Metagenome / Metatranscriptome Family F076766

Overview

Basic Information

• Family ID: F076766
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 117
• Average Sequence Length: 45 residues
• Representative Sequence: YRLIALPTAVVAGSIIFVLALAMEIRHYRQSKTLAAIERMS
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 117

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 6.84 %
• % of genes from short scaffolds (< 2000 bps): 6.84 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (93.162 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.821 % of family members)
• Environment Ontology (ENVO): Unclassified (28.205 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (66.667 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 56.52%
  β-sheet: 0.00%
  Coil/Unstructured: 43.48%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF07722	Peptidase_C26	84.62
PF01128	IspD	4.27
PF02542	YgbB	2.56
PF01938	TRAM	1.71
PF13366	PDDEXK_3	1.71
PF08240	ADH_N	0.85
PF09335	SNARE_assoc	0.85
PF01066	CDP-OH_P_transf	0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0746	Molybdopterin-guanine dinucleotide biosynthesis protein A	Coenzyme transport and metabolism [H]	4.27
COG1207	Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	Cell wall/membrane/envelope biogenesis [M]	4.27
COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Lipid transport and metabolism [I]	4.27
COG2068	CTP:molybdopterin cytidylyltransferase MocA	Coenzyme transport and metabolism [H]	4.27
COG0245	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Lipid transport and metabolism [I]	2.56
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.85
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.85
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.85
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.85
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.85

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
All Organisms	root	All Organisms	6.84 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
cellular organisms	root	All Organisms → cellular organisms	6.84 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.84 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.42 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.85 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.85 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.16 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005602|Ga0070762_11173450	All Organisms → cellular organisms → Bacteria → Acidobacteria	531
3300005712|Ga0070764_10699123	All Organisms → cellular organisms → Bacteria → Acidobacteria	624
3300010398|Ga0126383_12352256	All Organisms → cellular organisms → Bacteria	618
3300018085|Ga0187772_10509252	All Organisms → cellular organisms → Bacteria	849
3300021420|Ga0210394_11069090	All Organisms → cellular organisms → Bacteria	697
3300027853|Ga0209274_10250739	All Organisms → cellular organisms → Bacteria	906
3300028556|Ga0265337_1228522	All Organisms → cellular organisms → Bacteria → Acidobacteria	506
3300032261|Ga0306920_100520246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1765

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.58%
Host-Associated	Host-Associated	3.42%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.47%
Aquatic	Environmental → Aquatic	11.11%
Plants	Host-Associated → Plants	3.42%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Peat	Environmental → Terrestrial → Peat	18.80%
Freshwater	Environmental → Aquatic → Freshwater	9.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.85%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.80%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.71%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.51%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.27%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.71%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.82%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.97%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.42%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.56%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.56%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.71%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.71%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001144	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1	Environmental
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental
3300022557	Paint Pots_combined assembly	Environmental
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental
3300029908	II_Bog_E1 coassembly	Environmental
3300029911	III_Bog_N2 coassembly	Environmental
3300029953	II_Bog_E3 coassembly	Environmental
3300029955	II_Bog_E2 coassembly	Environmental
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental
3300030399	II_Palsa_E2 coassembly	Environmental
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental
3300030503	III_Palsa_E3 coassembly	Environmental
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12645J13327_1009421	3300001144	Forest Soil	HANMTIAYRHIALPTAVVAGSIIFVLTLTMEIRHYRQSKTLASIERVS*
JGI12694J13545_10000501	3300001166	Forest Soil	AYRLIALPAALVAGAIIFVLALTMEIRHYRQSKTLAAIARVS*
JGI12269J14319_101863712	3300001356	Peatlands Soil	MRVAYRHIALPFALAAGSIIFVLGLAMEIRHYRQAKALSGIERLS*
JGI12269J14319_103269802	3300001356	Peatlands Soil	AYRLIALPMALVAGSIIFVLAWILEIRHYRQSKTLSNIERMSRSAL*
JGIcombinedJ26739_1001298114	3300002245	Forest Soil	RLIALPAALVAGAIIFVLALTMEIRHYRQSKTLAAIARVS*
Ga0062387_1006575382	3300004091	Bog Forest Soil	ADMTTAYRHIALPSAVVAGGIIFVLSLTMEIRHYRQTKTLAAIARVS*
Ga0062386_1000877674	3300004152	Bog Forest Soil	AYRQIALPMALVAGSIVFVLSLVMEIRHYRQAKTLSAIERLG*
Ga0062386_1008211601	3300004152	Bog Forest Soil	LSALHHVQPDMTLAYRRVALPVGMIAGSVIFVLALAMEIRHYRQSKTLAAIERMS*
Ga0066672_102771113	3300005167	Soil	SLRHVHPNMTVAYRMIALPAAVLAGSIIFVLALAMEIRHYRQSKTLAAIERVS*
Ga0066688_103116532	3300005178	Soil	LTVAYRNIAFPVAIVVGTIVLVLSLAMEIRHYRQTKALAEIEKAG*
Ga0066676_106380181	3300005186	Soil	GGAAPKVTLAYRNIAVPAAVVAGVIVLVLSLAMEIRHYRQTKALAEIERAG*
Ga0070731_101096584	3300005538	Surface Soil	IALPMALVAGGIIFVLSVGMEVRHYRQSKTLSAIERLS*
Ga0070733_110421582	3300005541	Surface Soil	HPNMTIAYRVVALPTAIVTACIVFVLALVMEIRNYRQSKTLAAIERMS*
Ga0070695_1018637082	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IAYRMIALPTALVAGSIIFVLAVAMEVRHYRQAKTLTAIERMG*
Ga0066661_102088022	3300005554	Soil	AAPKVTLAYRNIAVPAAVVAGVIVLVLSLAMEIRHYRQTKVLAEIDRAG*
Ga0066707_107795291	3300005556	Soil	APKVTLAYRNIAVPAAVVAGVIVLVLSLAMEIRHYRQTKALAEIERAG*
Ga0070761_103979311	3300005591	Soil	LRHAHPNMTIAYRLIALPAAVVAGSIIFVLALSMEIRHYRQSRTLAALEGLMDMRR*
Ga0070762_111734502	3300005602	Soil	DMRIAYRHIAIPMALVAGSIVFVLALVMEVRHYRQNKTLSAIERMG*
Ga0070763_100137317	3300005610	Soil	FAIPMALVAGSIVFVLALVMEVRHYRQNKTLSAIERMG*
Ga0070763_105692701	3300005610	Soil	PNMTLAYRRVALPFAVVAGSIIFVLALAMEIRHYHQMKTLAAIERVS*
Ga0070764_106991232	3300005712	Soil	TVIIAALRHVHPDMRLAYRMIALPFAAVAGIIIFALALGMEIRHYRQMKTLSGIERAS*
Ga0075029_1008191121	3300006052	Watersheds	IAYRHIAVPMAVVAGIIIFSLALTMEIRHYRQAKALAAIEKLS*
Ga0116128_11044781	3300009518	Peatland	DMTLAYRHIALPFAVVAGSIIFVLALAMEIRHFRQMKTLAAIERVS*
Ga0116108_10164525	3300009519	Peatland	RADMTVAYRHIALPFAVVAGSIIFVLALAMEIRHYRQTKTLAAIERVS*
Ga0116216_107008401	3300009698	Peatlands Soil	AYRHVALPMALTAGGIIFVVAVVMEVRYYRQSKTLSAIERMG*
Ga0116217_105772182	3300009700	Peatlands Soil	HVHPDMTSAYRLIALPTAVVAGSIIFVLALAMEIRHYRQSKTLAVIERIS*
Ga0116219_101507771	3300009824	Peatlands Soil	IAYRVFALPAALVAGSIIFVLALTMEVRHYRQMKTLAAIERVS*
Ga0126383_123522562	3300010398	Tropical Forest Soil	RIAYRMIALPIGAVAGTIIFILSLIMEIRHYRQTKALSGIERMG*
Ga0137388_114967162	3300012189	Vadose Zone Soil	VKPNMTVAYRMIALPAAVVAGSIIFVLALTMEIRHYRQSKTLAAIERVS*
Ga0137380_100494291	3300012206	Vadose Zone Soil	LAYRNIAVPAAVVAGVIVLVLSLAMEIRHYRQTKALAEIERAG*
Ga0182015_105795452	3300014495	Palsa	LPTAVVAGSIIFVLALAMEIRHYRQSKTLAALEGLMDTRG*
Ga0182024_100271414	3300014501	Permafrost	MTIAYRQIALPAALVAGSIIFVLALTMEIRHYRQSKTLADIERVS*
Ga0187825_100335271	3300017930	Freshwater Sediment	HPDMRIAYRLIALPMALVAGGIIFVLALAMEIRHYRQSKTLSAIERLG
Ga0187848_100489491	3300017935	Peatland	RADMTVAYRHIALPFAVVAGSIIFVLALAMEIRHYRQTKTLAAIERVS
Ga0187821_103703452	3300017936	Freshwater Sediment	HIALPMALIVGGVVFVLAVIMEVRHYRQAKALSAIERLG
Ga0187817_100223891	3300017955	Freshwater Sediment	ALPMALVAGSIILVLALVMEIRHYRQAKTLSAIERLS
Ga0187780_106277622	3300017973	Tropical Peatland	GVRPDMRVAYRHIAFPIALVAGGIIFAVALVTEIRHFRQAKALTAIERVS
Ga0187782_109087232	3300017975	Tropical Peatland	IAYRHIALPIALVAGSVIFVLALVMEIRHHQQSKTLSAIERAS
Ga0187772_105092521	3300018085	Tropical Peatland	DMRVAYRHIALPVAIVAGSIIFVLATVMEIRHYRQNKTLSAIERMG
Ga0179592_102985971	3300020199	Vadose Zone Soil	LPSALVAGSIIFVLALIMEIRHYRQSKTLSAIERLS
Ga0210403_112838571	3300020580	Soil	LGIVIVSALRHIHPNMTVAYRLIALPAALVAGSIIFVLALAMEIRHYRQSRTLAAIERVS
Ga0210403_113310752	3300020580	Soil	MRVAYRVIALPVALVAGSIIFVLALTMEIRHYRQAKTLAAIERLS
Ga0210399_106847562	3300020581	Soil	VSALRHVHPNMTVAYRLIALPAAVVAGSIIFVLALAMEIRHYRQSRTLAAIERAS
Ga0210400_104793552	3300021170	Soil	VALPVALVAGGIIFVLVVINEIRHYRQSKTLTAIERMN
Ga0210388_105172721	3300021181	Soil	NMTIAYRLIAIPTAMVAGSVIFVLALAMEIRHYRQSRTLDAIARMS
Ga0210393_101889393	3300021401	Soil	HVHPNMTIAYRVIAAPAALVAGSIIFVLALGMEIRHYRQSRSLAAIERLN
Ga0210386_100207331	3300021406	Soil	PAALVAGSIIFVLALTMEIRHYRQSKTLAAIERMS
Ga0210386_100929554	3300021406	Soil	TVILSALHHVHPNMTIAYRVIAAPAALVAGSIIFVLALGMEIRHYRQSRSLAAIERLN
Ga0210386_104759412	3300021406	Soil	RIAYRHIAIPMALVAGSIVFVLALVMEVRHYRQNKTLSAIERMG
Ga0210394_100843205	3300021420	Soil	HVHPNMTIAYRVIAAPAALVAGSIIFVLALGMEIRHYRQSRSLAAIEEIELN
Ga0210394_110690902	3300021420	Soil	HPDMRIAYRQIALPVALVAGSIIFALALAMEIRHYRQAKTLSAIERLG
Ga0210391_102635973	3300021433	Soil	HPNMTVAYRQIALPAAALAASIIFVLALIMEIRHYRQSKTLAAIERMG
Ga0210391_107063622	3300021433	Soil	LRHVNPNMTVAYRDIALPAAVVAGIIIFVLALTMEIRHYRQSKTLAGIERVS
Ga0210402_107551431	3300021478	Soil	RQIALPMALVAGSIVFVLAWILEIRHYRQSKTLSDIERMADSR
Ga0210410_103186411	3300021479	Soil	AYRAIALPAAAVTGSIVFVLSSAMEIRHYRQSKTLDGIARASR
Ga0213853_116005801	3300021861	Watersheds	IAYRQIALPAAVVAGTIILVLALVMEIRHYRQSKTLSAIEKMG
Ga0212123_100371141	3300022557	Iron-Sulfur Acid Spring	RHTAHPDMTLAYRHIALPFAVVAGSIIFVLALAMEIRHFRQMKTLAAIERVS
Ga0224545_10425442	3300022881	Soil	LIAYRQIALPVALVAGGIIFALALVMEIRHYRQTKTLSAIERLG
Ga0224544_10469472	3300023250	Soil	ALPTAVVAGSIIFVLALAMEIRHYRQSKTLAALEGLMDTRG
Ga0224547_10286361	3300023255	Soil	ALPTAIVTGFVVFVLALIMEIRHHRQSKTLAAIERMS
Ga0228598_10444241	3300024227	Rhizosphere	ALPAAVVAGSIIFVLALAMEIRHYRQSKTLAALEGLTDTRG
Ga0209577_103795813	3300026552	Soil	TLAYRNIALPVATVVGTIVLALSLVMEIRHYRQTKALAEIEKAG
Ga0209577_104058692	3300026552	Soil	KVTLAYRNIAVPAAVVAGVIVLVLSLAMEIRHYRQTKVLAEIDRAG
Ga0209221_10528661	3300027609	Forest Soil	IRGARADMTTAYRHVALPCAVVAGSIIFVLSLTMEIRHYRQTKTLAAIARVS
Ga0208044_12086591	3300027625	Peatlands Soil	AYRHVALPAALVAGSIIFVLALAMEIRHYRQSKTLAAIARLS
Ga0209420_10848502	3300027648	Forest Soil	YRLIALPTAVVAGSIIFVLALAMEIRHYRQSKTLAAIERMS
Ga0209736_10301171	3300027660	Forest Soil	IAYRVIALPMALVAGSIVFVLALVMEVRHYRQSKTLSAIERLG
Ga0209333_10636193	3300027676	Forest Soil	ALPAALVTGGIIFVLALIMEIRHYRQSRALAAIARVS
Ga0209038_102413171	3300027737	Bog Forest Soil	IISTLRHVHPEMTVAYRVIALPAALVAGSIIFVLSLAMEIRHYRQSKTLAAIARIS
Ga0209274_102507392	3300027853	Soil	TVAVSGLRGVHPNMTVAYRQIALPATVVAGAIIFVLSLAVEVRHYRQSKTLAAIERMS
Ga0209693_100581631	3300027855	Soil	PNMTLAYRRVALPFAVVAGSIIFVLALAMEIRHYHQMKTLAAIERVS
Ga0209167_106761832	3300027867	Surface Soil	IAYRVVALPTAIVTACIVFVLALVMEIRNYRQSKTLAAIERMS
Ga0209579_102908221	3300027869	Surface Soil	IALPMALVAGGIIFVLSVGMEVRHYRQSKTLSAIERLS
Ga0209275_100034849	3300027884	Soil	PAAALAASIIFVLALIMEIRHYRQSKTLAAIERMG
Ga0209275_109224212	3300027884	Soil	QIALPASLITGSVIFVLALTMEIRHYRQSKTLAAIERMS
Ga0265356_10318371	3300028017	Rhizosphere	AYRHVALPVAAVAGSIIFVLALTMEVRHYRQSKTLAGIARVS
Ga0209526_108675301	3300028047	Forest Soil	IALPAAVVAGSIIFVLALTMEIRHYRQSRTLAAIERVS
Ga0268264_121208751	3300028381	Switchgrass Rhizosphere	FAYKHIALPVAIVAGVIIVVLSSVMEIRHYRQTKAVNSIERAG
Ga0265337_12285222	3300028556	Rhizosphere	LILASLHRVHPDMRIAYRHIALPIGVVAGSIIFALTVIMEIRHYRQTKTLQAIERMS
Ga0302219_103401882	3300028747	Palsa	PAAIVAGSIIFVLTLTMEIRHYRQSRALAAIERVS
Ga0302225_103454431	3300028780	Palsa	RHLNPNMTLAYRRIALPAAIVAGSIIFVLTLTMEIRHYRQSRALAAIERVS
Ga0302225_105103472	3300028780	Palsa	YIALPVAAVAGAIIFVLSLIMEIRHYRQSKALAAIERIS
Ga0302222_101759361	3300028798	Palsa	VSALRHLNPNMTLAYRRIALPAAIVAGSITFVVTLTMEIRHYRQSKTLAAIERVS
Ga0302221_101762302	3300028806	Palsa	YRLIALPTAVVAGSIIFVLALTMEIRHYRQSKTLAAIERMS
Ga0311341_106972142	3300029908	Bog	IVSAVRHTDANMTVAYRLIALPTAAVAGSIIFVLALTMEIRHYRQSKTLAAIERMS
Ga0311361_104376043	3300029911	Bog	VAYRLIALPAAIVAGSIIFVLALAMEIRHYRQSKILAAIARVS
Ga0311343_101600505	3300029953	Bog	AYRLIALPAAIVAGSIIFVLALAMEIRHYRQSKILAAIARVS
Ga0311342_107929481	3300029955	Bog	HPNMTVAYRLIALPAAIVAGSIIFVLALAMEIRHYRQSKTLAAIARVS
Ga0302300_11043761	3300030042	Palsa	MTQAYRLIALPAAVVAGSIIFVLALTMEIRHYRQSKTLAAIARLS
Ga0302286_105392201	3300030047	Fen	LPMALVAGSIVFVLALVMEVRHYRRTKVLPAIERMG
Ga0302177_101224553	3300030053	Palsa	VTVSALHHVHPDMTIAYRLIALPTAVVAGSIIFVLALAMEIRHYRQSKTLAALEGLMDTR
Ga0302176_102352021	3300030057	Palsa	NPDMTMAYRLIALPAALVAGSIVFVLVLTMEIRHYRQSKTLAAIERTS
Ga0311353_116845711	3300030399	Palsa	GIRPNMTIAYRVFALPAALAAGSIIFVLALTLEIRHYHQMKTLAAIARAS
Ga0310037_103265372	3300030494	Peatlands Soil	AYRLIALPMALVAGSIIFVLAWILEIRHYRQSKTLSNIERMSRSAL
Ga0310037_104628961	3300030494	Peatlands Soil	AYRHVALPMALTAGGIIFVVAVVMEVRYYRQSKTLSAIERMG
Ga0311370_113703251	3300030503	Palsa	LAYRRIALPAAIVAGSIIFVLTLTMEIRHYRQSRALAAIERVS
Ga0302183_101041552	3300030509	Palsa	YRQIALPLAAVAGGIVFVLVLAMEIRHYRQSKMLSAIERLG
Ga0311357_111340661	3300030524	Palsa	NMTIAYRLIAVPAAVVAGSIICVLSLSMEIRHYRQSKTLAALEGLIDMRR
Ga0310039_100350034	3300030706	Peatlands Soil	LPMALTAGGIIFVVAVVMEVRYYRQSKTLSAIERMG
Ga0265770_10332851	3300030878	Soil	IVAVSALRSIQPNMTFAYRHIALPAALVAGSVIFVLALVMEIRHYRQSKTLAALARMS
Ga0302180_103580002	3300031028	Palsa	RGIHPNMTIAYRRIALPAAIVAGSIIFVLALAMEIRHYRQAKALAEIERVS
Ga0302326_119390821	3300031525	Palsa	PSALVAGSIIFVLALTMEIRHYRQTKTLAAIERAS
Ga0310686_1082931401	3300031708	Soil	HPNMTVAYRHIALPAAAVAGSIVFVLALAMEIRHYRQSRTLAAIERMG
Ga0310686_1186425941	3300031708	Soil	LPVAAVAASIIFVLALAMEVRHYRQSKTLAAIARVS
Ga0307476_104556292	3300031715	Hardwood Forest Soil	YRLIALPMALVAGGIIFVLALVMEIRHYRQNKTLSAIERLS
Ga0307476_105305941	3300031715	Hardwood Forest Soil	ALPAAVVAGSIIFVLALVMEIRHYRQSKTLAAIERMS
Ga0307476_106813781	3300031715	Hardwood Forest Soil	RIAYRMIAVPVALVAGSIIFVLSLVMEVRHYRQSKTLSAIERMG
Ga0307469_114398562	3300031720	Hardwood Forest Soil	RPNMTVAYRQIAIPAAIVAGSIILVLALAMEIRHYRQSKALAAIERVS
Ga0307477_104493852	3300031753	Hardwood Forest Soil	PAALVAGSIIFVLALATDIRHYRQSKTLAAIERMS
Ga0307475_100403184	3300031754	Hardwood Forest Soil	MRIAYRQIALPMALVAGAIIFVLSLVMEIRHYRQVKALSAIERMG
Ga0307478_104617471	3300031823	Hardwood Forest Soil	AYRYIALPMALVAGGMILVFSISLEVRHYRQMKTLSAIEKMN
Ga0307479_111010782	3300031962	Hardwood Forest Soil	YRQIALPMALVAGSIIFALALAMEIRHHRQSKTLSTIEKIS
Ga0306920_1005202464	3300032261	Soil	RIAYRLIALPMASVAGAIIFVLSLVMEIRHYRQAKALSAIERLR
Ga0335078_1000761816	3300032805	Soil	ALPMALVAGGIVFVLALVMEIRHYRQSKTLSAIERMG
Ga0335074_103211811	3300032895	Soil	YRYIAVPVALVAGSVIFVISLITEIRHYRQRKALAGIERVS
Ga0370483_0299808_58_228	3300034124	Untreated Peat Soil	MLSAIRGVNANMTTAYRHIALPFAAVAGSIIFLLALGMEIRHYRQTKTLAAIERVS
Ga0370492_0224866_612_749	3300034282	Untreated Peat Soil	MTVAYRLVALPAAVVAGSIIFVLALAMEIRHYRQSKTLAAIARVS