3300010223: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3

Overview

Basic Information

• IMG/M Taxon OID: 3300010223
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121426 | Gp0154206 | Ga0136270
• Sample Name: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3
• Sequencing Status: Permanent Draft
• Sequencing Center: Fidelity Systems Inc
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81600217
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities Enriched With Nitrile Substrates
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → aquifer → fresh water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bangor, North Wales, UK
• Coordinates
  • Lat. (^o): 53.23
  • Long. (^o): -4.13
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F094045	Metagenome	106	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y
F103138	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0136270_1000223	All Organisms → cellular organisms → Bacteria	23862
Ga0136270_1001194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5298
Ga0136270_1001975	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3699
Ga0136270_1002446	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3235
Ga0136270_1003291	All Organisms → cellular organisms → Bacteria	2608
Ga0136270_1003705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2398
Ga0136270_1003863	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2324
Ga0136270_1015146	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	825

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0136270_1000223	Ga0136270_10002235	F094045	MKYASIFFTILFIWLAIIIMAFSSPSTKEVFQLYLTVMLSTIVLFLIGFARK*
Ga0136270_1001194	Ga0136270_10011941	F038776	YSSLENTICKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDPEEKVASENWKVSINKISGDLQVSYKGDPLVRVAYSKLGIPRAELNKAEQYLPQKLADNKKLVTALLNELNESAKKEVLSKYPELV*
Ga0136270_1001194	Ga0136270_10011945	F094469	MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLAKSKSALVASTEEQLALSVQNNPTYKSKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPTEKDGPNTEVRLAEAKLLSETINKKINE*
Ga0136270_1001975	Ga0136270_10019754	F040370	MGSNNFFKSDLYDIHSIIQASMIVYPKEIILATLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADLPITSYGSSAALGDLLSTRLFIGENYRHDGIYYPAILVKNGGSKYVPISINREKGAVQYEDVVFEDGYGNKTIIHSPAYFVTAGAWEGQIIIDVMSRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPSIGAPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDAIFFTATFEDLSNPTAPVSPNITINTELNVLDMLLNS*
Ga0136270_1002446	Ga0136270_10024465	F096147	ISAYLKMDAENLKKEFVPKYIANGEQKFYRFLILYAVNKLMAIKNGKYKGVSPELEFMKYYDCFIILYRREGDSTYXXXXDLARLFRKAAHKIYRVMLKEDMTPRNAKFLNLV*
Ga0136270_1003291	Ga0136270_10032913	F103138	MQGTILLNYNENVKQIEEEEKLSFLRNLLEQMGVPIDDFWTIGTVLSIEQRMKLRTILATYGIQVIDDLDGHMQVYVERELVGEWFKSTYKLKRDLRELDPRKQLYMEMTINFWTIFEEQEQ*
Ga0136270_1003705	Ga0136270_10037056	F042607	MPLRVIDNKRVDLTYAEDQMYQKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVDELCTEVREKIKDK*
Ga0136270_1003863	Ga0136270_10038632	F042051	MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGKXXXXVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSASDQVIKDSVDFEDLKRRVTPPTPEMVQKRIDKINGVTGETAEAAPEPKAGKAKSAAKSAPAPVSMTDEEDEAFPAYDGDQKNA*
Ga0136270_1015146	Ga0136270_10151461	F031713	KARKDVDGQTFYVGKLKCPVMIDASEGVVFLVFVSDKGDEQLQIAPMDKKEDD*