2084038000: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664

Overview

Basic Information

• IMG/M Taxon OID: 2084038000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046183 | Gp0051756 | Ga0026272
• Sample Name: Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153674931
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	14
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium ADurb.Bin168	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctNQV2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen → Bovine Rumen Viral Communities From University Of Illinois Dairy Farm In Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: University of Illinois Dairy Farm in Urbana, IL
• Coordinates
  • Lat. (^o): 40.0886
  • Long. (^o): -88.2202
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F023997	Metagenome / Metatranscriptome	208	Y
F039427	Metagenome / Metatranscriptome	163	Y
F042680	Metagenome / Metatranscriptome	157	Y
F049349	Metagenome / Metatranscriptome	146	Y
F051611	Metagenome	143	Y
F051988	Metagenome / Metatranscriptome	143	Y
F062320	Metagenome / Metatranscriptome	130	Y
F065312	Metagenome / Metatranscriptome	127	Y
F079361	Metagenome / Metatranscriptome	116	Y
F087968	Metagenome / Metatranscriptome	110	Y
F094633	Metagenome	105	Y
F097585	Metagenome / Metatranscriptome	104	Y
F100165	Metagenome / Metatranscriptome	102	N
F102285	Metagenome / Metatranscriptome	101	Y
F104182	Metagenome	100	Y
F104183	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
BRPC2_contig00358	Not Available	2074
BRPC2_contig01594	Not Available	1084
BRPC2_contig01971	Not Available	988
BRPC2_contig01986	Not Available	975
BRPC2_contig08309	Not Available	508
BRPC2_GFP31SK02FUN3K	Not Available	501
BRPC2_GFP31SK02GQM4O	Not Available	539
BRPC2_GFP31SK02GUOGX	Not Available	506
BRPC2_GFP31SK02H5MSJ	Not Available	527
BRPC2_GFP31SK02HGJEQ	Not Available	509
BRPC2_GFP31SK02HJ0X5	Not Available	544
BRPC2_GFP31SK02I15EU	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.	501
BRPC2_GFP31SK02I449O	Not Available	509
BRPC2_GFP31SK02IAS4L	Not Available	502
BRPC2_GFP31SK02ICNWO	Not Available	520
BRPC2_GFP31SK02IUHBD	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	508
BRPC2_GFP31SK02J2GWU	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium ADurb.Bin168	513
BRPC2_GFP31SK02JV7FI	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctNQV2	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
BRPC2_contig00358	BRPC2_02558010	F012184	MNKTEILNTILSLPGATMARQSKTNFVVIPAEDGIVKVAVGGVQATDTKAHKAFNLEAAVAEYKAWEAEKALKAAEAASKPVKVKGPNPEAQARRDELDAKLSALPTFTDYTATDILNALAGQVAENVTVMAVGSSAMRLVNQGVLTVSMDEKKKKHYSKA
BRPC2_contig01594	BRPC2_04392760	F051611	MVKDKVTKDDLQKFNVGDQKVFTLPNYGKARSAQSYANQLKKATAGTDNPMEFKAIIGDPVPGSGQCSVTITRIA
BRPC2_contig01971	BRPC2_03678620	F023997	MITLKNWYQQQPEVVYLFRQIIKGDEFMKKLVRSEMSKQQWDKMVDGYSGCEIYKVIIENHSGKLHSWVYFKEGE
BRPC2_contig01986	BRPC2_03820390	F104183	MKQEEFEAKAKSASKEMLKKKAPTRPETQFVKGAMWAWELLMTGRTVAEYEQQLRQDVCARFNIEEPERWQELLISETATMMADRDGMQQDILTEGRLLEKFDKNMNPYKESNPLYVHLKELQRSIGMQREHLGLTNKSSKKMESPKTHDVKDDPLGEYFEGIR
BRPC2_contig08309	BRPC2_02079960	F023997	MITLKNWYKQQPEVVYFVQTDFQGDEFMKKLVRSKTPKEQWDKTVDRYSDREIYKVITENIDGKLHSWVYFREGE
BRPC2_GFP31SK02FUN3K	BRPC2_04271230	F051988	TINRKLVTTLEEGYSGDVMEDLDLSKAAMIGQFYDFRSRIDLFDSYLIDVESALAQKAVKGVTTTAYVAGFRASTQFARATAIGKWKRNTEMSYINDLMGWYDGIPVLRSTDIVEGEGEATFYAIHKTPDGQMAPLARGIFMPLTDTPTIGNYNNPTQMAAGVYYQE
BRPC2_GFP31SK02FWXTS	BRPC2_01755900	F104182	MYYFVTELQTRPDGIINSTITTRSSFALGLNLYLTRAAAAVVTTDFTSVALTLQNQDGEIVKNEKFDTQYVAPTEE
BRPC2_GFP31SK02GGAWV	BRPC2_00618900	F104182	MYYFITELQTRPDGIVNSTITTRSSLAMGLAYYYQRAAVAVATTDFTSVALTLQNQDGDIVENRRFDTLYEEA
BRPC2_GFP31SK02GMUYQ	BRPC2_00117670	F102285	MKIIANKDFIYKGVNYIKGDELTNLKYEEIAKLNEKGFIEPLDYKSLVLIKRELEHKKNKKEE
BRPC2_GFP31SK02GQM4O	BRPC2_03735530	F079361	MIYFTIAKNECGYLIDSISECYEVLKAKFPDEKIYKSDTPIVSIYVIKDELNEI
BRPC2_GFP31SK02GUOGX	BRPC2_03779170	F012184	LKGVKMTNVEILNTILSIPGASMARQNKTNFVVIPSDDGFVKVAVTNALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAEKATKPVKVKGPNPDAQARRDELDAVIGAMPSFTDCTATDIMNAIEGKVAFTLTPMNVGQSAKRLVEKGVLVATTKDGDKKSYYTKA
BRPC2_GFP31SK02H5MSJ	BRPC2_02694700	F087968	LYTCPKGTEREERNMIKVTKTHARTLYNAGKEIMIIPNKMRTDSFMASWTTKPANDPDADFDKLCNAISYYNCSPETGLSLAYYVKAL
BRPC2_GFP31SK02HGJEQ	BRPC2_03125020	F023997	VITLKNWYQQQPEVVYFVQTNFQGDEFMKKLVRSEMSKETWDKTVDRYSDCEIYKVITENIDGKLHSCVYFKEGE
BRPC2_GFP31SK02HJ0X5	BRPC2_00195520	F065312	MSKKKNSKPKTWIEVFQSERKEFPQGYCVTRIIPDKRNKKPKHKGKEFEE
BRPC2_GFP31SK02I15EU	BRPC2_03118640	F049349	MDEFGCFYCWDARKKKEKEYLWFFDAANNLKQCEYCPKCGRKYGEEPVNEPLELADEQQY
BRPC2_GFP31SK02I449O	BRPC2_01030220	F062320	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLVLLLVC
BRPC2_GFP31SK02IAS4L	BRPC2_02770940	F100165	MEKLTEKKIEKMKVAIYSIHSDYKKLSTDFEKLKNLVTECLQNDSLNRHGTEIFDTIMDIDYHLDRIYVPLNDTYNDIFVRSKK
BRPC2_GFP31SK02ICNWO	BRPC2_03272790	F039427	MSKKTFNLITGIIGAVQAAAVAIVTYTEPSYATAINSAIVIAGTAAIEICNLFVKE
BRPC2_GFP31SK02IUHBD	BRPC2_02435950	F097585	MAKIINIEENTPHKVSEVICIDCKHRWIAVRPTNTLLKDLECPQCWLQGYVIETGEQLKD
BRPC2_GFP31SK02J2GWU	BRPC2_02714440	F094633	DYLPHVDDYVNDGYDRLVKVWTKNHVPQETYPRLEKDEDVPNLPLWTHRALCDWATWLVYRNGNPQKQNRGLYFKQAFDEIVAQIAGEGGSAGLNEDGTQKQYRNFINIPR
BRPC2_GFP31SK02JV7FI	BRPC2_01015350	F042680	IMVVQDIKPLVKGIAQLQSVLAGGIAVYKIVAVDNTEYQLEIDVSNKADVGASASFNATEKALLLMRWIRKANEDGTLIKIKG