAVNSFLDSVADLTNALKDIDSPDIARVRTKVKIALMAAQSAVS
Ga0210392_113797021	3300021475	Soil	MQTASDTAKGVGDFANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKVKMALAAA
Ga0210410_107369221	3300021479	Soil	MQTASDTAKGVGDFANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKVKIALA
Ga0210410_112194601	3300021479	Soil	MQSVSDTARNAGDVANGQVRNFLDNVEDLTKALRDVDTPDIAKLRAKVKIALAAAQSAMADTASQLR
Ga0210410_116755481	3300021479	Soil	MPSVSDTVSDTARSVHDATNGHVQNFLDNVEDLTRALKNVDTPDIAKVRAKVKIALAAAQ
Ga0210409_110634973	3300021559	Soil	MESVPGAQAARAVGELANGQVKNFLDSVEDLTNALKDIDSPEIARVRAKVKLALIAAQSAASDTVSQIRSQAEQ
Ga0242658_10909142	3300022530	Soil	MESVTSAARSAGEYANGQVNAFLDNVEDLTRALKDVDTPDIARVRAKVKMALAAAKSAVADGASQLKDQAQYWVNAPMYSCATTPGR
Ga0212123_100773271	3300022557	Iron-Sulfur Acid Spring	MESVPGAQTARKVGEFANGQVKNFLDSVEDLTNALKDVDSPEIARVRAKVKLALVAAKSAASDTVSQIRTQAQE
Ga0242670_10792801	3300022708	Soil	MESVSAAAHKAGEFANGQLNSFLSSVEDLTNALKDIESPEIARVRAKVKLALVAARSAVSDTASQIRSQAEQVGRRTDTF
Ga0242672_11233662	3300022720	Soil	MESVSAAAHKAGEFANGQLNSFLSSVEDLTNALKDIESPEIARVRAKVKLALVAARSAVSDTASQIRSQAE
Ga0208219_10901032	3300025625	Arctic Peat Soil	MESLSDSPAARKVSDFANGQVSNFLDSVEDLTRALKDIESPDIARVRAKVKVALTAAKSAVSDTAS
Ga0208219_10936191	3300025625	Arctic Peat Soil	MQTVSDTAKGVNDYANGQVKSFLDNVEDLTKALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQA
Ga0209648_101016241	3300026551	Grasslands Soil	MESVPGAQAAHKVGEFANGQVNSFLDSVEDLTNALKDVESPEIARVRAKVKLALAAA
Ga0179587_102841331	3300026557	Vadose Zone Soil	MESVSATAHKAGEFANGQLNSFLSSVEDLTNALKDVESPEIARVRAKVKLAL
Ga0209732_10487111	3300027117	Forest Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAV
Ga0208992_10403962	3300027176	Forest Soil	MQSATETARSASDHANGQVNNFLDHVEDLTQALRDVATPDIAKVRAKVKIAL
Ga0209529_10661881	3300027334	Forest Soil	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKS
Ga0208987_10172591	3300027496	Forest Soil	MQSVSDTAKGASDFANGQVRSFLDNVEDLTKALKDVDSPDVAKLRAKVKIALAAAKSAVADTASQLRDQAQQVGRQT
Ga0208985_10976491	3300027528	Forest Soil	MPTVSDTAKGASDFANGQVRSFLDNVEDLTKALKDVDSPDVAKLRAKVKIALAAAKSAVADTASQLRDQAQQVG
Ga0209222_10855051	3300027559	Forest Soil	MESAANSTAKPSPFANGPVNNFLDSVEDLMSSLKDIESPDIARVRAKVRLALVAAKSAAA
Ga0209527_11189291	3300027583	Forest Soil	MQSVSDTARNAGDIANGQVRNFLDNVEDLTKALRDVDTPDIAKLRAKVKIALAAAQSAMA
Ga0208988_11531672	3300027633	Forest Soil	MESLSDSSTVRKVGEFANCQVDNFLDSVEDLTTALKNIDSPDIARVRAKVKIALV
Ga0208989_102700252	3300027738	Forest Soil	MESLSDSSTVRKVGEFANGQVDNFLDSVEDLTNALKDVDSPEIARVRTKVKLALVAARSA
Ga0209656_103191913	3300027812	Bog Forest Soil	MESVSASARNVGNFANGQVNDFLESVEELTKALKDVDTPDIARVRAKVKIALLAAKGAVADTAA
Ga0209611_106142241	3300027860	Host-Associated	MQSVSSKANDAADYANGQINSFLQNVEDLTNALKDVDTPDIARVKAKVKIALAAARSAVTDTATHLRGHAQKV
Ga0209701_101243801	3300027862	Vadose Zone Soil	METVPGAPPARKVGEFANGQVNNFLNSVEDLTNALKDVESPEIARVRAKVKLALAA
Ga0209701_105788813	3300027862	Vadose Zone Soil	MESVPGSAARRVGDFADAQVNNFLNSVEDLTNALKDVDSPEIARVRAKVKL
Ga0209624_102155694	3300027895	Forest Soil	MQTVSDTAKGASDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALA
Ga0209624_106441971	3300027895	Forest Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADT
Ga0209624_107680571	3300027895	Forest Soil	MQTVSDTAKGAGDFANGQVKSFLDNVEDLTKALKDVDSPDIAKVRA
Ga0209006_108978183	3300027908	Forest Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALA
Ga0209006_115248342	3300027908	Forest Soil	MESVLDSPTARKVSDYANGQVNNFLDSVEDLTKALKDIDTPDIARVRAKVKIALVAAKSAVADTAYQIRSQAQQVGKRTDGF
Ga0265355_10220122	3300028036	Rhizosphere	MQTVSDTAKGAGDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVA
Ga0308309_109808871	3300028906	Soil	MQTASDTAKGVGDFANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKVKMAL
Ga0311327_107905641	3300029883	Bog	MESALDSPTARKISDYANGQVNNFLDSVEDLTKALKDVETPDIARVRAKVKIAL
Ga0247271_1016837	3300029903	Soil	MESVIESPTARKISDYANGQVNNFLESVEDLTKALKDIETPDIARVRAKVK
Ga0311369_111915492	3300029910	Palsa	MESVLDSATARKVSDYANGQVNNFLDSVEDLTKALKDVDTPDIARVRAKVKIALVAAKSAVADT
Ga0311362_100344799	3300029913	Bog	MESVLDSTTAHKAGNYANGQVNHFLDSVDDLTKALKDIDTPDVAKVRAKVKMALAAAKSA
Ga0311371_122612361	3300029951	Palsa	MQSTSATAHDASEYANGQINSFLQNVEDLTKALKDVETPDIARVKAKVKIALAAAKSAVSDTATHLRGHAQQ
Ga0311337_115697631	3300030000	Fen	MESVVNSPAHALGDRASAQVNGFLDSVDDLTKALKDIDTPEIARVRAKVKMALMAAKSAVADTASQIGSQARQ
Ga0302195_101965013	3300030051	Bog	MESVLDSTTAHKAGNYANGQVNHFLDSVDDLTKALKDIDTPDVAKVRAKVKM
Ga0311356_102679825	3300030617	Palsa	MESVPDSPAARKVSDYANGQVNNFLDSVEDLTKALKDIDTPDIARVRAKVKIALVAAKSAVADTA
Ga0210291_112774952	3300030626	Soil	MQSVSDTARGVGDHANGQVRNFLDNVEDLTRALKDVDTPDIAKVRAKVKIALAAAKSALSDTATQLRGQAQQAPSQGPCE
Ga0307482_12785801	3300030730	Hardwood Forest Soil	MESVSSAARSAGEYANGQVNAFLDNVEDLTRALKDVDTPDIARVRAKVKMALAAAKSAVADGASQLKDQAQ
Ga0307482_12795851	3300030730	Hardwood Forest Soil	MESVSAAAHKAGEFANGQLNSFLSSVEDLTNALKDIESPEIARVRAKVKLALVAARSAVSDTASQIRSQAEQVG
Ga0265459_134747792	3300030741	Soil	MDSALDSPTARKVSDFANGQVNSFLESVEDLTKALKDIDTPDIARVRAKVKIALAAAKSAVSDTATQIRSQAQQVGRRIK
Ga0265765_10358323	3300030879	Soil	MQTVSDTAKGASDHANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVG
Ga0138302_10352791	3300030937	Soil	MQTVSDTAKGASDFANGQVKSFLDNVEDLTKALKDVDSPDIAKLRAKVKIALSAAKSAAADTASQLRDQAQQVGRQKKKNK
Ga0075390_113152952	3300030947	Soil	MESVSSAARSAGEYANGQVNAFLDNVEDLTRALKDVDTPDIARVRAKVKMALAAAKSAVADGASQLKDQAQYVGKRTDVFVRD
Ga0265721_10133621	3300030977	Soil	MQTVSDTAKGAGDFANGQVKTFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTASQLR
Ga0302308_105535251	3300031027	Palsa	MESAADTARGIGDYANGQINAFLENVEDLTKALKDVDTPEIARVRAKVKMALVAAKSAMA
Ga0074036_109857351	3300031049	Soil	MQSVSDTARSVSDVANGQVRNFLDNVEDLTKALKDVDTPDIAKVRAKVKIALAAAQSAMADTASQLRE
Ga0265760_102865963	3300031090	Soil	MQTVSDTAKGVNDFANGQVKSFLDNVEDLTKALKDVDSPDIAKVRAKVKIALAAAKSAVA
Ga0170824_1211082581	3300031231	Forest Soil	MPSVSDTAKSASDFANGHVNSFLDNVEDLTRALKDVDSPDIAKVRAKVKMALS
Ga0302307_102413593	3300031233	Palsa	MESAANSSAAHKAGHVANDAVKGFLDSVEDLTNAVKDIESPDIARVRAKVRLALVAAKSAAADTAAQIGS
Ga0302324_1003247935	3300031236	Palsa	MESALESPTARKVGDFANGQVSNFLDTVEDLTKALKDIETPDIVRVRAKVKIALAAAKSAASDTAQQLSAQARAVGQRTDG
Ga0302320_105326911	3300031524	Bog	MESALDSPTARKISDYANGQVNNFLDSVEDLTKALKDVETPDIARVRAKVKIALVAA
Ga0310686_1119933674	3300031708	Soil	MQTVSDTSKGLNDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVDCVGRREERGG
Ga0307476_100265431	3300031715	Hardwood Forest Soil	MESVLDSPTARKISDYANGQVNSFLDSVEDLTKALKDIDTPDIARVRTKVKIALVAA
Ga0307476_105896061	3300031715	Hardwood Forest Soil	MESLSDSPAARKVNDFANGQVANFLDSVEDLTRALKDIESPDIARVRAKVKVALTAAKSAVSDTASQLRSQAVQVGKRTDGY
Ga0307476_106352983	3300031715	Hardwood Forest Soil	MESVPGAQAARKVGEFANGQVNSFLDSVEDLTNALKDVDSPDIARVRAKVKLALV
Ga0307475_104284703	3300031754	Hardwood Forest Soil	MQTASDTAKSVGDFANGQVKSFLDNVEDLTRALKDVDSPEIAKVRAKVKIALAAAKSAVADTASQLRDQAQQVG
Ga0302319_117841821	3300031788	Bog	MESVLDSTTAHKAGNYANGQVNHFLDSVDDLTKALKDIDTPDVAKVRAKVKMALAAAKSAVADTASQIGTQAKRVGK
Ga0302322_1008891661	3300031902	Fen	MESAANSSARTLAGRANAQVDSFLDSVDDLTKALKDIDTPDVARVRAKVKMALSAAKSAVADTA
Ga0307479_120700961	3300031962	Hardwood Forest Soil	MQSADTVRGVSDVANGQVNNFLDSVEDLTKALKDVDTPDVAKVRAKVRMALAAAKSAMSDTAAQLRGQAQQVSKRTD
Ga0334790_046811_2_163	3300033887	Soil	MESVLDSPTARKVSDYANGQVNNFLDSVEDLTKALKDVETPDIARVRAKVKNAL
Ga0370515_0154610_792_983	3300034163	Untreated Peat Soil	MQTVSDTAKGAGDFANGQVKSFLDNVEDLTRALKDVDSPDIAKVRAKVKIALAAAKSAVADTAS
Ga0370515_0481430_3_191	3300034163	Untreated Peat Soil	MQSVSDTDRGVGDHANGQVRNFLDNVEDLTRALKDVDTPDIAKVRAKVKIALAAAKSALTDTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084816

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences