Sample 2209111007

Overview

Basic Information
IMG/M Taxon OID	2209111007 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047522 \| Gp0052438 \| Ga0011208
Sample Name	Cave microbial community (Dry rock wall)
Sequencing Status	Permanent Draft
Sequencing Center	Arizona Genomics Institute
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	195239798
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → PVC group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → speleothem → rock
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007548	Metagenome	349	Y
F011197	Metagenome / Metatranscriptome	294	Y
F013143	Metagenome / Metatranscriptome	274	Y
F017228	Metagenome	242	Y
F022737	Metagenome	213	N
F030737	Metagenome / Metatranscriptome	184	Y
F037481	Metagenome / Metatranscriptome	168	Y
F038611	Metagenome / Metatranscriptome	165	Y
F040821	Metagenome / Metatranscriptome	161	Y
F045408	Metagenome / Metatranscriptome	153	Y
F052571	Metagenome / Metatranscriptome	142	Y
F059254	Metagenome / Metatranscriptome	134	Y
F060269	Metagenome / Metatranscriptome	133	Y
F061707	Metagenome	131	N
F063667	Metagenome / Metatranscriptome	129	Y
F083110	Metagenome	113	N
F085308	Metagenome	111	N
F085487	Metagenome / Metatranscriptome	111	N
F090200	Metagenome / Metatranscriptome	108	Y
F097540	Metagenome / Metatranscriptome	104	Y
F102372	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F007548

Metagenome

349

F011197

Metagenome / Metatranscriptome

294

F013143

Metagenome / Metatranscriptome

274

F017228

Metagenome

242

F022737

Metagenome

213

F030737

Metagenome / Metatranscriptome

184

F037481

Metagenome / Metatranscriptome

168

F038611

Metagenome / Metatranscriptome

165

F040821

Metagenome / Metatranscriptome

161

F045408

Metagenome / Metatranscriptome

153

F052571

Metagenome / Metatranscriptome

142

F059254

Metagenome / Metatranscriptome

134

F060269

Metagenome / Metatranscriptome

133

F061707

Metagenome

131

F063667

Metagenome / Metatranscriptome

129

F083110

Metagenome

113

F085308

Metagenome

111

F085487

Metagenome / Metatranscriptome

111

F090200

Metagenome / Metatranscriptome

108

F097540

Metagenome / Metatranscriptome

104

F102372

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
2214969687	Not Available	532	Open in IMG/M
2214994938	Not Available	528	Open in IMG/M
2215033008	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
2215127715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	515	Open in IMG/M
2215156333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
2215162452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
2215176330	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
2215194924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
2215219445	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
2215220939	All Organisms → cellular organisms → Bacteria → PVC group	507	Open in IMG/M
2215221381	Not Available	1039	Open in IMG/M
2215229300	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
2215229533	Not Available	501	Open in IMG/M
2215232366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
2215240807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	890	Open in IMG/M
2215259127	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2338	Open in IMG/M
2215403274	Not Available	539	Open in IMG/M
2215412717	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
2215438284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	532	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

2214969687

Not Available

532

Open in IMG/M

2214994938

Not Available

528

Open in IMG/M

2215033008

All Organisms → cellular organisms → Bacteria

524

Open in IMG/M

2215127715

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia

515

Open in IMG/M

2215156333

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

513

Open in IMG/M

2215162452

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

513

Open in IMG/M

2215176330

All Organisms → cellular organisms → Bacteria

512

Open in IMG/M

2215194924

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

511

Open in IMG/M

2215219445

All Organisms → cellular organisms → Archaea

508

Open in IMG/M

2215220939

All Organisms → cellular organisms → Bacteria → PVC group

507

Open in IMG/M

2215221381

Not Available

1039

Open in IMG/M

2215229300

All Organisms → cellular organisms → Bacteria → Terrabacteria group

502

Open in IMG/M

2215229533

Not Available

501

Open in IMG/M

2215232366

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

500

Open in IMG/M

2215240807

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

890

Open in IMG/M

2215259127

All Organisms → cellular organisms → Bacteria → Terrabacteria group

2338

Open in IMG/M

2215403274

Not Available

539

Open in IMG/M

2215412717

All Organisms → cellular organisms → Archaea

537

Open in IMG/M

2215438284

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5

532

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
2214969687	2214029599	F007548	INDVLARHAGTAPVFTQGQRLYVDQPHDLYARFPGLTVGDFARQNGMDLAGLLTQLNALAESEDAAGQPATRARAVDEARPGQFSLTLGYTASHRPTEDSTPDSVSVVTVQSSRGPE
2214994938	2214061454	F022737	MGVYAELRGFVLTHRECGVLRGATKEFPGGGFRLAVICPCGARFGRSVSPQDPDADRLREALAVFQG
2215022975	2214096808	F030737	MGTTARTVVLRPSRGTARAGMARQVKQQRRGYAHAVLRGLACSQRGRPTARIQRVLRDSLIPLGVRLSPAALRELAAGIAAGRPVELP
2215033008	2214109347	F090200	MEARVTSQSQPFRLIERMEEAKIFHGQEVRADLPTVRVTALAGGRGGQALFCNMGPIRVREILNRGDDRPLSANITLEGLEVPISGTYDLLD
2215127715	2214225230	F038611	VAWMRMMGADSVAYHEATVMGRADDFPGRALAYYASRGET
2215156333	2214248059	F063667	GRLEEGKSLPLLEFLGSMRYRAEAVTAFLAALELIRLGVVRVFQARPFGEIYAARTKAPFLEEQVRDDYR
2215162452	2214251839	F052571	VAGWGDDPELERLRGLIEDGWEVVEISEDPSEAGGPADVVKLQKGSERAEVTSDHLAFHRYVEYLREEQRD
2215176330	2214259957	F085308	WVEMGRAHPLLVCNPSDMVVPWIGDVAAAPILADMVMAVVERGKDPKVAAKEASDKISRDIIGKAKG
2215194924	2214270358	F017228	TRIMSALGYLAAVNVVIWVGLFFYLWRLDRRISERERSR
2215219445	2214284683	F083110	LGLSKTPDRLADELFALDPRVRYVAVLDRNHKLVESRMRSSVHSLTGEEYDKKFMRSVPPLILDILAQLEAQVGFLSHISIQYERVDLVFSRSTLRFWHLV
2215220939	2214287026	F040821	RQTRPLLTLVIVALLLAGVLATACASGPVSDSKVVRWVDKTVAERQPPAADKRFDEIGWVTDVRTAIKLGKEHNRPIFLYTGDGRINTGRC
2215221381	2214287674	F037481	MSLQAMKYPALNVSAATAELVKSILTLYPQAQVVPRVTPLEDEEISVEVRLPLSMDEIYQARDRVHELVIRLQEQYDVLILASAVPI
2215229300	2214298991	F059254	VRILATRRYPGPAFDELEGVEVRPLAELDAARPDVEGLVV
2215229533	2214299320	F013143	MMSRFILGAIVGAIAVWVWGEEIRRFANTKGRSARLVAADTLQSVQSTAEEMFDTAKDQVTSTLQAGQDVIRPARVNRDRR
2215232366	2214303286	F011197	PGRDRSLVRKAFAPDDLSFQGRFLLESRTFGRGLVAVAAYDSNGYRSPDWVGFQYDSSDTEPKFYEGLPGLWAGIPYDFVWGGAGLEIPGLPDEVAGCLLAT
2215240807	2214315163	F038611	LGWMRMMGADSVEYHRQTVMARADDFPGQALAYYSSRGEAP
2215259127	2214340869	F060269	MGCRIEVFVRSGHTIDLSLEDGEDRVFTSALHEAWASPEAIGFKHLALGENAAILATEVVGYRLHGSVEKGSAPR
2215403274	2214531749	F045408	LSRFVERSRSGQPVDALLQDLRADFGLGGLVLRDAVGRVLATAPPDTGSRPAPRVTLTSDTLFAAGDETPRYGSKGLRLPDGGGRLTLQTARGPVSLDLWEGNEDGFGLDESRTLAIAASMLGLGMR
2215412717	2214543911	F085487	FMTQSPKLAWLNTTKGWVEGTADQAPGTFHAKVYSKK
2215412717	2214543912	F061707	MQVMRFATRVARAVTLVSFHTEVVESNIENATANLVDGVVEMRKRQGEVLLKGGTLKVLRMGRNVTPSRGYFYQITNQGIVFSSTPML
2215433815	2214570995	F097540	MNVRRMKRPSPALVVAMAALLFALGGTAGAVVTQAVPLAKRALVADN
2215438284	2214576693	F102372	LGTSLMDLKAVGKIEREVISTVRNPHVENQIDEVRELYYDGLYVRAYFPAKDHKRLFLEEVEITSPRFRIKHGLDVGASVAALKAVLGEPDETKGGIYSYFGETDGVHFVIESGVITKVRWELYLD

Scaffold ID

Protein ID

Family

Sequence

2214969687

2214029599

F007548

INDVLARHAGTAPVFTQGQRLYVDQPHDLYARFPGLTVGDFARQNGMDLAGLLTQLNALAESEDAAGQPATRARAVDEARPGQFSLTLGYTASHRPTEDSTPDSVSVVTVQSSRGPE

2214994938

2214061454

F022737

MGVYAELRGFVLTHRECGVLRGATKEFPGGGFRLAVICPCGARFGRSVSPQDPDADRLREALAVFQG

2215022975

2214096808

F030737

MGTTARTVVLRPSRGTARAGMARQVKQQRRGYAHAVLRGLACSQRGRPTARIQRVLRDSLIPLGVRLSPAALRELAAGIAAGRPVELP

2215033008

2214109347

F090200

MEARVTSQSQPFRLIERMEEAKIFHGQEVRADLPTVRVTALAGGRGGQALFCNMGPIRVREILNRGDDRPLSANITLEGLEVPISGTYDLLD

2215127715

2214225230

F038611

VAWMRMMGADSVAYHEATVMGRADDFPGRALAYYASRGET

2215156333

2214248059

F063667

GRLEEGKSLPLLEFLGSMRYRAEAVTAFLAALELIRLGVVRVFQARPFGEIYAARTKAPFLEEQVRDDYR

2215162452

2214251839

F052571

VAGWGDDPELERLRGLIEDGWEVVEISEDPSEAGGPADVVKLQKGSERAEVTSDHLAFHRYVEYLREEQRD

2215176330

2214259957

F085308

WVEMGRAHPLLVCNPSDMVVPWIGDVAAAPILADMVMAVVERGKDPKVAAKEASDKISRDIIGKAKG

2215194924

2214270358

F017228

TRIMSALGYLAAVNVVIWVGLFFYLWRLDRRISERERSR

2215219445

2214284683

F083110

LGLSKTPDRLADELFALDPRVRYVAVLDRNHKLVESRMRSSVHSLTGEEYDKKFMRSVPPLILDILAQLEAQVGFLSHISIQYERVDLVFSRSTLRFWHLV

2215220939

2214287026

F040821

RQTRPLLTLVIVALLLAGVLATACASGPVSDSKVVRWVDKTVAERQPPAADKRFDEIGWVTDVRTAIKLGKEHNRPIFLYTGDGRINTGRC

2215221381

2214287674

F037481

MSLQAMKYPALNVSAATAELVKSILTLYPQAQVVPRVTPLEDEEISVEVRLPLSMDEIYQARDRVHELVIRLQEQYDVLILASAVPI

2215229300

2214298991

F059254

VRILATRRYPGPAFDELEGVEVRPLAELDAARPDVEGLVV

2215229533

2214299320

F013143

MMSRFILGAIVGAIAVWVWGEEIRRFANTKGRSARLVAADTLQSVQSTAEEMFDTAKDQVTSTLQAGQDVIRPARVNRDRR

2215232366

2214303286

F011197

PGRDRSLVRKAFAPDDLSFQGRFLLESRTFGRGLVAVAAYDSNGYRSPDWVGFQYDSSDTEPKFYEGLPGLWAGIPYDFVWGGAGLEIPGLPDEVAGCLLAT

2215240807

2214315163

F038611

LGWMRMMGADSVEYHRQTVMARADDFPGQALAYYSSRGEAP

2215259127

2214340869

F060269

MGCRIEVFVRSGHTIDLSLEDGEDRVFTSALHEAWASPEAIGFKHLALGENAAILATEVVGYRLHGSVEKGSAPR

2215403274

2214531749

F045408

LSRFVERSRSGQPVDALLQDLRADFGLGGLVLRDAVGRVLATAPPDTGSRPAPRVTLTSDTLFAAGDETPRYGSKGLRLPDGGGRLTLQTARGPVSLDLWEGNEDGFGLDESRTLAIAASMLGLGMR

2215412717

2214543911

F085487

FMTQSPKLAWLNTTKGWVEGTADQAPGTFHAKVYSKK

2215412717

2214543912

F061707

MQVMRFATRVARAVTLVSFHTEVVESNIENATANLVDGVVEMRKRQGEVLLKGGTLKVLRMGRNVTPSRGYFYQITNQGIVFSSTPML

2215433815

2214570995

F097540

MNVRRMKRPSPALVVAMAALLFALGGTAGAVVTQAVPLAKRALVADN

2215438284

2214576693

F102372

LGTSLMDLKAVGKIEREVISTVRNPHVENQIDEVRELYYDGLYVRAYFPAKDHKRLFLEEVEITSPRFRIKHGLDVGASVAALKAVLGEPDETKGGIYSYFGETDGVHFVIESGVITKVRWELYLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

2209111007: Cave microbial community (Dry rock wall)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences