Metagenome / Metatranscriptome Family F062320

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062320
Family Type	Metagenome / Metatranscriptome
Number of Sequences	130
Average Sequence Length	43 residues
Representative Sequence	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSLA
Number of Associated Samples	32
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.85 %
% of genes near scaffold ends (potentially truncated)	15.38 %
% of genes from short scaffolds (< 2000 bps)	70.77 %
Associated GOLD sequencing projects	29
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.231 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (75.385 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.83% β-sheet: 0.00% Coil/Unstructured: 54.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF11325	DUF3127	36.92
PF01807	zf-CHC2	2.31
PF09669	Phage_pRha	2.31
PF01381	HTH_3	2.31
PF04404	ERF	1.54
PF03374	ANT	1.54
PF13481	AAA_25	0.77
PF03354	TerL_ATPase	0.77
PF13102	Phage_int_SAM_5	0.77
PF10902	WYL_2	0.77
PF05521	Phage_H_T_join	0.77
PF02954	HTH_8	0.77
PF08797	HIRAN	0.77
PF13443	HTH_26	0.77

COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	2.31
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.77

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
All Organisms	root	All Organisms	30.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Viruses	superkingdom	All Organisms → Viruses	22.31 %
cellular organisms	root	All Organisms → cellular organisms	8.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	3.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
unclassified Prevotella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella	1.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	22.31 %
Prevotella sp. tf2-5	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	1.54 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2077657009\|BRPC3_contig02008	Not Available	886	Open in IMG/M
2077657009\|BRPC3_GDEZLPW01A4EYD	Not Available	504	Open in IMG/M
2077657009\|BRPC3_GDEZLPW01CRWU1	Not Available	506	Open in IMG/M
2084038000\|BRPC2_GFP31SK02I449O	Not Available	509	Open in IMG/M
3300012007\|Ga0120382_1009830	Not Available	3074	Open in IMG/M
3300012007\|Ga0120382_1010638	All Organisms → Viruses → Predicted Viral	2932	Open in IMG/M
3300012016\|Ga0120387_1001214	Not Available	18815	Open in IMG/M
3300012016\|Ga0120387_1037783	All Organisms → Viruses → Predicted Viral	1735	Open in IMG/M
3300012016\|Ga0120387_1156557	Not Available	776	Open in IMG/M
3300012973\|Ga0123351_1216675	Not Available	735	Open in IMG/M
3300012973\|Ga0123351_1280437	Not Available	620	Open in IMG/M
3300012979\|Ga0123348_10082323	All Organisms → Viruses → Predicted Viral	1763	Open in IMG/M
3300012983\|Ga0123349_10080487	Not Available	2238	Open in IMG/M
3300012983\|Ga0123349_10178689	Not Available	1460	Open in IMG/M
3300014043\|Ga0120385_1003282	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6536	Open in IMG/M
3300014043\|Ga0120385_1056008	Not Available	892	Open in IMG/M
3300014826\|Ga0120386_1000188	Not Available	52357	Open in IMG/M
3300021254\|Ga0223824_10230010	Not Available	1651	Open in IMG/M
3300021255\|Ga0223825_10230864	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	9168	Open in IMG/M
3300021255\|Ga0223825_11076262	Not Available	1252	Open in IMG/M
3300021256\|Ga0223826_10000839	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	57417	Open in IMG/M
3300021256\|Ga0223826_10128695	All Organisms → Viruses → Predicted Viral	2264	Open in IMG/M
3300021256\|Ga0223826_10738856	Not Available	730	Open in IMG/M
3300021387\|Ga0223845_11517764	All Organisms → Viruses → Predicted Viral	1361	Open in IMG/M
3300021387\|Ga0223845_12032549	All Organisms → Viruses → Predicted Viral	1242	Open in IMG/M
3300021399\|Ga0224415_10004475	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	15054	Open in IMG/M
3300021399\|Ga0224415_10499002	Not Available	1019	Open in IMG/M
3300021400\|Ga0224422_10216105	Not Available	3306	Open in IMG/M
3300021426\|Ga0224482_10205361	All Organisms → Viruses → Predicted Viral	1739	Open in IMG/M
3300021426\|Ga0224482_11123789	Not Available	531	Open in IMG/M
3300023038\|Ga0233370_1009650	Not Available	972	Open in IMG/M
3300024345\|Ga0255062_10343746	Not Available	719	Open in IMG/M
3300024486\|Ga0255059_10224326	Not Available	868	Open in IMG/M
3300024486\|Ga0255059_10335447	Not Available	704	Open in IMG/M
3300028591\|Ga0247611_10049187	All Organisms → Viruses → Predicted Viral	4295	Open in IMG/M
3300028591\|Ga0247611_10620476	All Organisms → Viruses → Predicted Viral	1151	Open in IMG/M
3300028591\|Ga0247611_10629718	All Organisms → Viruses → Predicted Viral	1141	Open in IMG/M
3300028805\|Ga0247608_10005708	Not Available	13375	Open in IMG/M
3300028805\|Ga0247608_10009135	Not Available	9900	Open in IMG/M
3300028805\|Ga0247608_10143910	Not Available	2295	Open in IMG/M
3300028805\|Ga0247608_10523733	Not Available	1163	Open in IMG/M
3300028805\|Ga0247608_10747335	Not Available	936	Open in IMG/M
3300028805\|Ga0247608_10930272	Not Available	813	Open in IMG/M
3300028805\|Ga0247608_11667789	Not Available	543	Open in IMG/M
3300028833\|Ga0247610_10003936	All Organisms → cellular organisms → Bacteria	16027	Open in IMG/M
3300028833\|Ga0247610_10165683	Not Available	2255	Open in IMG/M
3300028833\|Ga0247610_10434044	Not Available	1376	Open in IMG/M
3300028833\|Ga0247610_10500414	Not Available	1272	Open in IMG/M
3300028833\|Ga0247610_11793292	Not Available	574	Open in IMG/M
3300028833\|Ga0247610_11849787	Not Available	561	Open in IMG/M
3300028886\|Ga0256407_10008571	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	14931	Open in IMG/M
3300028888\|Ga0247609_10008066	Not Available	9942	Open in IMG/M
3300028888\|Ga0247609_10955917	Not Available	885	Open in IMG/M
3300028888\|Ga0247609_11164639	Not Available	781	Open in IMG/M
3300029227\|Ga0168687_101330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	18218	Open in IMG/M
3300031760\|Ga0326513_10021842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	4713	Open in IMG/M
3300031760\|Ga0326513_10091231	All Organisms → Viruses → Predicted Viral	2477	Open in IMG/M
3300031760\|Ga0326513_10196723	Not Available	1742	Open in IMG/M
3300031760\|Ga0326513_10208779	All Organisms → Viruses → Predicted Viral	1694	Open in IMG/M
3300031760\|Ga0326513_10304830	All Organisms → Viruses → Predicted Viral	1410	Open in IMG/M
3300031760\|Ga0326513_10347289	Not Available	1321	Open in IMG/M
3300031760\|Ga0326513_10470892	Not Available	1129	Open in IMG/M
3300031760\|Ga0326513_10548479	All Organisms → Viruses → Predicted Viral	1041	Open in IMG/M
3300031760\|Ga0326513_10593500	Not Available	997	Open in IMG/M
3300031760\|Ga0326513_10597983	Not Available	993	Open in IMG/M
3300031760\|Ga0326513_10728099	Not Available	890	Open in IMG/M
3300031760\|Ga0326513_10758013	Not Available	870	Open in IMG/M
3300031760\|Ga0326513_10820377	Not Available	831	Open in IMG/M
3300031760\|Ga0326513_10828952	Not Available	826	Open in IMG/M
3300031760\|Ga0326513_11113615	Not Available	693	Open in IMG/M
3300031760\|Ga0326513_11133994	Not Available	685	Open in IMG/M
3300031760\|Ga0326513_11478537	Not Available	581	Open in IMG/M
3300031760\|Ga0326513_11479911	Not Available	580	Open in IMG/M
3300031760\|Ga0326513_11576004	Not Available	557	Open in IMG/M
3300031760\|Ga0326513_11834343	Not Available	505	Open in IMG/M
3300031853\|Ga0326514_10000083	All Organisms → cellular organisms → Bacteria	55751	Open in IMG/M
3300031853\|Ga0326514_10042725	All Organisms → Viruses → Predicted Viral	3349	Open in IMG/M
3300031853\|Ga0326514_10089599	Not Available	2436	Open in IMG/M
3300031853\|Ga0326514_10280933	Not Available	1447	Open in IMG/M
3300031853\|Ga0326514_10300095	All Organisms → Viruses → Predicted Viral	1400	Open in IMG/M
3300031853\|Ga0326514_10548490	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300031853\|Ga0326514_10600499	Not Available	975	Open in IMG/M
3300031853\|Ga0326514_10771180	Not Available	846	Open in IMG/M
3300031853\|Ga0326514_10850203	Not Available	798	Open in IMG/M
3300031853\|Ga0326514_10879408	Not Available	782	Open in IMG/M
3300031853\|Ga0326514_11097951	Not Available	683	Open in IMG/M
3300031853\|Ga0326514_11200271	Not Available	646	Open in IMG/M
3300031853\|Ga0326514_11327142	Not Available	606	Open in IMG/M
3300031867\|Ga0326511_10021332	Not Available	5265	Open in IMG/M
3300031867\|Ga0326511_10029242	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → unclassified Prevotella → Prevotella sp. tf2-5	4572	Open in IMG/M
3300031867\|Ga0326511_10031175	Not Available	4441	Open in IMG/M
3300031867\|Ga0326511_10053390	All Organisms → Viruses → Predicted Viral	3485	Open in IMG/M
3300031867\|Ga0326511_10089263	All Organisms → Viruses → Predicted Viral	2768	Open in IMG/M
3300031867\|Ga0326511_10104914	Not Available	2572	Open in IMG/M
3300031867\|Ga0326511_10131325	All Organisms → Viruses → Predicted Viral	2322	Open in IMG/M
3300031867\|Ga0326511_10132477	Not Available	2313	Open in IMG/M
3300031867\|Ga0326511_10168231	Not Available	2069	Open in IMG/M
3300031867\|Ga0326511_10194393	All Organisms → Viruses → Predicted Viral	1935	Open in IMG/M
3300031867\|Ga0326511_10267151	All Organisms → Viruses → Predicted Viral	1662	Open in IMG/M
3300031867\|Ga0326511_10279839	Not Available	1625	Open in IMG/M
3300031867\|Ga0326511_10393476	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
3300031867\|Ga0326511_10552022	Not Available	1147	Open in IMG/M
3300031867\|Ga0326511_10970500	Not Available	830	Open in IMG/M
3300031867\|Ga0326511_11083810	Not Available	776	Open in IMG/M
3300031867\|Ga0326511_11336063	Not Available	680	Open in IMG/M
3300031867\|Ga0326511_11546211	Not Available	619	Open in IMG/M
3300031992\|Ga0310694_10054570	All Organisms → Viruses → Predicted Viral	3821	Open in IMG/M
3300031992\|Ga0310694_10208964	All Organisms → Viruses → Predicted Viral	1983	Open in IMG/M
3300031992\|Ga0310694_10630790	All Organisms → Viruses → Predicted Viral	1086	Open in IMG/M
3300031992\|Ga0310694_11571156	Not Available	597	Open in IMG/M
3300031994\|Ga0310691_10477628	All Organisms → Viruses → Predicted Viral	1377	Open in IMG/M
3300031994\|Ga0310691_10548659	Not Available	1273	Open in IMG/M
3300031994\|Ga0310691_10789603	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300031994\|Ga0310691_10793372	Not Available	1021	Open in IMG/M
3300031994\|Ga0310691_11805123	Not Available	586	Open in IMG/M
3300031994\|Ga0310691_12182730	Not Available	510	Open in IMG/M
3300032030\|Ga0310697_11710858	Not Available	579	Open in IMG/M
3300032038\|Ga0326512_10006389	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	8499	Open in IMG/M
3300032038\|Ga0326512_10013960	Not Available	5859	Open in IMG/M
3300032038\|Ga0326512_10019718	Not Available	4969	Open in IMG/M
3300032038\|Ga0326512_10202919	Not Available	1593	Open in IMG/M
3300032038\|Ga0326512_10456890	All Organisms → Viruses → Predicted Viral	1015	Open in IMG/M
3300032038\|Ga0326512_10540984	Not Available	918	Open in IMG/M
3300032038\|Ga0326512_10737252	Not Available	756	Open in IMG/M
3300032038\|Ga0326512_10786571	Not Available	725	Open in IMG/M
3300032038\|Ga0326512_10890094	Not Available	669	Open in IMG/M
3300032038\|Ga0326512_10925623	Not Available	652	Open in IMG/M
3300032038\|Ga0326512_11016564	Not Available	613	Open in IMG/M
3300032038\|Ga0326512_11048733	Not Available	600	Open in IMG/M
3300032038\|Ga0326512_11289444	Not Available	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	99.23%
Human	Host-Associated → Human	0.77%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	99.23%
Digestive System	Host-Associated → Human → Digestive System	0.77%

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	94.62%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	4.62%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.77%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	94.62%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	4.62%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.77%

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	75.38%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	10.00%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	6.15%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Fecal	3.85%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	3.08%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.77%
Elk Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces	0.77%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2077657009	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993	Host-Associated	Open in IMG/M
2084038000	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664	Host-Associated	Open in IMG/M
3300012007	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1009	Host-Associated	Open in IMG/M
3300012016	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397	Host-Associated	Open in IMG/M
3300012973	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Day 36 Metagenome	Host-Associated	Open in IMG/M
3300012979	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung B1 Day 1 Metagenome	Host-Associated	Open in IMG/M
3300012983	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C2 Day 2 Metagenome	Host-Associated	Open in IMG/M
3300014043	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1248	Host-Associated	Open in IMG/M
3300014826	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1366	Host-Associated	Open in IMG/M
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated	Open in IMG/M
3300021256	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated	Open in IMG/M
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021400	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated	Open in IMG/M
3300021426	Sheep rumen microbial communities from New Zealand - Tag 1435 SPADES assembly	Host-Associated	Open in IMG/M
3300023038	Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D2	Host-Associated	Open in IMG/M
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated	Open in IMG/M
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated	Open in IMG/M
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated	Open in IMG/M
3300029227	Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002670-43	Host-Associated	Open in IMG/M
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated	Open in IMG/M
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated	Open in IMG/M
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated	Open in IMG/M
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated	Open in IMG/M
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated	Open in IMG/M
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BRPC3_02329120	2077657009	Bovine Rumen	MKKFFEIMGKDILSENFTCRDYVVYGIVAPLVLVLVCVLADSLG
BRPC3_00797420	2077657009	Bovine Rumen	EFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLVGSLA
BRPC3_01910560	2077657009	Bovine Rumen	MKEFLEIMGKDIMTENFTRKEYVVYGIVAPLVLVLVCGLVGSLA
BRPC2_01030220	2084038000	Bovine Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLVLLLVC
Ga0120382_10098306	3300012007	Sheep Rumen	MIMKEFLKIMGKDIMSENFTHREYVVYGIVAPLALMLVCGLAGSLA*
Ga0120382_10106383	3300012007	Sheep Rumen	MKEFFNIMAKDIMSENFTRKDYVIYGIIAPMALIAICMLASMVE*
Ga0120387_100121422	3300012016	Sheep Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSLV*
Ga0120387_10377832	3300012016	Sheep Rumen	MKEFLEIMEKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSLS*
Ga0120387_11565572	3300012016	Sheep Rumen	MKELIKVFEKDIKSENFTRKEIIIYGIIAPIALILACGFAEWLSKF*
Ga0123351_12166751	3300012973	Fecal	MKEFLEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLVGSLA*
Ga0123351_12804371	3300012973	Fecal	IMGKDIMSENFTRKKYVVYGIIAPLVLVLVCGLVGSLA*
Ga0123348_100823233	3300012979	Fecal	MKEFLEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLAGCLE*
Ga0123349_100804874	3300012983	Fecal	MIMKEFMEIMGKDIMSENFTRKELVVYGIVAPLVLVLMCGLAGSL*
Ga0123349_101786892	3300012983	Fecal	MIMKEFLEIMGKDIMSENFTRKEYVVYGIVAPVVLVLVCGLAGSLA*
Ga0120385_10032829	3300014043	Sheep Rumen	MKEFLEIMEKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSLA*
Ga0120385_10560084	3300014043	Sheep Rumen	MKEFLEIMGKDILSENFSKKEYVVYGIVAPVVLVIVLGMAGSLA*
Ga0120386_100018836	3300014826	Sheep Rumen	MKKFFEIMGKDILSENFTRREYVVYGIVAPLVLVLVCVLADSLG*
Ga0223824_102300102	3300021254	Cattle And Sheep Rumen	MKEFLEIMGKDIMNENFTRREYVVYGIVAPLVLVLVCGLAGSLA
Ga0223825_102308644	3300021255	Cattle And Sheep Rumen	MKEFFEIMGKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSL
Ga0223825_110762622	3300021255	Cattle And Sheep Rumen	MKEFLKIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLAGSLA
Ga0223826_1000083951	3300021256	Cattle And Sheep Rumen	MKELFEIFEKDIKSENFTRKEIVIYGIIAPLALILVCGFAEWLSNQF
Ga0223826_101286952	3300021256	Cattle And Sheep Rumen	MKEFLKIMGKDIMSENFTRKELVVYGIVAPLVLVMMCGLAGSLV
Ga0223826_107388562	3300021256	Cattle And Sheep Rumen	MKEFFEIMGKDIMNENFTRKELVVYGIVAPLVLVLVCGLAGSLV
Ga0223845_115177642	3300021387	Cattle And Sheep Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVIAGGMAGSLA
Ga0223845_120325492	3300021387	Cattle And Sheep Rumen	MKEFLKIMGKDIMSENFTRKELVVYGIVVPLVLVLVCGLADSLV
Ga0224415_1000447518	3300021399	Cattle And Sheep Rumen	MGKDIMNENFTRKEFVVYGIVVPLVLVLVCGLADSLV
Ga0224415_104990021	3300021399	Cattle And Sheep Rumen	MKEFLKIMGKDIMSENFTRREYVIYGIVAPLVLVLVCGLAGSLA
Ga0224422_102161056	3300021400	Cattle And Sheep Rumen	MKEFLKIMGKDIMKDNFTKNEYLVYGIVAPLVLVLVCGLAGSLA
Ga0224482_102053615	3300021426	Cattle And Sheep Rumen	MKELFEIFEKDIMSENFTRKEIVIYGIIAPLALILVCELAEWLSKQF
Ga0224482_111237891	3300021426	Cattle And Sheep Rumen	MKEFLKIMGKDIMSENFTRKEIVVYGIVVPLVLVLVCGLAGSLV
Ga0233370_10096502	3300023038	Elk Feces	MKEFLEIMGKDIMSENFTRKKYVVYGIIAPLVLVLVCGLVGSLA
Ga0255062_103437461	3300024345	Rumen	MKEFLEIMVKDILSENFTKKEYVVYGIVAPLVLVLLCGLAESLA
Ga0255059_102243262	3300024486	Rumen	MKEFLKIMEKDILSENFTKKEYVVYGIVAPLVMVLLCGLAGSLG
Ga0255059_103354472	3300024486	Rumen	IMKEFLEIMGKDIMSENFTRREYVIYGIVAPLVLVLLSGLAESLA
Ga0247611_100491871	3300028591	Rumen	MKDFLNIMGKDILSENFTKKEYVVYGIVAPLVLVLVCGIVGSLA
Ga0247611_106204763	3300028591	Rumen	MKEFLEIMGKDIMSEKFTKKEYVLYGIVAPLVLVIAGGMAGSLA
Ga0247611_106297183	3300028591	Rumen	MKEFLRIMGKDIMSENFTRREYVVYGIVAPLVLVLFCGLAGSLA
Ga0247608_1000570812	3300028805	Rumen	MKEFLEIMGKDIMKEKFTKKEYLVYGIVAPLVLVIVCGLAGSMA
Ga0247608_100091356	3300028805	Rumen	MKEFLKIMEKDILSENFTKKEYVVYGIVAPLVMVLLCGLAGSLA
Ga0247608_101439105	3300028805	Rumen	MKEFLEIMGKDIMKENFTKKEYVVYGIVAPLVLVLVCGLAGSLA
Ga0247608_105237332	3300028805	Rumen	MKEFFEIMRKDIMSENFTRKEYVLYGIVAPLVLVLVCGMAGSLA
Ga0247608_107473352	3300028805	Rumen	MKEFWEIMGKDIMSENFTKKEYVVYGIVAPLVLVLLCGLAESLA
Ga0247608_109302721	3300028805	Rumen	MKEFLEIMGKDIMSENFTRREYVLYGIVAPLVLVLVCGLAGRLA
Ga0247608_116677891	3300028805	Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLVLVLVCGLAGSLA
Ga0247610_1000393621	3300028833	Rumen	MKEFLEIMGKDIMSENFTRREYVIYGIVAPLVLVLVCGLAGSL
Ga0247610_101656837	3300028833	Rumen	MKEFFEIMRKDIMSENFTKKEYVVYGIVAPVVLVLLCGLAES
Ga0247610_104340442	3300028833	Rumen	MKEFMEIMGKDIMSENFNRKELVVYGIVAPVVLVIVLGMAGSLA
Ga0247610_105004142	3300028833	Rumen	MKEFLKIMEKDIMSDSFTKKEYVVYGIVAPLVLVLLCGLAGSLE
Ga0247610_117932921	3300028833	Rumen	MKEFLEIMGKDIMKENFTRKEYLVYGIVAPVVLVLVCGLVGSLA
Ga0247610_118497872	3300028833	Rumen	MKEFLEIMEKDIMSENFTKKEYVVYGIVAPVVLVLLCGLAESLA
Ga0256407_1000857110	3300028886	Rumen	MKEFFNIMAKDIMSENFTRKDYVIYGIIAPMALIAICMLASMVE
Ga0247609_100080667	3300028888	Rumen	MKEFLDIMGKDILSENFTKREYVVYGIVVPVVLVLLCGLAGSLA
Ga0247609_109559173	3300028888	Rumen	MKEFMKIMEKDILSENFTQKEYVMYGIVAPLVLVLLCGLAGSLA
Ga0247609_111646392	3300028888	Rumen	MKEFLEIMGKDILSENFTKKEYVVYGIVAPLVLVLLCGLAGSLA
Ga0168687_10133037	3300029227	Host-Associated	MKEFFETMMKDIYSEHCTRREYVIYGIIAPLVLFAAVLLAGLIESI
Ga0326513_100218421	3300031760	Rumen	MKEFLEIMGKDIMKENFTKKEYVIYGVVAPLVLVLVCGLAGSLA
Ga0326513_100912315	3300031760	Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLVLLLVCGLAGSL
Ga0326513_101967234	3300031760	Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLALVLLCVLAGSLA
Ga0326513_102087795	3300031760	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPVVLVLLCGLAESLA
Ga0326513_103048303	3300031760	Rumen	MKEFLEIMGKDILSENFTKKEYLVYGIVAPVVLVLVCGLAGCLE
Ga0326513_103472893	3300031760	Rumen	MIMKEFLEIMGKDIMSEDFTCMDYVVYGIVAPLVLVLVCGLAGSLA
Ga0326513_104708924	3300031760	Rumen	IMGKDILSENFTRREYVVYGIVAPLVLVLVCVLADSLG
Ga0326513_105484793	3300031760	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVIACVMAGSLV
Ga0326513_105935001	3300031760	Rumen	MKEFLKIMGKDIMSENFTKKEYVVYGIMAPLVLVLMCVLAGSLQ
Ga0326513_105979831	3300031760	Rumen	MGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLAGSLA
Ga0326513_107280991	3300031760	Rumen	MKEFLKIMGKDILSENFTRREYVVYGIVAPLVLVLVCVLADSLG
Ga0326513_107580133	3300031760	Rumen	LEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLAGSLA
Ga0326513_108203772	3300031760	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLAGSLE
Ga0326513_108289523	3300031760	Rumen	KTIGDTAMKEFLEIMGKDIMSENFTKKEYVVYGIIAPLALVLVCVLVGSLA
Ga0326513_111136152	3300031760	Rumen	MKEFFDIMGKDILSENFTRREYVVYGIVAPLALVLVCLLMS
Ga0326513_111339942	3300031760	Rumen	MKEFMKIMGKDIMSENFTSREYVVYGIVAPLVLVLVCGLVGSLA
Ga0326513_114785372	3300031760	Rumen	MKDFLRIMGKDILSENFTRREYVVYGIIAPLVLVLVCGLVGSLA
Ga0326513_114799111	3300031760	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLAGSLA
Ga0326513_115760041	3300031760	Rumen	MKEFLEIMGKDIMSENFTKKEYVIYGIIAPLVLVLVCGLAGSLA
Ga0326513_118343432	3300031760	Rumen	MKEFFEIMGKDIMSENFTRKEIVVYGIVAPLVLVLVCGLAGSLA
Ga0326514_1000008312	3300031853	Rumen	MKELFEILSKDIKSENFTRKEIVVYGIIAPICLIAACVVAEMLNKINW
Ga0326514_100427254	3300031853	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLVCGLVGSLA
Ga0326514_100895995	3300031853	Rumen	MKEFFEIMEKDIMSENFTKKEYVVYGIVAPLVLVLLCGLAGSMA
Ga0326514_102809334	3300031853	Rumen	MKEFLKIMGKDILSENFTRREYVVYGIVAPLVLVLLCGLAGSL
Ga0326514_103000953	3300031853	Rumen	KEFLEIMGKDIMSENFTRKEYVVYGIIAPLVLVLLCGLVGSF
Ga0326514_105484902	3300031853	Rumen	MKEFLEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLAGCLE
Ga0326514_106004992	3300031853	Rumen	MKEFLEIIGKDIMSENFTRKEYVVYGIVAPVVLVLVMGIAGSLA
Ga0326514_107711802	3300031853	Rumen	MKEFLEIMGKDILSENFSKKELVVYGIVAPAVLVIVLGMAGSLA
Ga0326514_108502032	3300031853	Rumen	MKEFFEIMGKDILSENFTRKELVVYGIVAPLVLVLMCGLAGSLV
Ga0326514_108794081	3300031853	Rumen	MKKFFEIMGKDILSENFTRREYVVYGIVAPLVLVLVCVLA
Ga0326514_110979511	3300031853	Rumen	MKEFFEIMGKDIMSENFTRREYVVYGIVVPVLLVLLCG
Ga0326514_112002711	3300031853	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVIACGVAGSLV
Ga0326514_113271422	3300031853	Rumen	SIMKEFFEIMGKDIMSENFTKKEYVIYGIIAPLVLVLVCGLAGSLA
Ga0326511_100213324	3300031867	Rumen	MKDFFEIMGKDIMSENFTSREYLVYGIVAPVVLVLVCGLVGSF
Ga0326511_100292421	3300031867	Rumen	MKEFLEIMGKDILSENFTKKEYLVYGIVAPVVLVLLCGLAGSLA
Ga0326511_100311758	3300031867	Rumen	MKEFFNIMAKDILSENFTRKDYVIYGIIAPMALIAICMLASLVE
Ga0326511_100533904	3300031867	Rumen	MIMKEFLEIMGKDIMKENFTKKEYVVYGIVAPLVLVLVCGLAGSLA
Ga0326511_100892631	3300031867	Rumen	MKEFLEIMGKDIMNENFTKKEYVVYGIIAPLALVLVCGLVGSLA
Ga0326511_101049145	3300031867	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVIACVMAGSLV
Ga0326511_101313252	3300031867	Rumen	MKEFLEIIGKDIMTENFTNREYVVYGIVAPLVLVLVCGLAGSLA
Ga0326511_101324772	3300031867	Rumen	MKEFLDIMGKDILSENFTRREYVVYGIVAPLALVLVCLLMS
Ga0326511_101682314	3300031867	Rumen	MKEFLEIMGKDIMNENFTRKEYVVYGIVAPLVLVLLCGLAGSLA
Ga0326511_101943931	3300031867	Rumen	MKEFLEIMGKDILSENFTRREYVMYGIVAPVVLVIVLGLAGSLA
Ga0326511_102671514	3300031867	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSLA
Ga0326511_102798394	3300031867	Rumen	MKKFFEIMGKDILSENFTRREYVVYGIVAPLVLVLVCVLADSLG
Ga0326511_103934763	3300031867	Rumen	MKEFLEIMGKDIMNENFTRKEYVVYGIVAPLVLVLLCGLAGSLE
Ga0326511_105520221	3300031867	Rumen	FEIMGKDIMSENFTRREYVVYGIVVPVVLVLLCGLAESLA
Ga0326511_109705003	3300031867	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIIAPLVLVLLCGLAGSLA
Ga0326511_110838101	3300031867	Rumen	MKEFFEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLAGSL
Ga0326511_113360631	3300031867	Rumen	MKEFMEIMGKDIMKENFTKKEYVIYGIVAPVVLVLVCGLVGSF
Ga0326511_115462112	3300031867	Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIVAPLVLVLVCGLAGSMA
Ga0310694_100545705	3300031992	Rumen	MKEFFEIMRKDIMSENFTKKEYVVYGIVAPVVLVLLCGLAESLA
Ga0310694_102089641	3300031992	Rumen	IMGKDILSENFTKKEYVVYGIVAPLVLVLVCGLVGSLA
Ga0310694_106307902	3300031992	Rumen	MEEFLKIMGKDIMSENFTKKEYVVYGIVAPVVLVLVCGLAGSLA
Ga0310694_115711561	3300031992	Rumen	MKEFLEIMGKDILSENFTRREYVMYGIVAPVVLVIVLGMAGSLA
Ga0310691_104776282	3300031994	Rumen	MEEFLKIMGKDIMSENFTKKEYVVYGIVAPLVLVLVCGLAGSMA
Ga0310691_105486593	3300031994	Rumen	MKEFLEIMGKDIMSENFTRREYLVYGIVAPVVLVLVCGLAGSLA
Ga0310691_107896032	3300031994	Rumen	MKEFLEIMGKDIMSENFTRKEYVVYGIVAPLVLVLVCGLAGSL
Ga0310691_107933722	3300031994	Rumen	MKEFLEIMGKDIMSENFTRREYVLYGIVAPLVLVLLCGLAGRLA
Ga0310691_118051232	3300031994	Rumen	FWEIMGKDIMSENFTKKEYVVYGIVAPLVLVLLCGLAESLA
Ga0310691_121827301	3300031994	Rumen	MKEFLEIMEKDIMSENFTKKEYVVYGIVAPLVLVLLCGLAESLA
Ga0310697_117108582	3300032030	Rumen	MKEFLEIMGKDIMSENFTRREYVVYGIIAPLVLVLVCGLAGSL
Ga0326512_100063894	3300032038	Rumen	MKEFLKIMGKDIMKENFTKREYVVYGIVVPVVLVLVCGLVGSL
Ga0326512_100139604	3300032038	Rumen	MKEFLEIMGKDILSENFTKREYVVYGIVVPVVLVLLCGLAGSLA
Ga0326512_100197182	3300032038	Rumen	MKEFLEIMGKDIMKENFTRREYVVYGIVAPLVLVLVCTLAGSLA
Ga0326512_102029192	3300032038	Rumen	MKEFLKIMGKDIMTENFTRMEFLVYGIIAPLVLVLVCGLAGSLA
Ga0326512_104568903	3300032038	Rumen	MKEFLRIMGKDVMTENFTSKEFLVYGIVAPLVLVLVCGLVGSLA
Ga0326512_105409844	3300032038	Rumen	MKEFLEIMGKDILSENFSKRECLVYGIVAPVVLVIVLGLAGSLA
Ga0326512_107372521	3300032038	Rumen	MKEFLKIMGKDILSENFTRREYVVYGIVAPLVLVLVCVLAGS
Ga0326512_107865711	3300032038	Rumen	MKEFFEIMGKDIMSENFTRREYVVYGIVVPVVLVLLCGLAESLA
Ga0326512_108900941	3300032038	Rumen	MKEFLEIMEKDIMSENFTKKEYVVYGIVAPLVLVIACVMAGSLV
Ga0326512_109256231	3300032038	Rumen	MKEFLEIMGKDIMSENFTKKEYVVYGIVTPLVLVLVCGLAGSLA
Ga0326512_110165642	3300032038	Rumen	MKEFLEIMGKDILSENFTRKEYVVYGIIAPLVLVLLCGLAGSLA
Ga0326512_110487332	3300032038	Rumen	MKEFLEIMGKDIMKENFTKKEYVIYGIVAPLVLVIVCWLAGSLA
Ga0326512_112894441	3300032038	Rumen	MKEFMEIMGKDIMNENFTRKELVVYGIVAPLVLVLMCGLAGSLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062320

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences