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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F097540 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 104 |
| Average Sequence Length | 51 residues |
| Representative Sequence | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNAKK |
| Number of Associated Samples | 91 |
| Number of Associated Scaffolds | 104 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.81 % |
| % of genes from short scaffolds (< 2000 bps) | 3.85 % |
| Associated GOLD sequencing projects | 87 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.47 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (95.192 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.231 % of family members) |
| Environment Ontology (ENVO) | Unclassified (35.577 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (41.346 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
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| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 52.05% β-sheet: 0.00% Coil/Unstructured: 47.95% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 104 Family Scaffolds |
|---|---|---|
| PF01293 | PEPCK_ATP | 21.15 |
| PF00210 | Ferritin | 5.77 |
| PF00353 | HemolysinCabind | 4.81 |
| PF03704 | BTAD | 3.85 |
| PF00486 | Trans_reg_C | 1.92 |
| PF00082 | Peptidase_S8 | 1.92 |
| PF13191 | AAA_16 | 0.96 |
| PF07730 | HisKA_3 | 0.96 |
| PF12769 | PNTB_4TM | 0.96 |
| PF03160 | Calx-beta | 0.96 |
| PF00923 | TAL_FSA | 0.96 |
| PF02558 | ApbA | 0.96 |
| PF13485 | Peptidase_MA_2 | 0.96 |
| PF13425 | O-antigen_lig | 0.96 |
| PF03061 | 4HBT | 0.96 |
| COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
|---|---|---|---|
| COG1866 | Phosphoenolpyruvate carboxykinase, ATP-dependent | Energy production and conversion [C] | 21.15 |
| COG3629 | DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain | Transcription [K] | 3.85 |
| COG3947 | Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains | Transcription [K] | 3.85 |
| COG0176 | Transaldolase/fructose-6-phosphate aldolase | Carbohydrate transport and metabolism [G] | 0.96 |
| COG3850 | Signal transduction histidine kinase NarQ, nitrate/nitrite-specific | Signal transduction mechanisms [T] | 0.96 |
| COG3851 | Signal transduction histidine kinase UhpB, glucose-6-phosphate specific | Signal transduction mechanisms [T] | 0.96 |
| COG4564 | Signal transduction histidine kinase | Signal transduction mechanisms [T] | 0.96 |
| COG4585 | Signal transduction histidine kinase ComP | Signal transduction mechanisms [T] | 0.96 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 95.19 % |
| All Organisms | root | All Organisms | 4.81 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2032320006|FACEOR_FYWIORV02IRJ96 | All Organisms → cellular organisms → Bacteria | 509 | Open in IMG/M |
| 3300005340|Ga0070689_100063379 | All Organisms → cellular organisms → Bacteria | 2877 | Open in IMG/M |
| 3300005343|Ga0070687_100789022 | All Organisms → cellular organisms → Bacteria | 672 | Open in IMG/M |
| 3300012900|Ga0157292_10227650 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 637 | Open in IMG/M |
| 3300015077|Ga0173483_10543085 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 628 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 19.23% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 10.58% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.77% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 5.77% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 4.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.85% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.85% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.85% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.88% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 2.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.88% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.92% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.92% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 1.92% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 1.92% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.96% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 0.96% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.96% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.96% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.96% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.96% |
| Groundwater Sand | Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand | 0.96% |
| Speleothem And Rock Wall Surfaces | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.96% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2032320006 | Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ | Environmental | Open in IMG/M |
| 2209111007 | Cave microbial community (Dry rock wall) | Environmental | Open in IMG/M |
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004024 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 | Environmental | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
| 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
| 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
| 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
| 3300006581 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006792 | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D | Environmental | Open in IMG/M |
| 3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
| 3300006846 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 | Host-Associated | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
| 3300009087 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009818 | Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
| 3300012899 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2 | Environmental | Open in IMG/M |
| 3300012900 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1 | Environmental | Open in IMG/M |
| 3300012904 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1 | Environmental | Open in IMG/M |
| 3300012908 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1 | Environmental | Open in IMG/M |
| 3300012912 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2 | Environmental | Open in IMG/M |
| 3300012915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014268 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 | Environmental | Open in IMG/M |
| 3300015077 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300017965 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T | Environmental | Open in IMG/M |
| 3300018072 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2 | Environmental | Open in IMG/M |
| 3300018074 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2 | Environmental | Open in IMG/M |
| 3300018078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex | Environmental | Open in IMG/M |
| 3300018082 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
| 3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
| 3300022898 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5 | Environmental | Open in IMG/M |
| 3300023064 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6 | Environmental | Open in IMG/M |
| 3300023069 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5 | Environmental | Open in IMG/M |
| 3300023102 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5 | Environmental | Open in IMG/M |
| 3300025155 | Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4 | Environmental | Open in IMG/M |
| 3300025313 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes) | Environmental | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027560 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes) | Environmental | Open in IMG/M |
| 3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027992 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5 | Environmental | Open in IMG/M |
| 3300028587 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3 | Environmental | Open in IMG/M |
| 3300028589 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1 | Environmental | Open in IMG/M |
| 3300028592 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 | Environmental | Open in IMG/M |
| 3300028771 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369 | Environmental | Open in IMG/M |
| 3300028812 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300030336 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1 | Environmental | Open in IMG/M |
| 3300030606 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 | Environmental | Open in IMG/M |
| 3300031913 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4 | Environmental | Open in IMG/M |
| 3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032516 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0 | Environmental | Open in IMG/M |
| 3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
| 3300033551 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5 | Environmental | Open in IMG/M |
| 3300034147 | Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17 | Environmental | Open in IMG/M |
| 3300034177 | Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17 | Environmental | Open in IMG/M |
| 3300034354 | Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FACEORE_1391080 | 2032320006 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRSLVSDNSKKLNGFTANQIASASVAVALKES |
| 2214570995 | 2209111007 | Speleothem And Rock Wall Surfaces | MNVRRMKRPSPALVVAMAALLFALGGTAGAVVTQAVPLAKRALVADN |
| INPhiseqgaiiFebDRAFT_1007293723 | 3300000364 | Soil | MNVRRMRRPSPAFVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQTASQITAKA |
| JGI1027J12803_1008658562 | 3300000955 | Soil | MKAMHSRRPSVALVVALLALFVALGGTAGAVVTAVVPLAKRALVADNAKKLNGLTAK |
| JGI10216J12902_1062862383 | 3300000956 | Soil | MDVRRIKRPSPAFFVAMVALFVALGGTAGAVVTAAVPLAKRAIVADNAK |
| JGI10216J12902_1183918521 | 3300000956 | Soil | MKGRISPALVVSIIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGKTAA |
| Ga0055436_101403372 | 3300004024 | Natural And Restored Wetlands | MEALKNRRPNAALVVAMVALFVALGGTAGAVVTAAVPLAKRALVADNANKLQGK |
| Ga0062592_1015609832 | 3300004480 | Soil | MNGYKVRRPSPALVVATVALFVALGGTAGAVVTQAVPLAK |
| Ga0070680_1010961212 | 3300005336 | Corn Rhizosphere | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALV |
| Ga0070682_1009133371 | 3300005337 | Corn Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGG |
| Ga0070689_1000633791 | 3300005340 | Switchgrass Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASASVAVALKESPPGARP |
| Ga0070691_108740512 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGG |
| Ga0070687_1007890222 | 3300005343 | Switchgrass Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRSLVSDNSKKLNGFTANQIASASVAVALK |
| Ga0070669_1014640761 | 3300005353 | Switchgrass Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNAKKLNGF |
| Ga0070669_1019833941 | 3300005353 | Switchgrass Rhizosphere | MNERSSKRSTAALVVAMLSLFVALSGTAGAVVSAAVPLAKRALVADNAKKVG |
| Ga0070675_1009814952 | 3300005354 | Miscanthus Rhizosphere | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAK |
| Ga0070705_1009326322 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKK |
| Ga0070695_1013072742 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDN |
| Ga0068854_1014569181 | 3300005578 | Corn Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQTS |
| Ga0070702_1000155871 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQTSSQI |
| Ga0068870_100152314 | 3300005840 | Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALV |
| Ga0066652_1008746892 | 3300006046 | Soil | MRRFSYPSPALVVALVALFVALSGTALAVGSAVVPLAKRALVADNAKKLNGQTPVALLAQ |
| Ga0066652_1012955691 | 3300006046 | Soil | MNVRMRRPSAGFVVAMIALFIALGGTAGAVVSAAVPLAKHALVADNAKKLGGKTPAQVVA |
| Ga0097621_1016261552 | 3300006237 | Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGGQTAAQ |
| Ga0074048_123677221 | 3300006581 | Soil | LNGPRSRRPSPAFVIAMIALFVALGGTAGAVVTAAVPLAKRAIVADNAKKLNGVTASQLGGAAV |
| Ga0075530_12470002 | 3300006792 | Arctic Peat Soil | MDRRHFKRPSPALVVATVALFVALGGTAGAVVTAAVPLAKRALVADN |
| Ga0075421_1022981512 | 3300006845 | Populus Rhizosphere | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQ |
| Ga0075430_1010086731 | 3300006846 | Populus Rhizosphere | MWRMLRRPSPAMVVALIALFVALGGTATAVTVAVVPLAERANVADNALRLR |
| Ga0075420_1017852352 | 3300006853 | Populus Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSD |
| Ga0068865_1000906392 | 3300006881 | Miscanthus Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIA |
| Ga0105107_113408942 | 3300009087 | Freshwater Sediment | MQAPWIKRLSPALIVAMIALFVALGGTAGASSQAPVPLAKRALVADNAKKLGGLSAAQVA |
| Ga0105245_105224051 | 3300009098 | Miscanthus Rhizosphere | VRHQELWEGRNGVQRFSHSSPALVVALVALFVALSGTAFAVGSAVVPLAKRALVADNAKKLNG |
| Ga0114129_115590132 | 3300009147 | Populus Rhizosphere | MLASRFKRPTPAFVIAMLALFVALGGTAGAVATATVPLAKRALVADNAKKLNGVTAGQLGGAAVQLALK |
| Ga0111538_101884253 | 3300009156 | Populus Rhizosphere | MDAPWIRRRLQRPTPAFVIAMIALFVALGGTAGAVATATVPLAKRALVADKAKTALIAEN |
| Ga0105072_11331062 | 3300009818 | Groundwater Sand | VKTLKGFGMNLRMKRPSPALVVATVALFVALGGTAGAVVNAAVPLAKRALV |
| Ga0126383_120922051 | 3300010398 | Tropical Forest Soil | MNVWKKRPSVAFVVAMLALFVALGGTAGAVVTAAVPLAKRALV |
| Ga0126383_121530202 | 3300010398 | Tropical Forest Soil | MSVRFKRPSPAFVVATIALFVALGGTAGAVAVVPLAKRALVADNAKKLGGFTP |
| Ga0137377_112136551 | 3300012211 | Vadose Zone Soil | MVVAVAALFVALSGTAWAVGNAIVPLASRALNADNAKKLGGKTAAQVAAMPG |
| Ga0137369_107080451 | 3300012355 | Vadose Zone Soil | MKGRLSPALVISLIALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGGFTARQIATAGA |
| Ga0157299_100564091 | 3300012899 | Soil | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAK |
| Ga0157292_102276501 | 3300012900 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASASVAVALKESPPG |
| Ga0157282_100652072 | 3300012904 | Soil | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGGVTAAQLG |
| Ga0157282_100974252 | 3300012904 | Soil | MPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADNAKKVGGQT |
| Ga0157286_100457542 | 3300012908 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSD |
| Ga0157306_101385011 | 3300012912 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKK |
| Ga0157306_104145171 | 3300012912 | Soil | MEGKLMKRPSPALVVAMVALFVTLGGTAGAVVTAAVPLAKRALVSDNSKRLNG |
| Ga0157302_101478142 | 3300012915 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASA |
| Ga0164302_105026091 | 3300012961 | Soil | MPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADTAKKLGGQTP |
| Ga0126369_114393231 | 3300012971 | Tropical Forest Soil | MSVRFKKPSPAFVVATVALFVALGGTAGAVAAVVPLAKRALVADNAKKLGG |
| Ga0126369_126383192 | 3300012971 | Tropical Forest Soil | MNVFRKRPSAALVVATLALFVALGGTAGAVVSSAVPLAKRALVADNARK |
| Ga0157369_123859171 | 3300013105 | Corn Rhizosphere | VKRSKEGNMNGRRMPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADNAKKVGGQT |
| Ga0157374_107292362 | 3300013296 | Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALIADNAKKLGGQTSSQIVS |
| Ga0075309_10465081 | 3300014268 | Natural And Restored Wetlands | MFASRFKRPTPAFLIAMLALFVALGGTAGAVATATVPLAKRALVAENAK |
| Ga0173483_105202502 | 3300015077 | Soil | MNERSSKRSTAALVVAMVSVFVALSGTAGAVVSAAVPLAKRALVADNA |
| Ga0173483_105430851 | 3300015077 | Soil | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASASVAVALK |
| Ga0132258_131168041 | 3300015371 | Arabidopsis Rhizosphere | MRKPTPTFVVAVLALFISLVGTADAVVNAAVPLAKRALV |
| Ga0132256_1013275632 | 3300015372 | Arabidopsis Rhizosphere | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLA |
| Ga0132257_1036782862 | 3300015373 | Arabidopsis Rhizosphere | MNERSSKRSTAALVVAMLSLFVALSGTAGAVVSAAVPLAKRALVADNAKKVGGQT |
| Ga0182040_117860792 | 3300016387 | Soil | MNLRMKRPSVGFVVAMLALFVALGGTAGAVVTAAVPLAKRALVADNAKKVGGLTATQLGA |
| Ga0190266_100218511 | 3300017965 | Soil | MNARLKRPTPAFVVALVALFFALGGTAGAIATQAVPLA |
| Ga0184635_100081181 | 3300018072 | Groundwater Sediment | MNALRMKRPSPRFVVSMVALFVALGGTAGAVATQAVPLAKRALVADNAK |
| Ga0184640_101978001 | 3300018074 | Groundwater Sediment | MNVRRMRRPSPALVVAMVALLFALGGTAGAVVSAAVPLAKRALVADNAKKLGGQT |
| Ga0184640_103282611 | 3300018074 | Groundwater Sediment | MNVRRMKRPSPALVVAMAALLFALGGTAGAVVTAAVPLAKRAL |
| Ga0184612_104217092 | 3300018078 | Groundwater Sediment | MNVGKMKRPSPALAVAMIALFVALGGTAGAVVAQAVPL |
| Ga0184639_100883211 | 3300018082 | Groundwater Sediment | MNVRRMKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALTADN |
| Ga0190270_134025401 | 3300018469 | Soil | MNGLKLRRPSPALVVATIALFVALGGSAGAVVTAAVPLAKRALVADNAKKVGG |
| Ga0173481_100179291 | 3300019356 | Soil | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNA |
| Ga0173481_101841282 | 3300019356 | Soil | MNERRMPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADNAKKVGGQTPAQLTA |
| Ga0173481_102109322 | 3300019356 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRAL |
| Ga0173479_101001881 | 3300019362 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNA |
| Ga0247745_10820941 | 3300022898 | Soil | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPL |
| Ga0247801_10503221 | 3300023064 | Soil | MNGRRMPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADNAKKVGGQTPAQIAT |
| Ga0247751_10306842 | 3300023069 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASA |
| Ga0247754_11221851 | 3300023102 | Soil | MNGLKMRRPAPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKL |
| Ga0209320_102787831 | 3300025155 | Soil | MKGQTMRRPTPALVVAMVALFVALGGTAGAVVTAAVPFAK |
| Ga0209431_103437622 | 3300025313 | Soil | MNALRMKRPSPAFVVAMVALFVGLGGTAGAVATQAVPLAKRALVADNAKKLSGQTP |
| Ga0209431_107601772 | 3300025313 | Soil | MNGWKAKRPSPALVVATVALFVALGGTAGAVASQAVPLAKRAL |
| Ga0207660_107389203 | 3300025917 | Corn Rhizosphere | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVA |
| Ga0207687_117597391 | 3300025927 | Miscanthus Rhizosphere | VQRFSHSSPALVVALVALFVALSGTAFAVGSAVVPLAKRALTADNAKKLNGQTPLALLAQAAKQPGP |
| Ga0207701_113977032 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASASVA |
| Ga0207690_106407631 | 3300025932 | Corn Rhizosphere | MEGKLMKRPSPALVVAMVALFVALGGTAGAVVTAAV |
| Ga0207686_103485631 | 3300025934 | Miscanthus Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLG |
| Ga0207675_1000956073 | 3300026118 | Switchgrass Rhizosphere | MTVLKKRPSGALVVAMIALFVALGGTAGAVVTAAV |
| Ga0207981_10375421 | 3300027560 | Soil | MNARRSRRPSPAFVIAMIALFVAFGGTAGAVVTATVPLAKRALMADNAKKVGGQ |
| Ga0209382_118300452 | 3300027909 | Populus Rhizosphere | MRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQTAAQI |
| Ga0247750_10297902 | 3300027992 | Soil | MNGRRMPSPALVIAVAALFVSLGGTAVAAGVVPLAKRALVADNAKKVGGQTPAQI |
| Ga0247828_109256362 | 3300028587 | Soil | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRALVADNAKKLGGQTAAQ |
| Ga0247818_105166931 | 3300028589 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRA |
| Ga0247822_105860802 | 3300028592 | Soil | MHAPWIKRVSPALVVAMIGLFVALGGTAGASGQAPVPLAKRALVADNAKKVGGL |
| Ga0307320_104312632 | 3300028771 | Soil | MRKPTPELVIAVLALFVALAGTANAVVDGAVPLARRALVAENAKKL |
| Ga0247825_106754552 | 3300028812 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNSKKLNGFTANQIASAAVQVAVKE |
| Ga0307302_104684552 | 3300028814 | Soil | MDIRRMKRPSPAFVVGMVALFVALGGTAGAVVAQAVPLAKRALVADN |
| Ga0247826_114735051 | 3300030336 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSENSKKLNGFTANQ |
| Ga0299906_104502071 | 3300030606 | Soil | VNVWKIRRPSPAFVVALVALFVALGGTAGAVVSQAVPLAKRA |
| Ga0310891_102870511 | 3300031913 | Soil | MKRPSPALVVAMVALFVALGGTAGAVVTAAVPLAKRALVSDNAKK |
| Ga0310885_107770461 | 3300031943 | Soil | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVP |
| Ga0310890_101838463 | 3300032075 | Soil | MNGLKMRRPTPALVIAMIALFVALGGTAGAVVTAAVPLAKRAL |
| Ga0315273_114917152 | 3300032516 | Sediment | MNRRMKRPSPAFVVAMVALFVALGGTAGAVVTAAVPLAKRAL |
| Ga0247829_101197123 | 3300033550 | Soil | MNGLKMRRPSPALVVATIALFVALGGSAGAVVAAAVPLAQRALVADN |
| Ga0247829_102985361 | 3300033550 | Soil | MNALRMKRPSPAFVVAMIALFVALGGTAGATNRAI |
| Ga0247830_103943781 | 3300033551 | Soil | MNAYWTKRPSPALVVALIALFVGLGGTANAVVGAAVPLAKRAL |
| Ga0364925_0006294_1_135 | 3300034147 | Sediment | MNVKRIRRPSTALIVSMVALFVALGGTAGAVVTAAVPLAKRALVA |
| Ga0364932_0117410_876_1010 | 3300034177 | Sediment | MIKRPSPAFVVAMVALFVALGGTAGAVVNAAVPLAKRALVADNAK |
| Ga0364943_0433548_334_510 | 3300034354 | Sediment | MNVRRLRRPSPALVVAMAALLFALGGTAGAVVTAAVPLAKRALTADNAKRLGGKSATQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |