NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F059254

Metagenome / Metatranscriptome Family F059254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F059254
Family Type Metagenome / Metatranscriptome
Number of Sequences 134
Average Sequence Length 44 residues
Representative Sequence LKVLATRRYPGPAFDELGDVEVLALAELESPRPDVEVLVVANEP
Number of Associated Samples 122
Number of Associated Scaffolds 134

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 69.70 %
% of genes near scaffold ends (potentially truncated) 97.76 %
% of genes from short scaffolds (< 2000 bps) 91.79 %
Associated GOLD sequencing projects 118
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.791 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(17.910 % of family members)
Environment Ontology (ENVO) Unclassified
(31.343 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.731 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.72%    β-sheet: 15.28%    Coil/Unstructured: 75.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 134 Family Scaffolds
PF00413Peptidase_M10 40.30
PF00580UvrD-helicase 14.18
PF13361UvrD_C 4.48
PF06267DUF1028 2.24
PF02811PHP 2.24
PF00082Peptidase_S8 2.24
PF04199Cyclase 1.49
PF00005ABC_tran 1.49
PF12804NTP_transf_3 1.49
PF02274ADI 1.49
PF00565SNase 0.75
PF13365Trypsin_2 0.75
PF07883Cupin_2 0.75
PF08823PG_binding_2 0.75
PF12681Glyoxalase_2 0.75
PF01654Cyt_bd_oxida_I 0.75
PF00498FHA 0.75
PF01933CofD 0.75
PF14333DUF4389 0.75
PF028262-Hacid_dh_C 0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 134 Family Scaffolds
COG5549Predicted Zn-dependent proteasePosttranslational modification, protein turnover, chaperones [O] 40.30
COG0210Superfamily I DNA or RNA helicaseReplication, recombination and repair [L] 14.18
COG10743’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)Replication, recombination and repair [L] 14.18
COG3973DNA helicase IVReplication, recombination and repair [L] 14.18
COG3342Uncharacterized conserved protein, Ntn-hydrolase superfamilyGeneral function prediction only [R] 2.99
COG1834N-Dimethylarginine dimethylaminohydrolaseAmino acid transport and metabolism [E] 1.49
COG1878Kynurenine formamidaseAmino acid transport and metabolism [E] 1.49
COG2235Arginine deiminaseAmino acid transport and metabolism [E] 1.49
COG4874Uncharacterized conserved proteinFunction unknown [S] 1.49
COG0391Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 familyCarbohydrate transport and metabolism [G] 0.75
COG1271Cytochrome bd-type quinol oxidase, subunit 1Energy production and conversion [C] 0.75


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.79 %
UnclassifiedrootN/A8.21 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725002|GPICC_F5MS3JC01EPZIHAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium534Open in IMG/M
2170459021|G14TP7Y01B262BAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria565Open in IMG/M
2209111007|2215229300All Organisms → cellular organisms → Bacteria → Terrabacteria group502Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c2135739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium628Open in IMG/M
3300000033|ICChiseqgaiiDRAFT_c2415177All Organisms → cellular organisms → Bacteria1305Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101174401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria797Open in IMG/M
3300000891|JGI10214J12806_10352436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria867Open in IMG/M
3300000891|JGI10214J12806_12046480All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300000956|JGI10216J12902_103507602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1069Open in IMG/M
3300000956|JGI10216J12902_108911022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1356Open in IMG/M
3300000956|JGI10216J12902_123343470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria665Open in IMG/M
3300001537|A2065W1_10565835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria624Open in IMG/M
3300001686|C688J18823_10332807All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria991Open in IMG/M
3300001686|C688J18823_10632067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria682Open in IMG/M
3300001686|C688J18823_10697105Not Available646Open in IMG/M
3300004013|Ga0055465_10081998All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria933Open in IMG/M
3300004081|Ga0063454_100450506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia884Open in IMG/M
3300004156|Ga0062589_101202923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300005093|Ga0062594_100191480All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1411Open in IMG/M
3300005164|Ga0066815_10038652All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria749Open in IMG/M
3300005180|Ga0066685_10265165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1186Open in IMG/M
3300005184|Ga0066671_10208557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1180Open in IMG/M
3300005440|Ga0070705_100652861All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria820Open in IMG/M
3300005444|Ga0070694_100720611All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria812Open in IMG/M
3300005468|Ga0070707_100083039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3095Open in IMG/M
3300005535|Ga0070684_101032105All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300005552|Ga0066701_10026432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2964Open in IMG/M
3300005553|Ga0066695_10306356All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1001Open in IMG/M
3300005558|Ga0066698_10235560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1260Open in IMG/M
3300005561|Ga0066699_10410133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria970Open in IMG/M
3300005575|Ga0066702_10614254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria652Open in IMG/M
3300005575|Ga0066702_10962270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria510Open in IMG/M
3300005578|Ga0068854_101295717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria656Open in IMG/M
3300005615|Ga0070702_101568805All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria544Open in IMG/M
3300005713|Ga0066905_101096931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia707Open in IMG/M
3300005842|Ga0068858_100571748All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1095Open in IMG/M
3300006048|Ga0075363_100980005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria520Open in IMG/M
3300006173|Ga0070716_101291709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium589Open in IMG/M
3300006194|Ga0075427_10027389All Organisms → cellular organisms → Bacteria926Open in IMG/M
3300006575|Ga0074053_11753041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria630Open in IMG/M
3300006576|Ga0074047_12012264All Organisms → cellular organisms → Bacteria1806Open in IMG/M
3300006755|Ga0079222_12458081All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria522Open in IMG/M
3300006797|Ga0066659_11200241All Organisms → cellular organisms → Bacteria → Terrabacteria group634Open in IMG/M
3300006876|Ga0079217_10578816Not Available722Open in IMG/M
3300006903|Ga0075426_11341555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria543Open in IMG/M
3300007076|Ga0075435_100682794All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria892Open in IMG/M
3300009101|Ga0105247_11482195All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria552Open in IMG/M
3300009137|Ga0066709_101670555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria906Open in IMG/M
3300009147|Ga0114129_13195915All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium533Open in IMG/M
3300009840|Ga0126313_10648825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria852Open in IMG/M
3300010325|Ga0134064_10342143All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria582Open in IMG/M
3300010326|Ga0134065_10079430All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1059Open in IMG/M
3300010333|Ga0134080_10626999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria526Open in IMG/M
3300010373|Ga0134128_12454386All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria574Open in IMG/M
3300010999|Ga0138505_100005181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1341Open in IMG/M
3300011269|Ga0137392_10905204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria726Open in IMG/M
3300011991|Ga0120153_1022222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1414Open in IMG/M
3300012198|Ga0137364_11153114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria582Open in IMG/M
3300012201|Ga0137365_11158297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium555Open in IMG/M
3300012204|Ga0137374_10572121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria866Open in IMG/M
3300012209|Ga0137379_10485619All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1144Open in IMG/M
3300012353|Ga0137367_10776765All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria665Open in IMG/M
3300012354|Ga0137366_10852984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria645Open in IMG/M
3300012356|Ga0137371_10361933All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1127Open in IMG/M
3300012356|Ga0137371_10429863Not Available1023Open in IMG/M
3300012358|Ga0137368_10348073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria986Open in IMG/M
3300012510|Ga0157316_1004285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1075Open in IMG/M
3300012685|Ga0137397_10149464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1730Open in IMG/M
3300012918|Ga0137396_10685896All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria756Open in IMG/M
3300012948|Ga0126375_11521349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria573Open in IMG/M
3300012957|Ga0164303_11479414All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria512Open in IMG/M
3300012960|Ga0164301_10941883Not Available674Open in IMG/M
3300012961|Ga0164302_10450184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria894Open in IMG/M
3300012961|Ga0164302_11774256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria520Open in IMG/M
3300012986|Ga0164304_10997710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria663Open in IMG/M
3300012988|Ga0164306_11268180All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium621Open in IMG/M
3300012989|Ga0164305_10874602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria753Open in IMG/M
3300013306|Ga0163162_10965428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria963Open in IMG/M
3300014150|Ga0134081_10415650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria507Open in IMG/M
3300014259|Ga0075311_1172422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium508Open in IMG/M
3300014272|Ga0075327_1058524Not Available1144Open in IMG/M
3300014301|Ga0075323_1117751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium585Open in IMG/M
3300014314|Ga0075316_1048175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria919Open in IMG/M
3300014745|Ga0157377_11278617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia572Open in IMG/M
3300015077|Ga0173483_10214150All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300015242|Ga0137412_11050781All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium580Open in IMG/M
3300015356|Ga0134073_10351310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria542Open in IMG/M
3300015373|Ga0132257_100000126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria46376Open in IMG/M
3300015374|Ga0132255_104698443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria579Open in IMG/M
3300018027|Ga0184605_10440759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium576Open in IMG/M
3300018052|Ga0184638_1086226All Organisms → cellular organisms → Bacteria1152Open in IMG/M
3300018071|Ga0184618_10021752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2110Open in IMG/M
3300019361|Ga0173482_10586119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria558Open in IMG/M
3300021080|Ga0210382_10032395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1972Open in IMG/M
3300021445|Ga0182009_10585278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria596Open in IMG/M
3300022756|Ga0222622_10176680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1399Open in IMG/M
3300025167|Ga0209642_10405743Not Available763Open in IMG/M
3300025567|Ga0210076_1027188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1224Open in IMG/M
3300025567|Ga0210076_1046146All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300025910|Ga0207684_10486052All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1059Open in IMG/M
3300025941|Ga0207711_11658201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria583Open in IMG/M
3300025961|Ga0207712_10052320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2860Open in IMG/M
3300026023|Ga0207677_10037526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3168Open in IMG/M
3300026040|Ga0208144_1017793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria753Open in IMG/M
3300026062|Ga0208654_1034760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium634Open in IMG/M
3300026317|Ga0209154_1240678All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria643Open in IMG/M
3300026325|Ga0209152_10144420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria905Open in IMG/M
3300026548|Ga0209161_10131423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1467Open in IMG/M
3300026550|Ga0209474_10426166All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria681Open in IMG/M
3300027169|Ga0209897_1038471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba692Open in IMG/M
3300027561|Ga0209887_1017421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1770Open in IMG/M
3300027775|Ga0209177_10210053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium698Open in IMG/M
3300027957|Ga0209857_1068613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha alba609Open in IMG/M
3300028592|Ga0247822_10080010All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2326Open in IMG/M
3300028714|Ga0307309_10017778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1351Open in IMG/M
3300028716|Ga0307311_10227289Not Available551Open in IMG/M
3300028719|Ga0307301_10300427All Organisms → cellular organisms → Bacteria → Terrabacteria group526Open in IMG/M
3300028744|Ga0307318_10142338All Organisms → cellular organisms → Bacteria → Terrabacteria group821Open in IMG/M
3300028744|Ga0307318_10296070All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium567Open in IMG/M
3300028784|Ga0307282_10116005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1252Open in IMG/M
3300028787|Ga0307323_10274040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria607Open in IMG/M
3300028796|Ga0307287_10283770All Organisms → cellular organisms → Bacteria → Terrabacteria group626Open in IMG/M
3300028807|Ga0307305_10103349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1316Open in IMG/M
3300028811|Ga0307292_10236729All Organisms → cellular organisms → Bacteria → Terrabacteria group756Open in IMG/M
3300028811|Ga0307292_10421458Not Available568Open in IMG/M
3300028876|Ga0307286_10118125Not Available939Open in IMG/M
3300028884|Ga0307308_10082734All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1523Open in IMG/M
3300028885|Ga0307304_10257076All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria762Open in IMG/M
3300031226|Ga0307497_10163446All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter935Open in IMG/M
3300031854|Ga0310904_11098355All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria570Open in IMG/M
3300031996|Ga0308176_10121272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2341Open in IMG/M
3300032013|Ga0310906_10037491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2275Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil17.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil16.42%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.45%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands4.48%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.48%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.73%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.99%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.24%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.24%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.24%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.24%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.49%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.49%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.49%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.75%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.75%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.75%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.75%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.75%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.75%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.75%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.75%
Speleothem And Rock Wall SurfacesEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces0.75%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.75%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.75%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.75%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.75%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.75%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.75%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725002Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
2170459007Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cmEnvironmentalOpen in IMG/M
2170459021Litter degradation NP4EngineeredOpen in IMG/M
2209111007Cave microbial community (Dry rock wall)EnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004013Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006194Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1Host-AssociatedOpen in IMG/M
3300006575Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006576Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010999Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011991Permafrost microbial communities from Nunavut, Canada - A34_65cm_12MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012510Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610Host-AssociatedOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014272Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1EnvironmentalOpen in IMG/M
3300014301Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D1EnvironmentalOpen in IMG/M
3300014314Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2EnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025167Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025567Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026040Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026062Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027169Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027561Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027957Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028714Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPICC_019946902067725002SoilVKVLATRRYPGRALDELDVEVLPLTDLREPRDDVEALI
L02_005049902170459007Grass SoilRLPGPAWDELRDVEVGPLGERREDVEAIVVANERVDEAMLDLLPSL
4NP_028579802170459021Switchgrass, Maize And Mischanthus LitterLKVLATRRYPGPAFEELADVEVGSLADLHAPRPDVQALLVANETVPR
22142989912209111007Speleothem And Rock Wall SurfacesVRILATRRYPGPAFDELEGVEVRPLAELDAARPDVEGLVV
ICChiseqgaiiDRAFT_213573913300000033SoilLKVLATQRYPGPAFDELGHVEVRALAELKGPRPEVEALVVANEPVPLDLLPEL
ICChiseqgaiiDRAFT_241517713300000033SoilVRVLATRRYPGPALDELSDLEIATLASLDGPRADVEGLVVANERPPLE
INPhiseqgaiiFebDRAFT_10117440113300000364SoilLKVLATRRYPGPAFDELGDVEIGAPEARDDVEALIV
JGI10214J12806_1035243623300000891SoilVKVLATRRYPGPAFEELDDVEVFPLSELAAPRPDVEAL
JGI10214J12806_1204648033300000891SoilVKVLATRRYPGPALHELADLEIAPLASLDAPRPDVEGLVVANEPPPL
JGI10216J12902_10350760233300000956SoilLKVLATHRYPGPAFDELGDVEVRALAELEAPRPDVEALVVANEPVPLDLLPGLRL
JGI10216J12902_10891102233300000956SoilLKVLATRRYPGPAFDELLDVEVGPLEAHANIEALVVANEPVDPAAFPSLRL
JGI10216J12902_12334347013300000956SoilLKVLATRRYPGPAFDELGEVEVGALEPREDVEALIVANEPIDAAHFPSLRL
A2065W1_1056583523300001537PermafrostLKVLSTRKYPGPAFDELADVEVQPLAELTSPRPQVEALVVANEPVP
C688J18823_1033280713300001686SoilLKVLATRRYPGPAFDELGDVEVRALGELRSARPDVQALLVANEPVPLDLLPAL
C688J18823_1063206723300001686SoilLKVLATRRYPGPAFDELGDVEVGPLQPRGDVEALLVANEPVDASDF
C688J18823_1069710513300001686SoilVKILSTRRYPGRAFDELREVEVVPLASLGEPREDVEGLLVANEPV
Ga0055465_1008199823300004013Natural And Restored WetlandsVKVLSTRRYPGPAFDELPDVVVAALDHLREPDPGIEALIV
Ga0063454_10045050613300004081SoilVRVLATRRYPGPAFAELDDVEIAALEEVTEPRRGVEALIGGNERVDAA
Ga0062589_10120292323300004156SoilLKVLATRRYPGPAFEELRDVEVGELRPRDDVEALVVANDPVEPAHFP
Ga0062594_10019148013300005093SoilLKILATRRYPGPAFDELGDAEIGPLRPRDDVEVLVVANEP
Ga0066815_1003865223300005164SoilMLAGVKVFATRRYPGPAFDELDDVEVAPLERLEAPRDDVEGLIVANEPVPLDLLPSL
Ga0066685_1026516533300005180SoilLKVLATHRYPGPAFDELGDVEVRALADLESPRPEVEALVVANEPVPLDLLPGLR
Ga0066671_1020855733300005184SoilLKVLAARRYPGPALAELSDMEVLAPSELWSRRPDVEVLIVANEPVPFDLLPS
Ga0070705_10065286123300005440Corn, Switchgrass And Miscanthus RhizosphereMLAGVKVFATRRYPGPAFDELDDVEVAPLVQLDAPRDDVEGLVVANEPVP
Ga0070694_10072061123300005444Corn, Switchgrass And Miscanthus RhizosphereMLAGVKVFATRRYPGPAFDELDDVEVAPLVQLDAPRDDVEGLVV
Ga0070707_10008303943300005468Corn, Switchgrass And Miscanthus RhizosphereLKVLATRRYPGPAFDELTDVEIGPLSKPRPDVQAVVVANEPVP
Ga0070684_10103210513300005535Corn RhizosphereMLAVVKVFATRRYPGPAFDELGDVEVAPLDALEGPRDDVSGLIVANEPVPLERF
Ga0066701_1002643213300005552SoilLKVLATRRYPGPAFDELSEVEVGPLSARREDVEAVIVA
Ga0066695_1030635613300005553SoilLKVLATRRYPGPAFDELGDVEIGQLESRDDVDALIVANEPVDG
Ga0066698_1023556033300005558SoilMSAWETRALKVLATRRYPGPAFDELTNVEIGPLSEPRPDVEAVIVANEP
Ga0066699_1041013333300005561SoilLKVLATRRYPGPAFDELADVDVGPLTARPDVEGLIV
Ga0066702_1061425413300005575SoilLKVLATRRYPGPAFDELEDVEVAPLETVTAPQDDIEALIVANEAVPLD
Ga0066702_1096227023300005575SoilLKVLATRRYPGAAFDELGDVEIRPLEAHDDVEALIVANE
Ga0068854_10129571723300005578Corn RhizosphereMLAGVKVFATRRYPGPAFDELDDVEVAPLVELDAPRDDVEG
Ga0070702_10156880513300005615Corn, Switchgrass And Miscanthus RhizosphereMLAVVKVFATRRYPGPAFDELGDVELAPLDALEDPREDVGGLI
Ga0066905_10109693113300005713Tropical Forest SoilLKVLATRRYPGPAFEELGDVEIGPLQPRADVEALMVANEPVDPGAFPALGL
Ga0068858_10057174833300005842Switchgrass RhizosphereLKVLATRRYPGPAFDELGDVEVRALGELESARPDV
Ga0075363_10098000523300006048Populus EndosphereVKILATRRYPGPAFDELDDVEVLALSELTAPRPDVEALV
Ga0070716_10129170923300006173Corn, Switchgrass And Miscanthus RhizosphereLKVLATRRYPGPAFDELGDVEVRALGELESARPDVEALLVA
Ga0075427_1002738913300006194Populus RhizosphereVKVLATRRYPGPALDELSDLEIATLASLDGPRADVEGLVVANERPPLELL
Ga0074053_1175304123300006575SoilMLAGVKVFATRRYPGPAFDELGDVEVGPLERLEAPRDD
Ga0074047_1201226443300006576SoilVKILSTRRYPGPAFDELDDVEVQPLAELDSSRPDIEGLVVANEPVPLDLLP
Ga0079222_1245808123300006755Agricultural SoilMLAGVKVFATRRYPGPAFDELGDVEVAPLEAAGEDVEGLVVANEPVPL
Ga0066659_1120024113300006797SoilMRIIATRRYPGPAFDELTDVEVLPLTALGGPRPGVEGLVVANEPVPFDLL
Ga0079217_1057881613300006876Agricultural SoilVKVLATRRYPGPAFDELGDVEISSLGLERPRPDVEGMI
Ga0075426_1134155513300006903Populus RhizosphereVKVLATRRYPGPAFDELDDVEVLALSELTALRPDVEALVVANEPPPLDLLPDLR
Ga0075435_10068279433300007076Populus RhizosphereLKVLATRRYPGPAFDELRDVEIGAPSSPRSDVVVVIVANEPVPLD
Ga0105247_1148219513300009101Switchgrass RhizosphereMLAGVKVFATRRYPGPAFDELDDVEVAPLVQLDAPRDDVEGLVVANEPVPLDLLPR
Ga0066709_10167055523300009137Grasslands SoilLKVLATRRYPGPGFEELRDVEVGELRPRHDVEALVVATD
Ga0114129_1319591513300009147Populus RhizosphereVKVLATRRYPGPALDELSDLEIATLASLDGPRADVEGLVVANERPPLELLPSLR
Ga0126313_1064882513300009840Serpentine SoilLKVLATRRYPGPAFDELDDVEVGPLEPRPDVEALIV
Ga0134064_1034214323300010325Grasslands SoilLKVLATRRYPGPAFEELRDAEVGSLSAPRDGVEAVI
Ga0134065_1007943033300010326Grasslands SoilLKILATRRYPGPAFDELGDVEVGQLQPRDDVEVLV
Ga0134080_1062699923300010333Grasslands SoilMLAAVVKVLATRRYPGPAFEELDVEVLPLDALASARNDVEGLIVANEE
Ga0134128_1245438613300010373Terrestrial SoilLKILATRRYPGPAFDELGDAEIGPLRPRDDVEVLVVANEPVDPAAFPALRL
Ga0138505_10000518133300010999SoilLKVLATRRYPGPAFDELGDVEVRALAELQSARPDVEALL
Ga0137392_1090520413300011269Vadose Zone SoilLKVLATRRYPGPAFDELADVEVRALAELTTPRPDVEALVVAN
Ga0120153_102222233300011991PermafrostLKVLATRRYPGPAFDELGDVEVRALAELESPRPEVEALVVANEPVPLDLLPGLRL
Ga0137389_1101155913300012096Vadose Zone SoilVKVLSTHRLPGPAWEELRDVEVAALGARREDVEALIVANERVDEATLDLLPS
Ga0137364_1115311423300012198Vadose Zone SoilLKVLATHRYPGPAFDELGDVEVQALADLQSPRPEVEALV
Ga0137365_1115829723300012201Vadose Zone SoilLKVLATRRYPGPAFDELADVDVRALAELVSPRPDVEGLVVANEPVPVELLPGLR
Ga0137374_1057212113300012204Vadose Zone SoilLKVLATRRYPGPAFEELSDAEVAPLEPREDVEVLIVAN
Ga0137379_1048561913300012209Vadose Zone SoilLKVLATHRYPGAPFDERGDVEVRALADLESPRLELEALVVANEPVPLDLQPG
Ga0137367_1077676513300012353Vadose Zone SoilLKVLATRRYPGPAFEELGDVEVGPLTPRDDVEAVIVANEP
Ga0137366_1085298423300012354Vadose Zone SoilLKVLATRRYPGPAFDELADVEVGPLEAAPAGVEALVVANEP
Ga0137371_1036193313300012356Vadose Zone SoilMSACETHALKVLATRRYPGSAFEELSDVEVMPLAALTEPRHDVEGLIVANEP
Ga0137371_1042986313300012356Vadose Zone SoilVKVVATRRYPGPAFDELDDLELLPLAALDGARPDVEALLVTNEPVPLDL
Ga0137368_1034807333300012358Vadose Zone SoilLKVLATRRYPGPAFEELEDVEVGSLSARDDVQALIV
Ga0157316_100428513300012510Arabidopsis RhizosphereMRDPAAVKVLATRRYPGPALTELGDLEIAPLGALDEPRDDVEGL
Ga0137397_1014946433300012685Vadose Zone SoilLKVLATRRYPGPAFDELADVEVRALSELKSPSPDVE
Ga0137396_1068589613300012918Vadose Zone SoilLKVLATRRYPGPAFDELADVEVRALSELKSPRPDVEA
Ga0126375_1152134913300012948Tropical Forest SoilLKVLATRRYPGPAFDELRDVEVGPLEARDDVEALIVANEPVDPAAF
Ga0164303_1147941423300012957SoilMLAAVKVFATRRYPGPAFDELGDVEVARLDSLQEPRHDVEGLIVANEPV
Ga0164301_1094188313300012960SoilMLAAVVNVLATRRYPGPAFDELGDVEVAPLDSLHKPREDVEGLIVANEPVSLQL
Ga0164302_1045018413300012961SoilLKVLATRRYPGPAFDELGDVEVRALGELESARPDVEALLVANEPVPV
Ga0164302_1177425623300012961SoilVKVFATRRYPGPAFDELDDVEAAPLERLEAPRDDVEG
Ga0164304_1099771023300012986SoilLKVLATRRYPGPAFDELRGVEIAPLETVTSAQDGIEALILANEPVRLELF
Ga0164306_1126818023300012988SoilLKVLATLRYPGPAFDELGDVEVRALAELKSSRPEIEALIVANEPVPL
Ga0164305_1087460213300012989SoilMLAGVKVFATRRFPGPAFDELDDVEVAPLERLEAPREDVEGLI
Ga0163162_1096542813300013306Switchgrass RhizosphereVKVLATRRYPGPAFEQLDAVEVSPLAELTRPRADVEALVVANE
Ga0134081_1041565013300014150Grasslands SoilMSAWDTRRLKVLATRRYPGPAFDELRDVELGQLEEPRDDVEALIV
Ga0075311_117242223300014259Natural And Restored WetlandsVRVLATRRYPGPALDELSDLEIATLASLEGPRPDVEGLVVANEPPPFELLPSL
Ga0075327_105852413300014272Natural And Restored WetlandsVKVLATRRYPGPALDELGEVEVLPLHAITQPRPDVEALVVANEPVPLELLPGL
Ga0075323_111775123300014301Natural And Restored WetlandsVKVLATRRYPGPALGELADLEVAPLTSLEGPRADVEGLVVANEPPPFELL
Ga0075316_104817523300014314Natural And Restored WetlandsMKVLATRRYPGPAFDELDDVEVAALESLTDSRPGIEALVAG
Ga0157377_1127861713300014745Miscanthus RhizosphereVKVLATRRYPGAAFAELDNVEIAALEDVTAPRPGVEALI
Ga0173483_1021415013300015077SoilVRVLATRRYPGPALDELSDLEIATLASLDGPRADVEGLVVANERPPLELLPS
Ga0137412_1105078123300015242Vadose Zone SoilLKVLATRRYPGPAFDELGDVEVLALAELESPRPDVEVLVVANEP
Ga0134073_1035131013300015356Grasslands SoilLKVLATRRYPGPAFDELGDVEVGPLQSRDDVEALL
Ga0132257_10000012613300015373Arabidopsis RhizosphereVQVLATRRYPGPAFDELANVEVVALPSLDAPRPGIEGLVVANEPP
Ga0132255_10469844323300015374Arabidopsis RhizosphereLKVLATRRYPGPAFDELGDVEVGPLEPRGDVEALIVANE
Ga0184605_1044075923300018027Groundwater SedimentLKVLATRRYPGPAFDEFVDVEVQALAELESHRSAVDALVG
Ga0184638_108622623300018052Groundwater SedimentVKVVATRRYPGPAFDELVDVEVLPLDKLREPRDDVEGLVVAN
Ga0184618_1002175233300018071Groundwater SedimentVKVVATRRYPGPAFDELDDVEIAPLDALGRARADVEGLVVANEPVPFDLL
Ga0173482_1058611913300019361SoilMLAGVKVFATRRYPGPAFDELDDVEVAPLETLEASRDDLQGL
Ga0210382_1003239513300021080Groundwater SedimentLKVLATRRYPGPAFDELADVEVQALAELDSPRPDVEALVVANEPVPLALLP
Ga0182009_1058527823300021445SoilLTVLATRRYPGPAFGELGDVEIGPLQPRDDVDVLVVANEPI
Ga0222622_1017668023300022756Groundwater SedimentMRVLATRRYPGPAFDELDDVEVTPLAALRKPREDVEGLILANEPV
Ga0209642_1040574313300025167SoilVKILSTRRFPGPAFDELDDVEVRRLTDLHEPRADVEALAVANEPIPLEL
Ga0210076_102718813300025567Natural And Restored WetlandsVRVLSTRRYPGPAFDELADVVVAALDALREPDPGIEALIVANEPVPLGLLPAL
Ga0210076_104614613300025567Natural And Restored WetlandsVKVLATRRYPGPALDELSDLEIATLASLEGPRPDVEGLVVANEPPP
Ga0207684_1048605213300025910Corn, Switchgrass And Miscanthus RhizosphereLKVLATRRYPGPAFEELTDVAIGPLAADPDVAALIVANE
Ga0207711_1165820123300025941Switchgrass RhizosphereMLAGVKVFATRRYPGPAFDELDDVEVAPLVELDAPRDDVE
Ga0207712_1005232013300025961Switchgrass RhizosphereMLAGVKVFATRRYPGPAFDELDEVEVAPLAQLDAPR
Ga0207677_1003752613300026023Miscanthus RhizosphereVRVKILATRRYPGPAFEELAEVEVAPLASVTEPREHL
Ga0208144_101779313300026040Natural And Restored WetlandsMKVLATRRYPGPAFDELDDVEVAALESLTDSRPGIEALVAGNETV
Ga0208654_103476013300026062Natural And Restored WetlandsVKVLATRRYPGPALDELGEVEVLPLHAITQPRPDVEALVV
Ga0209154_124067813300026317SoilLKVLATRRYPGAAFDELGDVEIGALEAHDDVEALIVANEPVSADLFPAL
Ga0209152_1014442023300026325SoilLKVLATRRYPGPAFEELRDVEVAPLEPRDDVEVLIVANEPVT
Ga0209161_1013142333300026548SoilLKVLATRRYPGPAFDELRDVEVAPLEARDDVEALI
Ga0209474_1042616613300026550SoilLKVLATRRYPGPAFEELDDVEVGPLSDLRAPRPEVEALVV
Ga0209897_103847123300027169Groundwater SandVKILATRRYPGSAFDELDDVEVSSLAALDALRPDVEGLVVSNEPVPLELLPRLRVV
Ga0209887_101742133300027561Groundwater SandLKVLATRRYPGPAFEELEDVEVQPLSELRSPRPEVEALAVANEP
Ga0209177_1021005313300027775Agricultural SoilMKILATRRYPGPAFDELAPEIVPLADLREPRGDVEGLIVANEPVPLDLLPA
Ga0209857_106861313300027957Groundwater SandVKILATRRYPGSAFDELDDVEVSSLAALDALRPDVEGLVVSNE
Ga0247822_1008001033300028592SoilVRILATRRLPGPAFDELGTVEVGALSEVREPRPDVEA
Ga0307309_1001777813300028714SoilLKVLATRRYPGPAFDELGDVEVRALAELQSARPDVEALLVANEP
Ga0307311_1022728923300028716SoilVKILATRRYPGPALEELDEVEVAPLASLTEPREDIEGLLAANEPVPLDCLPRLRV
Ga0307301_1030042713300028719SoilVKVVATRRYPGPAFCELDDVEVVSLDALGRTRADVE
Ga0307318_1014233833300028744SoilMKVVATRRYPGPAFDELDDVEVTPLDALGPAREDVE
Ga0307318_1029607013300028744SoilLKVLATHRYPGPAFDELGDVEVRALAELEGPRPEVEALVVANEPVPLELLPE
Ga0307282_1011600513300028784SoilMLAAAVKVLATRRYPGPAFDELDVDVLPLDRLDAPREDVEGLIVANEPVALDLLP
Ga0307323_1027404013300028787SoilLKVLATRRYPGPAFEELGDVEVAPLAARADVETLIVANEPVDAALFPSLRLV
Ga0307287_1028377013300028796SoilVKVVATRRYPGPPFDELDDVEIAPLDALGRARADVE
Ga0307305_1010334933300028807SoilMKVVATRRYPGPAFDELDDVEVTPLDALGPAREDVEGLVVAN
Ga0307292_1023672923300028811SoilMKVVATRRYPGPAFDELDDVEVTPLDALGPAREDVEGLV
Ga0307292_1042145813300028811SoilMRVLATRRYPGSAFDELEDVEVTPLDALREPREDVEGLILANEPV
Ga0307286_1011812533300028876SoilMRVLATRRYPGSAFDELEDVEVTPLDALREPREDVEGLILANEPVPL
Ga0307308_1008273433300028884SoilLKVLATHRYPGPAFDELGHVEVQALAELETPRPDVEALAVANEPVP
Ga0307304_1025707613300028885SoilLKVLATHRYPGPAFDELGEVEVQALADMKSPRPEVEALVVANE
Ga0307497_1016344633300031226SoilLKVLATRRYPGPAFDELGDVEVRALRELESARPDVEALLVA
Ga0310904_1109835513300031854SoilVQVLATRRYPGPAFDELANVEIVALPSLDAPRPGIEGLVVANEPPPLDLLPGL
Ga0308176_1012127213300031996SoilVKVLATRRYPGPAFDELDEVEVSALADLTQPRVDVE
Ga0310906_1003749113300032013SoilVQVLATRRYPGPAFDELANVEIVVLPSLDAPRPGIEGLVVANEPPP


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