3300001141: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300001141
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055310 | Ga0002911
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14173219
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3
Not Available	4
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001823	Metagenome / Metatranscriptome	630	Y
F002851	Metagenome / Metatranscriptome	526	Y
F005285	Metagenome / Metatranscriptome	406	Y
F008323	Metagenome / Metatranscriptome	335	Y
F010939	Metagenome / Metatranscriptome	297	Y
F014301	Metagenome / Metatranscriptome	264	N
F016431	Metagenome / Metatranscriptome	247	Y
F016610	Metagenome / Metatranscriptome	246	Y
F017390	Metagenome / Metatranscriptome	241	N
F025548	Metagenome / Metatranscriptome	201	Y
F025806	Metagenome / Metatranscriptome	200	Y
F026495	Metagenome / Metatranscriptome	197	Y
F029122	Metagenome / Metatranscriptome	189	N
F031624	Metagenome / Metatranscriptome	182	N
F035094	Metagenome / Metatranscriptome	173	Y
F035938	Metagenome / Metatranscriptome	171	Y
F041945	Metagenome / Metatranscriptome	159	Y
F066400	Metagenome / Metatranscriptome	126	Y
F070195	Metagenome / Metatranscriptome	123	Y
F072803	Metagenome / Metatranscriptome	121	Y
F075800	Metagenome / Metatranscriptome	118	Y
F085788	Metagenome / Metatranscriptome	111	N
F099818	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12638J13249_100038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2540
JGI12638J13249_100097	Not Available	1966
JGI12638J13249_100098	All Organisms → cellular organisms → Bacteria	1962
JGI12638J13249_100427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1368
JGI12638J13249_100556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1240
JGI12638J13249_100644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1182
JGI12638J13249_100720	Not Available	1133
JGI12638J13249_100995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	994
JGI12638J13249_101048	Not Available	969
JGI12638J13249_101081	All Organisms → cellular organisms → Bacteria	957
JGI12638J13249_101426	Not Available	844
JGI12638J13249_102092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709
JGI12638J13249_102143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700
JGI12638J13249_102757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626
JGI12638J13249_103213	All Organisms → cellular organisms → Bacteria	581
JGI12638J13249_103280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576
JGI12638J13249_103292	All Organisms → cellular organisms → Bacteria	575
JGI12638J13249_103519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	559
JGI12638J13249_103599	All Organisms → cellular organisms → Bacteria	553
JGI12638J13249_103677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548
JGI12638J13249_103906	All Organisms → cellular organisms → Bacteria	534
JGI12638J13249_104281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513
JGI12638J13249_104534	All Organisms → cellular organisms → Bacteria → Acidobacteria	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12638J13249_100038	JGI12638J13249_1000381	F070195	MTFPRTLTVIVLNLSPADSDASTGTARPINRSNLQCRPFLPRRLTHLRRIDLDHRSRAQTSRFPLERSNQDPTSSANKPSPLSP*
JGI12638J13249_100097	JGI12638J13249_1000971	F025806	TNRTKRRQSDGRAVTKVKRLSLVKYLTAGRQHRSGWEALVGAPQMARWPETAAGSVSTARSDREASRDLGDPLWSWSADKADRVCRTIGIIPEKGRCHSVKSDSLVVLRARESCAHGEAAKQMKTDSRETSPAPTEAGV*
JGI12638J13249_100098	JGI12638J13249_1000981	F026495	VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLVGG
JGI12638J13249_100427	JGI12638J13249_1004271	F029122	MLIRPAIDDTDPIRHRRPTPDGQFSGNIIDEAMRP
JGI12638J13249_100556	JGI12638J13249_1005561	F085788	VIAAIPASNDVNLPGLATTETLTRHVNLNYFSEAVSWEGEERLADADSWRITGNPQVIVRRSD*
JGI12638J13249_100644	JGI12638J13249_1006441	F072803	MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKLPDPVFPRFP
JGI12638J13249_100720	JGI12638J13249_1007201	F025806	AVTKVKRLSLVKYLTAGRQHRSGWEAPVGTPQKARWPETAAGSVSTARSDKEAPRDLGDPLWSWSAHEADRVCRTIRIIPEKGRRHGAKSDSLVVLRARESCVHGEAAKQMKTDSRETSPAPTEAGN*
JGI12638J13249_100995	JGI12638J13249_1009951	F031624	SAMPRVQMPHLCAGWLVSAVGLALVLSSPANAERVHKKQGSYHSQRVAANANARRVKPQDSSAVYWGCCTKMGADPDPFIRSQILRDASGFFGGID*
JGI12638J13249_101048	JGI12638J13249_1010481	F041945	EEMLEKIRQQQSEIEYLRRQREILKKAMSILGEEPHNGMR*
JGI12638J13249_101081	JGI12638J13249_1010812	F035094	RLTENELSDFSRLWHDGCVKAIIEAQDVDRNHSPEV*
JGI12638J13249_101426	JGI12638J13249_1014261	F001823	MREIDRDLIRGEHYGQRSCEPHKQAEHMAADQVCYVKILLANSEPSTHGTKQT
JGI12638J13249_102092	JGI12638J13249_1020922	F025548	TVVDVKSPLQCAGLNRHEAEEEEALRERTSDPLGPEFCAGHREVHGEA*
JGI12638J13249_102143	JGI12638J13249_1021432	F002851	MKSYIETAALITGCGSAAFWFASAMCRLRGINPGKDELDKVTELSNRLQRMSTWNFWAAGLMGVTALLSVWIRFLG*
JGI12638J13249_102757	JGI12638J13249_1027573	F099818	MPVERRGQAIAIWLGSTGVGSNRHQEEPDVQWKAAAFVRWHEPDDARVSSP
JGI12638J13249_103213	JGI12638J13249_1032131	F016431	MLMRVVAVMLLLTAGIAAEAMSYSFVSKASGRLGGPIRFEFYRDSTTRP
JGI12638J13249_103280	JGI12638J13249_1032802	F066400	MLTGVRVFAGVLIRRAVAAQRDSTRLARPQVNPIAANLHAFFAFAPMRLLDRLNRNRIQVRTASGTHDRLA*
JGI12638J13249_103292	JGI12638J13249_1032922	F014301	PQRRAAVQLTLALLELPAPPAMPGVRLDPEARAKAIEILARMIAQTLPTSTQPQNEVADE
JGI12638J13249_103519	JGI12638J13249_1035191	F008323	PSIEGNWMTKTKGPNIHVADLPRRAVGEVVIIGTTPTTSTGMIVFALEDVHVGDNVELDDQQ*
JGI12638J13249_103599	JGI12638J13249_1035992	F035938	NGPLPTTRESESEPSRDVKEMIEASARMERVTVGD*
JGI12638J13249_103677	JGI12638J13249_1036772	F010939	MGYQALLFCPDEKTARIVTQVLNDLDFTVEPCTEPFAAVKKLMAQHFDAVVVDCDNEQNATLLFK
JGI12638J13249_103906	JGI12638J13249_1039062	F005285	RMVGRWSDMNQGSRSGEERRSWLHGGPEEPCPEGDRASVVARKRGNTRGAKGGRKVEA*
JGI12638J13249_103914	JGI12638J13249_1039141	F017390	MKAYAPLVCLIIWTAPCFAETKQSAPLSIQPEAKQSAPLSIQPGTTMLTLNKMCQENPNSRPYAVCMAYLRGLFDGMQQAKIVEDLKSTFCPPQSPDLEQIRLIIEQWVRDNPKNAGVSVGWAGPLALSLAFPCR*
JGI12638J13249_104281	JGI12638J13249_1042811	F016610	MSTLDLTEQPARERARFAAPVPISISRDDTRDPADHRMLYVLGFGIAGAIVTNALVFIYFAVVYASG*
JGI12638J13249_104534	JGI12638J13249_1045342	F075800	EVEVLKLAGVGTEAEVEVFESVGRRIDGGKRWDTGREVGIRSGAGRRGAERGEPCRVFELWRSGFMSQL*