Metagenome / Metatranscriptome Family F079361

Overview

Basic Information

• Family ID: F079361
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 116
• Average Sequence Length: 54 residues
• Representative Sequence: MIYFTIAKNDCGYLIDSISECYEVLKAKFPDEKIYKSDKPIVSIYVLKDQLNEI
• Number of Associated Samples: 37
• Number of Associated Scaffolds: 115

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 4.35 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 62.93 %
• Associated GOLD sequencing projects: 33
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (86.207 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen (81.897 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut (65.517 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 12.20%
  β-sheet: 23.17%
  Coil/Unstructured: 64.63%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04545	Sigma70_r4	57.39
PF01612	DNA_pol_A_exo1	4.35
PF01068	DNA_ligase_A_M	3.48
PF13597	NRDD	1.74
PF00149	Metallophos	1.74
PF00692	dUTPase	1.74
PF01541	GIY-YIG	0.87
PF00075	RNase_H	0.87
PF00476	DNA_pol_A	0.87
PF09424	YqeY	0.87
PF05949	DUF881	0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.48
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.48
COG0717	dCTP deaminase	Nucleotide transport and metabolism [F]	1.74
COG0756	dUTP pyrophosphatase (dUTPase)	Defense mechanisms [V]	1.74
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	0.87
COG3879	Uncharacterized conserved protein YlxW, UPF0749 family	Function unknown [S]	0.87

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
All Organisms	root	All Organisms	13.79 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Viruses	superkingdom	All Organisms → Viruses	7.76 %
cellular organisms	root	All Organisms → cellular organisms	6.03 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.86 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.86 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.86 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.86 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.86 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.86 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.86 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.86 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Neisseriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.86 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.86 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.86 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
unclassified Neisseriaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.86 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.86 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.86 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Neisseriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.86 %
unclassified Podoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae	0.86 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.86 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Neisseriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
crAss-like viruses	clade	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	0.86 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples	0.86 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.86 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.21 %
Neisseriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	3.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.59 %
Clostridium sp. CAG:492	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:492	0.86 %
crAss-like viruses	clade	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	0.86 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.86 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2061766007|rumenHiSeq_NODE_4196231_len_10153_cov_0_511080	All Organisms → Viruses	10203
2077657009|BRPC3_GDEZLPW01BOTF6	Not Available	504
2084038000|BRPC2_GFP31SK02GQM4O	Not Available	539
3300001425|yes_10965992	Not Available	893
3300001451|yes_10965992	Not Available	893
3300009871|Ga0130077_13626576	Not Available	1536
3300012016|Ga0120387_1057695	Not Available	1383
3300014057|Ga0120384_1003529	Not Available	10878
3300014057|Ga0120384_1134833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:492	857
3300021254|Ga0223824_10095107	Not Available	2722
3300021255|Ga0223825_10303995	Not Available	1627
3300021255|Ga0223825_11411006	Not Available	625
3300021255|Ga0223825_11973471	All Organisms → Viruses	8779
3300021255|Ga0223825_12406820	Not Available	547
3300021255|Ga0223825_12775952	Not Available	954
3300021387|Ga0223845_11355636	Not Available	7233
3300021387|Ga0223845_12594250	Not Available	8209
3300021399|Ga0224415_10021069	Not Available	6115
3300021399|Ga0224415_10219766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	1726
3300021540|Ga0214517_113208	Not Available	625
3300024337|Ga0255060_10075140	Not Available	1519
3300024342|Ga0255061_10107581	Not Available	1387
3300024342|Ga0255061_10186908	Not Available	1063
3300024345|Ga0255062_10000013	Not Available	25683
3300024345|Ga0255062_10018686	Not Available	2674
3300024345|Ga0255062_10065835	Not Available	1597
3300024345|Ga0255062_10100994	Not Available	1319
3300024486|Ga0255059_10000466	Not Available	9354
3300024486|Ga0255059_10248645	Not Available	823
3300024486|Ga0255059_10334994	Not Available	705
3300026526|Ga0256869_1000264	Not Available	19600
3300026549|Ga0256404_1000281	Not Available	132047
3300028048|Ga0256405_10262336	Not Available	1078
3300028591|Ga0247611_10000085	Not Available	176443
3300028591|Ga0247611_10003941	Not Available	21309
3300028591|Ga0247611_10072276	Not Available	3528
3300028591|Ga0247611_10188574	All Organisms → Viruses	2183
3300028591|Ga0247611_10480013	Not Available	1337
3300028591|Ga0247611_10660507	Not Available	1109
3300028591|Ga0247611_12092483	Not Available	521
3300028797|Ga0265301_10089369	All Organisms → Viruses → Predicted Viral	2355
3300028797|Ga0265301_10282862	Not Available	1247
3300028797|Ga0265301_10716301	Not Available	734
3300028797|Ga0265301_11158070	Not Available	551
3300028805|Ga0247608_10279285	Not Available	1652
3300028805|Ga0247608_10679988	Not Available	993
3300028805|Ga0247608_10873750	Not Available	847
3300028805|Ga0247608_11139436	Not Available	710
3300028832|Ga0265298_10100538	Not Available	2893
3300028833|Ga0247610_10002414	Not Available	21566
3300028833|Ga0247610_10054586	Not Available	3907
3300028833|Ga0247610_10189613	Not Available	2109
3300028833|Ga0247610_10209557	Not Available	2007
3300028833|Ga0247610_10317088	All Organisms → Viruses	1627
3300028833|Ga0247610_10498453	Not Available	1275
3300028833|Ga0247610_10627576	Not Available	1118
3300028833|Ga0247610_11526590	Not Available	641
3300028833|Ga0247610_11707173	Not Available	594
3300028833|Ga0247610_11765895	Not Available	580
3300028833|Ga0247610_11804614	Not Available	571
3300028833|Ga0247610_11974380	Not Available	536
3300028833|Ga0247610_12049765	Not Available	522
3300028886|Ga0256407_10590039	Not Available	818
3300028886|Ga0256407_10718169	Not Available	703
3300028888|Ga0247609_10037717	All Organisms → Viruses → Predicted Viral	4427
3300028888|Ga0247609_10132692	All Organisms → Viruses	2462
3300028888|Ga0247609_10429651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	1398
3300031085|Ga0061018_13626576	Not Available	1536
3300031760|Ga0326513_10025398	Not Available	4398
3300031760|Ga0326513_10034019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	3854
3300031760|Ga0326513_10052424	Not Available	3177
3300031760|Ga0326513_10099906	Not Available	2379
3300031760|Ga0326513_10156957	Not Available	1935
3300031760|Ga0326513_10206393	All Organisms → cellular organisms → Bacteria	1703
3300031760|Ga0326513_10355426	Not Available	1306
3300031760|Ga0326513_10823167	Not Available	830
3300031760|Ga0326513_11174251	Not Available	671
3300031760|Ga0326513_11677854	Not Available	535
3300031760|Ga0326513_11843279	Not Available	503
3300031853|Ga0326514_10000478	Not Available	27173
3300031853|Ga0326514_10090892	Not Available	2421
3300031853|Ga0326514_10158439	Not Available	1892
3300031853|Ga0326514_10250965	Not Available	1527
3300031853|Ga0326514_10253817	All Organisms → Viruses → Predicted Viral	1519
3300031853|Ga0326514_10309802	Not Available	1379
3300031867|Ga0326511_10008497	Not Available	8095
3300031867|Ga0326511_10037495	Not Available	4085
3300031867|Ga0326511_10142925	Not Available	2233
3300031867|Ga0326511_10148992	Not Available	2190
3300031867|Ga0326511_10381644	Not Available	1392
3300031867|Ga0326511_10566693	Not Available	1131
3300031867|Ga0326511_11170519	Not Available	740
3300031867|Ga0326511_11248983	Not Available	710
3300031867|Ga0326511_11507929	Not Available	629
3300031867|Ga0326511_11856770	Not Available	547
3300031992|Ga0310694_10106883	Not Available	2761
3300031994|Ga0310691_10402878	Not Available	1512
3300031994|Ga0310691_11230045	Not Available	768
3300031998|Ga0310786_10061473	Not Available	4365
3300031998|Ga0310786_10357856	Not Available	1664
3300032030|Ga0310697_10118723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → unclassified Neisseriaceae → Neisseriaceae bacterium	2589
3300032030|Ga0310697_11310738	Not Available	696
3300032038|Ga0326512_10011704	Not Available	6356
3300032038|Ga0326512_10026698	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4295
3300032038|Ga0326512_10037882	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	3631
3300032038|Ga0326512_10072545	Not Available	2666
3300032038|Ga0326512_10159809	Not Available	1804
3300032038|Ga0326512_10218103	Not Available	1533
3300032038|Ga0326512_10244173	Not Available	1444
3300032038|Ga0326512_10311609	Not Available	1264
3300032038|Ga0326512_10756744	Not Available	744
3300032038|Ga0326512_10901599	Not Available	664
3300033463|Ga0310690_10012291	Not Available	10523
3300033463|Ga0310690_10683581	Not Available	1156
3300033463|Ga0310690_10798018	Not Available	1059

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Mammals	Host-Associated → Mammals	100.00%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Mammals → Digestive System	100.00%

Type

Habitat	Taxonomy	Distribution
Foregut	Host-Associated → Mammals → Digestive System → Foregut	99.14%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	0.86%

Subtype

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	98.28%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	0.86%
Unclassified	Host-Associated → Mammals → Digestive System → Foregut → Unclassified	0.86%

Habitat

Habitat	Taxonomy	Distribution
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	81.90%
Cattle And Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen	8.62%
Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Bovine Rumen	2.59%
Sheep Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Sheep Rumen	2.59%
Goat Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Goat Rumen	1.72%
Goat Feces	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces	0.86%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	0.86%
Fungi-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen	0.86%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2061766007	Bovine rumen microbial communities fromthe University of Illinois at Urbana-Champaign, USA, that are switchgrass associated - Sample 470	Host-Associated
2077657009	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 6993	Host-Associated
2084038000	Bovine rumen viral communities from University of Illinois Dairy Farm in Urbana, IL, Cow rumen 7664	Host-Associated
3300001425	Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet	Host-Associated
3300001451	Goat rumen bacterial communities from Langston, Oklahoma, USA - velvet Assemble	Host-Associated
3300009871	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Rumen Fluid.Combined Assembly of Gp0148671, Gp0148672	Host-Associated
3300012016	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1397	Host-Associated
3300014057	Sheep rumen microbial communities from Wyoming, USA - O_aries_Forg_1208	Host-Associated
3300021254	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021255	Sheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly	Host-Associated
3300021387	Sheep rumen microbial communities from New Zealand - Tag 1283 SPADES assembly	Host-Associated
3300021399	Sheep rumen microbial communities from New Zealand - Tag 1265 SPADES assembly	Host-Associated
3300021540	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Xylan, Gen4, Rep 3, Penicillin and Streptomycin	Host-Associated
3300024337	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024342	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024345	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 RNA GHGhigh gp2 (Metagenome Metatranscriptome)	Host-Associated
3300024486	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome)	Host-Associated
3300026526	Metatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome)	Host-Associated
3300026549	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_01	Host-Associated
3300028048	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_02	Host-Associated
3300028591	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1770 DNA GHGhigh gp2	Host-Associated
3300028797	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04	Host-Associated
3300028805	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2	Host-Associated
3300028832	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_01	Host-Associated
3300028833	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2	Host-Associated
3300028886	Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04	Host-Associated
3300028888	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2	Host-Associated
3300031085	Coassembly of Cow X and Y Rumen Fluid	Host-Associated
3300031760	Bovine rumen microbial communities from UC Davis, California, United States - 2_2465_0518	Host-Associated
3300031853	Bovine rumen microbial communities from UC Davis, California, United States - 3_2548_0518	Host-Associated
3300031867	Bovine rumen microbial communities from UC Davis, California, United States - 0_2496_0518	Host-Associated
3300031992	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2 (v2)	Host-Associated
3300031994	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 DNA GHGlow gp2 (v2)	Host-Associated
3300031998	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03 (v2)	Host-Associated
3300032030	Sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2 (v2)	Host-Associated
3300032038	Bovine rumen microbial communities from UC Davis, California, United States - 1_2617_0518	Host-Associated
3300033463	Bovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_04 (v2)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
_HiSeq_25091560	2061766007	Bovine Rumen	MIYFTIAKNDCGYLIDSISRDYNLLKAKFPDAKIYKSDEPIISIYVIANQLNEAT
BRPC3_01580880	2077657009	Bovine Rumen	MIYFTIAKNECGYLIDSISEDYATLRLKFPDEKIYKSDEPIVSIYILKDQLNEVS
BRPC2_03735530	2084038000	Bovine Rumen	MIYFTIAKNECGYLIDSISECYEVLKAKFPDEKIYKSDTPIVSIYVIKDELNEI
yes_109659922	3300001425	Goat Rumen	MIYFTIAKNECGYLIDSISNDYTTLRNKFPDEKIYQSDKPIVSIYVLKDQLNEIQS
yes_109659922	3300001451	Goat Rumen	MIYFTIAKNECGYLIDSISNDYTTLRNKFPDEKIYQSDKPIVSIYVLKDQLNEIQS*
Ga0130077_136265762	3300009871	Rumen	MIYFTVTKNECGYLIDSISDCYEVLRAKFPDEKIYKSDSPIVSIYIIKDQLNEI*
Ga0120387_10576953	3300012016	Sheep Rumen	MIYFTIAKNECGYLIDSISTDLEKLKNKFPDKKIYKSDEPVVSIYVLKNQLNEI*
Ga0120384_10035296	3300014057	Sheep Rumen	MIYFTIAKNECGYLIDSISKDYSTLKLKFPNETIYYSNEPIVSIYVIKDQLKSVN*
Ga0120384_11348333	3300014057	Sheep Rumen	KGIYFTIAKNECGYLIDRISTDLEKLKYKFPDEKIYQSDEPIVSIYVLKNQLNEI*
Ga0223824_100951076	3300021254	Cattle And Sheep Rumen	MIYFTISKNDCGYLIDSISTDFEKLKYKFPDEKIYKSDEPIVSIYIIKDQLDEV
Ga0223825_103039951	3300021255	Cattle And Sheep Rumen	MIYFTIAKNDCGYLIDSISEDLEALVRKFPDEKIYKSDEPIVSIYVIKDQLNEI
Ga0223825_114110061	3300021255	Cattle And Sheep Rumen	TISKNDCGYLIDSISTDFEKLKYKFPDEKIYKSDEPIVSIYIIKDQLDEV
Ga0223825_1197347112	3300021255	Cattle And Sheep Rumen	MIYFTIAKNECGYLIDSISNDYDKLHNKFPDEKIYKSDEPIVSIYVLKDQLTVAQ
Ga0223825_124068202	3300021255	Cattle And Sheep Rumen	MIYFTISKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVIKDQLNEI
Ga0223825_127759521	3300021255	Cattle And Sheep Rumen	MIYFTISKNDYGYLIDSISEDLEALKGKFPDEKIYKSDKPIISIYVIKDQLNEI
Ga0223845_113556365	3300021387	Cattle And Sheep Rumen	MIYFTIAKNDCGYLIDSISKNYDILRAKFPNEKIYQSDEPIVSIYVIKDKLNEVSK
Ga0223845_1259425013	3300021387	Cattle And Sheep Rumen	MIYFTIAKNDCGYLIDSISEDSEALKRKFPDEKIYKSDKPIVSIYVIKDQLDEI
Ga0224415_1002106912	3300021399	Cattle And Sheep Rumen	MIYFTVAKNDCGYLIDSISNDLEKLKNKFPDEKIYKSDEPIVSIYVIKNQLNEI
Ga0224415_102197665	3300021399	Cattle And Sheep Rumen	MIYFTIAKNECGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVLKDQLNEIQD
Ga0214517_1132081	3300021540	Goat Feces	FEDIIMIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLDEIQ
Ga0255060_100751402	3300024337	Rumen	MIYFTIAKNDCGYLIDSISENLEALVRKFPDEKIYKSDEPIVSIYVIKDQLNEI
Ga0255061_101075812	3300024342	Rumen	MIYFTIAKNECGYLLDSISENYEVLKNKFPDEKIYKSDKPIVSIYIIKDQLQEYHG
Ga0255061_101869084	3300024342	Rumen	MIYFTIAKNECGYLIDSISTDLEKLKCKFPNEKIYQSDEPIVSIYVLKDKLNEIQN
Ga0255062_1000001347	3300024345	Rumen	MIYFTVAKNDCGYLIDSVSESCEALKKKFPDEKIYKSDKPIVSIYVIKDQLNEVS
Ga0255062_100186865	3300024345	Rumen	MIYFTIAKNECGYLIDSISNDLNALKNKFPDEKIYKSDEPIVSIYVLKDQLNEI
Ga0255062_100658354	3300024345	Rumen	MIYFTIAKNDCGYLIDSISRSYELLKNKFPDEVIYESDEPIVSIYVIK
Ga0255062_101009943	3300024345	Rumen	MIYFTVAKNDCGYLIDSMSKNYDILKAKFPDEKIYESDEPIVSIYVIKDQLHEVSK
Ga0255059_1000046619	3300024486	Rumen	MIYFTIAKNDCGYLIDSISECYEVLKYKFPDEKIYKSDKPIVSIYVIKDQLDEV
Ga0255059_102486453	3300024486	Rumen	MVTYFTIAKNDCGYLIDSVSYDLNALKNKFPDEKIYKSDEPVVSIYI
Ga0255059_103349942	3300024486	Rumen	MIYFTIAKNDCGYLIDSVSECYEVLKAKFPDEKIYKSDKPIVSIYVIKDQLDEVS
Ga0256869_100026428	3300026526	Rumen	MIYFTISKNDCGYLIDSISEDYSTLKLKFPNETIYHSNEPIVSIYVIKDQLKSVK
Ga0256404_1000281107	3300026549	Rumen	MIYFTIAKNECGYLIDSISEDLEALKRKFPDEKIYKSDEPIVSIYVIKDQLNEIYS
Ga0256405_102623362	3300028048	Rumen	MIYFTIAKNECGYLIDSISNNYEVLRAKFPDEKIYKSDKPIVSIYVIKSQLDEVS
Ga0247611_1000008526	3300028591	Rumen	MIYFTIAKNDCGYLIDSISTDLEKLKYKFPDEIIYQSDEPIVSIYVIKDQLNEI
Ga0247611_1000394140	3300028591	Rumen	MIYFTIAKNECGYLIDSISTDLEKLKYKFPDEKIYKSDEPIVSIYVLKNQLNEI
Ga0247611_100722762	3300028591	Rumen	MIYFTVAKNDCGYLIDSISKNYDILKAKFPDEKIYESDEPIVSIYVIKDQLHEVSK
Ga0247611_101885746	3300028591	Rumen	MIYFTIAKNDCGYLIDSISNDLEKLKNKFPDEKIYKSDEPIVSIYVLKDQLNEI
Ga0247611_104800133	3300028591	Rumen	MIYFTISKNECGYLIDSISEDYATLKLKFPDEKIYKSDEPIVSIYILKDQLNEISS
Ga0247611_106605073	3300028591	Rumen	MIYFTIAKNECGYLIDSISEDYELLKNKFPDETIYKSDKPIVSIYVIKDQLNEVS
Ga0247611_120924832	3300028591	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLKAKFPDEKIYKSDKPIVSIYILKDQLNEV
Ga0265301_100893691	3300028797	Rumen	CGYLIDSISDCYEVLKAKFPDEKIYKSDKPIVSIYILKDQLDEI
Ga0265301_102828622	3300028797	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVVKDQLDEIQS
Ga0265301_107163012	3300028797	Rumen	MIYFTIAKNDCGYLIDSISENYEVLKAKFPDEKIYKSDKPIVSI
Ga0265301_111580702	3300028797	Rumen	MIYFTIAKNECGYLIDSISEDYATLKLKFPDEKIYKSDAPIVSIYIIKDQLHEVLK
Ga0247608_102792853	3300028805	Rumen	MIYFTIAKNECGYLIDSISEDYSTLKLKFPNETIYHSDEPIVSIYVIKDKLKSVK
Ga0247608_106799882	3300028805	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLNEV
Ga0247608_108737504	3300028805	Rumen	MIYFTIAKNECGYLIDSISENYELLKNKFPDEKIYKSDKPIVSIYIIKDQLNEVS
Ga0247608_111394362	3300028805	Rumen	MIYFTIAKNECGYLIDSISEDYATLKLKFPDEKIYKSDEPIVSIYVIKDELNEIQD
Ga0265298_101005384	3300028832	Rumen	MIYFTIAKNDCGYLIDSISNSYEVLKAKFPDEKIYKSDKPIVSIYVLKDQLDEVFG
Ga0247610_1000241425	3300028833	Rumen	MIYFTIAKNECGYLIDSISTDLEKLKCKFPNEKIYQSDEPIVSIYILKDKLNEIQN
Ga0247610_100545868	3300028833	Rumen	MIYFTIAKNDCGYLIDSISECYEVLRAKFPDEKIYKSDKPIVSIYILKEELNEIQN
Ga0247610_101896135	3300028833	Rumen	MIYFTISKNDYGYLIDSISEDLEALKRKFPDEKIYKSDKPIISIYVIKEQLNEI
Ga0247610_102095575	3300028833	Rumen	MIYFTIAKNECGYLIDSISDCYEVLRAKFPDEKIYKSNKPIVSIYVIKDQLDEIQS
Ga0247610_103170885	3300028833	Rumen	MIYFTVAKNDCGYLIDSMSKNYDILKAKFPDEKIYESDELIVSIYVIKDQLHEVSK
Ga0247610_104984532	3300028833	Rumen	MIYFTIAKNECGYLIDSISEDYATLKLKFPDEKIYKSDKPIVSIYVIKDQLNEIQD
Ga0247610_106275761	3300028833	Rumen	MIYFTIAKNECGYLLDSISENYEVLKNKFPDEKIYKSDEPIVSIYIVKDQLQEYNG
Ga0247610_115265902	3300028833	Rumen	MIYFTIAKNEYGYLIDSISEDLEALVRKFPDEKIYKSDEPIVSIHIIKTQLNEV
Ga0247610_117071732	3300028833	Rumen	MIYFTVSKDEYGYLIDSISEDLEMLKNKFPYEKIYKSNEPILSIYILKEQLHE
Ga0247610_117658953	3300028833	Rumen	YFTIAKNDCGYLIDSVSECYEVLKAKFPDEKIYKSDKPIVSIYVIKDQLDEVS
Ga0247610_118046141	3300028833	Rumen	MIYFTIAKNDCGYLIDSISNNYEMLKNKFPDITIYESDEPIVSIYVIKDKLKKYGD
Ga0247610_119743802	3300028833	Rumen	MIYFTIAKNECGYLIDSISTDLEKLKYKFPDEKIYQSDEPIVSIYVLKNQLNEI
Ga0247610_120497652	3300028833	Rumen	MIYFTIAKNECGYLIDSISENYELLKNKFPDETIYKSDKPIVSIYVIKDQLNEVS
Ga0256407_105900392	3300028886	Rumen	MIYFTIAKNDCGYLIDSISEDYATLRLKFPDEKIYKSDKPIVSIYILKDQLNEIQD
Ga0256407_107181693	3300028886	Rumen	MIYFTISKNECGYLIDSISEDYSTLKLKFPNETIYHSDEPIVSIYVIKDQLKSVK
Ga0247609_100377179	3300028888	Rumen	MIYFTISKNECGYLIDSISEDYATLKLKFPNETIYHSDEPIVSIYVIKDQLKSVK
Ga0247609_101326923	3300028888	Rumen	MIYFTIAKNECGYLLDSISENYEVLKNKFPDEKIYKSDEPIVSIYIIKDQLQEYNG
Ga0247609_104296514	3300028888	Rumen	VTYFTIAKNECGNLIDSISYDYNALKNKFPDEKIYYSEDPIINIYVSELKEYNG
Ga0061018_136265762	3300031085	Fungi-Associated Bovine Rumen	MIYFTVTKNECGYLIDSISDCYEVLRAKFPDEKIYKSDSPIVSIYIIKDQLNEI
Ga0326513_100253984	3300031760	Rumen	MIYFTISKNDCGYLIDSISECYEVLRAKFPYEKIYKSDKPIVSIYIIKDQLKEYNA
Ga0326513_100340194	3300031760	Rumen	MIYFTIAKNDCGYLIDSISECYEVLKAKFPDEKIYKSDKPIVSIYVLKDQLNEI
Ga0326513_100524243	3300031760	Rumen	MIYFTVAKNECGYLIDSVSKDYTILRNKFPDEKIYLSDEPIVSIYVIKDQLHEVPNS
Ga0326513_100999062	3300031760	Rumen	MIYFTIAKNDCGYLIDSISNNYEVLRAKFPDEKIYKSDKPIVSIYVLKDQLDEVLG
Ga0326513_101569575	3300031760	Rumen	MIYFTIAKNECGYLIDSISTDLEKLKYKFPNEKIYQSDEPIVSIYVLKD
Ga0326513_102063935	3300031760	Rumen	MIYFTIAKNECGYLIDSISNDSKALKNKFPNETIYQSDEPIVSIYVIKENLIKNG
Ga0326513_103554264	3300031760	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVIKDQLDEIP
Ga0326513_108231674	3300031760	Rumen	MIYFTIAKNDCGYLIDSVSESYTLLREKFPDEKIYLSDKPIVSIYVIKDQLNEVS
Ga0326513_111742512	3300031760	Rumen	MIYFTVAKNDCGYLIDSVSESYEALKKKFLDEKIYKSDKPIVSIYVIKDQLNEVS
Ga0326513_116778542	3300031760	Rumen	MIYFTVAKNDCGYLIDSISKDYDILKAKFPDEKIYKSDEPIVSIYVIKDQLHEVFK
Ga0326513_118432791	3300031760	Rumen	MIYFTVSKNECGYLIDSISECYEVLRYKFPDEKIYKSDKPIVSIYVIKDQLNEV
Ga0326514_1000047856	3300031853	Rumen	MIYFTISKNDCGYLIDSISEDYATLKLKFPDEKIYKSDEPIVSIYVLKDQLKEIE
Ga0326514_100908922	3300031853	Rumen	MIYFTIAKNDCGYLIDSISNTYEVLKAKFPDEKIYKSDKPIVSIYVIKDQLNEAT
Ga0326514_101584393	3300031853	Rumen	MIYFTVAKNDCGYLIDSISECYEVLKYKFPDEKIYKSDKPIVSIYVLKDQLDEIQD
Ga0326514_102509652	3300031853	Rumen	MIYFTISKYDTGYLIDSISTDYTALKVKFPDEKIYKSDKPILSIYVIKDQLIDA
Ga0326514_102538175	3300031853	Rumen	MIYFTIAKNDCGYLIDSISNSYEVLRAKFPDEKIYKSDKPIVSIYVLKDQLDEVLG
Ga0326514_103098023	3300031853	Rumen	VIYFTIAKNECGYLIDSISTDLEKLKYKFPDEKIYQSDEPIVSIYVLKNQLNEI
Ga0326511_100084977	3300031867	Rumen	MIYFTIAKNECGYLIDSISDCYEVLKAKFPDEKIYKSDKAIVSIYVIKDELDEYGKDQDNIEDNNSN
Ga0326511_100374958	3300031867	Rumen	VIYFTIAKNDCGYLIDSISEDYATLKLKFPDEKIYKSDKPIVSIYVIKDQLNEIQD
Ga0326511_101429253	3300031867	Rumen	MIYFTVAKNDCGYLIDSISKNYDILKSKFPDEKIYESDEPIVSIYVIKDQLHEVSK
Ga0326511_101489925	3300031867	Rumen	MIYFTIAKNECGYLIDSISDSYEVLRAKFPNEKIYKSDKPIISIYIIKDQLNEI
Ga0326511_103816444	3300031867	Rumen	MIYFTISKNECGYLIDSISEDYATLKLKFPDEKIYKSDKPIVSIYVLKDQLKEIE
Ga0326511_105666932	3300031867	Rumen	MIYFTIAKNDCGYLIDSISECYEVLRAKFPDEKIYKSDKPIVSIYVLKDQLDEVFG
Ga0326511_111705193	3300031867	Rumen	MIYFTIAKNDCGYLIDSISTDLEKLKYKFPDEKIYKSDAPIVSIYIIKDQLNEV
Ga0326511_112489833	3300031867	Rumen	MIYFTVAKNDCGYLIDSVSESYTLLKEKFPDEKIYISDKPIVSIYVIKDQLNEVSX
Ga0326511_115079292	3300031867	Rumen	MIYFTIAKNECGYLIDSISSNYEVLRAKFPDEKIYKSDKPIVSIYVIKDQLDEVFR
Ga0326511_118567701	3300031867	Rumen	MWLRFKSIIMIYFTISKNECGYLIDSISEDYSTLKLKFPNETIYHSDEPIVSIYVIKDQLKSVK
Ga0310694_101068835	3300031992	Rumen	MIYFTIAKNDCGYLIDSISDYYEVLKAKFPDEKIYKSDKPIVSIYILKDQLNEV
Ga0310691_104028782	3300031994	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYILKDQLNEVX
Ga0310691_112300451	3300031994	Rumen	MIYFTVAKNDCGYLIDSVSESYEALKKKFPDEKIYKSDKPIVSIYVIKDQLNEVS
Ga0310691_115723913	3300031994	Rumen	YLIDSISECYEVLKYKFPDEKIYKSDKPIVSIYVIKDQLDEV
Ga0310786_100614733	3300031998	Rumen	MIYFTIAKNECGYLIDSISEDYATLKLKFPDTKIYKSDAPIVSIYVIKEKLNEVSK
Ga0310786_103578563	3300031998	Rumen	MIYFTIAKNECGYLIDSVSEDYSALKLKFPDEKIYKSDEPIVSIYIIKDQLNEVS
Ga0310697_101187234	3300032030	Rumen	MVTYFTIAKNECGNLIDSISHDYNALKNKFPDEKIYYSEDPIINIYVSELKEYNG
Ga0310697_113107383	3300032030	Rumen	MIYFTIAKNECGYLIDSVSRDLEALRNKFPDEKIYQSDEPIVSIYVIKDKLLEVGKD
Ga0326512_100117045	3300032038	Rumen	MIYFTIAKNDCGYLIDSVSESYTLLKEKFPDEKIYKSDKPIVSIYVIKDQLDEVS
Ga0326512_100266989	3300032038	Rumen	MIYFTVAKNECGYLIDSISESYEVLRYKFPDEKIYKSDKPIVSIYVIKDELNEI
Ga0326512_100378825	3300032038	Rumen	MIYFTIAKNDCGYLIDSISNDYQILKDKFPDEKIYKSDKPIVSIYVLKDQLDEVFG
Ga0326512_100725452	3300032038	Rumen	MIYFTIAKNDCGYLIDSISEDYATLKLKFPDEKIYKSDKPIVSIYVIKDQLNEIQD
Ga0326512_101598095	3300032038	Rumen	MIYFTISKNECGYLIDSISENLEALMKKFPDEKIYKSDEPIVSIYIIKDQLNEI
Ga0326512_102181033	3300032038	Rumen	MIYFTISKNDCGYLIDSISEDYSTLKLKFPNETIYKSDEPIVSIYVIKDRLKEIK
Ga0326512_102441733	3300032038	Rumen	MIYFTISKNDCGYLIDSISEDYSTLKLKFPNETIYKSNEPIVSIYVIKDQLKSINNEI
Ga0326512_103116092	3300032038	Rumen	MIYFTIAKNDCGYLIDSISEDLEALVRKFPDEKIYKSDEPIVSIYIIKDQLNEI
Ga0326512_107567443	3300032038	Rumen	MIYFTIAKNDCGYLIDSISEDLEALKRKFPDEKIYKSDEPIVSIYIIKDRLNEI
Ga0326512_109015992	3300032038	Rumen	MIYFTIAKNECGYLIDSISENYELLTNKFPDKTIYKSDKPIVSIYVIKDQLNEVS
Ga0310690_100122916	3300033463	Rumen	MIYFTIAKNECGYLIDSISDCYEVLKAKFPDEKIYKSDKPIVSIYILKDQLDEI
Ga0310690_106835811	3300033463	Rumen	DIIMIYFTISKNDCGYLIDSISETYEVLRAKFPDEKIYKSDKPIVSIYILKDQLDEV
Ga0310690_107980182	3300033463	Rumen	MIYFTIAKNDCGYLIDSISDCYEVLRAKFPDEKIYKSDKPIVSIYVVKDQLDEIQSXKNISC