Scaffold Ga0114974_10002650

Overview

Basic Information

• Taxon OID: 3300009183
• Scaffold ID: Ga0114974_10002650
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13751
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (85.37%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F002935	Metagenome	519	Y
F029434	Metagenome / Metatranscriptome	188	Y
F030765	Metagenome	184	Y
F076101	Metagenome / Metatranscriptome	118	Y
F079977	Metagenome	115	Y
F085708	Metagenome / Metatranscriptome	111	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114974_1000265013	F085708	GAGG	MNRLLTTLVQIGIGIPALYCARLMWREISNDFREWDKTQ*
Ga0114974_1000265015	F087194	AGG	MTLEEYKQYVEAQRLSSLAIALEALTKSKAIQEQQGVK*
Ga0114974_1000265017	F029434	GGA	MNKYTFGVWLDIDAEDEDMALSLFDSVINNTFVKDSYCFEWKEVDNV*
Ga0114974_1000265018	F076101	GAGG	MYKITLSYDGNAPHWQGDYYDEMQAWKAFFSFTDWGFANEFSTVNIYNPELKCYTKIFYREGQKVVEK*
Ga0114974_1000265022	F079977	N/A	MNDVMEILAKWHPNGDFTEEDLWDAIAESEGVDVNEISDQDLTEFI*
Ga0114974_1000265030	F002935	AGGA	MSNRSIGYTGNVLDGKKLAKIANDIYRAQYSNDFSECKVDDLLLIELEEKNVFGDPKYAVLCSEGVGWEQDSYGCLEIPTNIGQMGLWNGRVFISVDTVKSCQTIFKKDVSEYIRTFGDRLDRNCSLWQSKMSKEPTTVLG*
Ga0114974_1000265041	F030765	GAG	MDTEKSFDKEFDVEETTKVIVDKAKAEVRSRYGNKKRHRQ*
Ga0114974_100026505	F000684	AGGA	MTLQGYTYQIGDLFTTSTTGVTGRIEKFIPMRNDVTKVMLRLANNQQRFAMVKTK*