Sample 3300010223

Overview

Basic Information
IMG/M Taxon OID	3300010223 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121426 \| Gp0154206 \| Ga0136270
Sample Name	Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3
Sequencing Status	Permanent Draft
Sequencing Center	Fidelity Systems Inc
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	81600217
Sequencing Scaffolds	8
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Enriched With Nitrile Substrates
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → aquifer → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Bangor, North Wales, UK
Coordinates	Lat. (^o)	53.23	Long. (^o)	-4.13	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F094045	Metagenome	106	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y
F103138	Metagenome	101	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136270_1000223	All Organisms → cellular organisms → Bacteria	23862	Open in IMG/M
Ga0136270_1001194	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5298	Open in IMG/M
Ga0136270_1001975	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3699	Open in IMG/M
Ga0136270_1002446	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3235	Open in IMG/M
Ga0136270_1003291	All Organisms → cellular organisms → Bacteria	2608	Open in IMG/M
Ga0136270_1003705	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2398	Open in IMG/M
Ga0136270_1003863	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2324	Open in IMG/M
Ga0136270_1015146	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	825	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0136270_1000223

All Organisms → cellular organisms → Bacteria

23862

Open in IMG/M

Ga0136270_1001194

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

5298

Open in IMG/M

Ga0136270_1001975

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

3699

Open in IMG/M

Ga0136270_1002446

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

3235

Open in IMG/M

Ga0136270_1003291

All Organisms → cellular organisms → Bacteria

2608

Open in IMG/M

Ga0136270_1003705

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2398

Open in IMG/M

Ga0136270_1003863

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

2324

Open in IMG/M

Ga0136270_1015146

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

825

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0136270_1000223	Ga0136270_10002235	F094045	MKYASIFFTILFIWLAIIIMAFSSPSTKEVFQLYLTVMLSTIVLFLIGFARK*
Ga0136270_1001194	Ga0136270_10011941	F038776	YSSLENTICKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDPEEKVASENWKVSINKISGDLQVSYKGDPLVRVAYSKLGIPRAELNKAEQYLPQKLADNKKLVTALLNELNESAKKEVLSKYPELV*
Ga0136270_1001194	Ga0136270_10011945	F094469	MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLAKSKSALVASTEEQLALSVQNNPTYKSKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPTEKDGPNTEVRLAEAKLLSETINKKINE*
Ga0136270_1001975	Ga0136270_10019754	F040370	MGSNNFFKSDLYDIHSIIQASMIVYPKEIILATLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADLPITSYGSSAALGDLLSTRLFIGENYRHDGIYYPAILVKNGGSKYVPISINREKGAVQYEDVVFEDGYGNKTIIHSPAYFVTAGAWEGQIIIDVMSRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPSIGAPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDAIFFTATFEDLSNPTAPVSPNITINTELNVLDMLLNS*
Ga0136270_1002446	Ga0136270_10024465	F096147	ISAYLKMDAENLKKEFVPKYIANGEQKFYRFLILYAVNKLMAIKNGKYKGVSPELEFMKYYDCFIILYRREGDSTYXXXXDLARLFRKAAHKIYRVMLKEDMTPRNAKFLNLV*
Ga0136270_1003291	Ga0136270_10032913	F103138	MQGTILLNYNENVKQIEEEEKLSFLRNLLEQMGVPIDDFWTIGTVLSIEQRMKLRTILATYGIQVIDDLDGHMQVYVERELVGEWFKSTYKLKRDLRELDPRKQLYMEMTINFWTIFEEQEQ*
Ga0136270_1003705	Ga0136270_10037056	F042607	MPLRVIDNKRVDLTYAEDQMYQKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVDELCTEVREKIKDK*
Ga0136270_1003863	Ga0136270_10038632	F042051	MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGKXXXXVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSASDQVIKDSVDFEDLKRRVTPPTPEMVQKRIDKINGVTGETAEAAPEPKAGKAKSAAKSAPAPVSMTDEEDEAFPAYDGDQKNA*
Ga0136270_1015146	Ga0136270_10151461	F031713	KARKDVDGQTFYVGKLKCPVMIDASEGVVFLVFVSDKGDEQLQIAPMDKKEDD*

Scaffold ID

Protein ID

Family

Sequence

Ga0136270_1000223

Ga0136270_10002235

F094045

MKYASIFFTILFIWLAIIIMAFSSPSTKEVFQLYLTVMLSTIVLFLIGFARK*

Ga0136270_1001194

Ga0136270_10011941

F038776

YSSLENTICKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDPEEKVASENWKVSINKISGDLQVSYKGDPLVRVAYSKLGIPRAELNKAEQYLPQKLADNKKLVTALLNELNESAKKEVLSKYPELV*

Ga0136270_1001194

Ga0136270_10011945

F094469

MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLAKSKSALVASTEEQLALSVQNNPTYKSKMLELAGKELDIRQIVTNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPTEKDGPNTEVRLAEAKLLSETINKKINE*

Ga0136270_1001975

Ga0136270_10019754

F040370

MGSNNFFKSDLYDIHSIIQASMIVYPKEIILATLRDYFSKDSYYHFSKDQWGFPNTTDHTNLPPGADLPITSYGSSAALGDLLSTRLFIGENYRHDGIYYPAILVKNGGSKYVPISINREKGAVQYEDVVFEDGYGNKTIIHSPAYFVTAGAWEGQIIIDVMSRSLRARDDLAQLIGMCFAEITVDSLYDVGIIVKPPSIGAPSETDDRNDKLFRQSITLDIRTEWRREIPIGNIIDAIFFTATFEDLSNPTAPVSPNITINTELNVLDMLLNS*

Ga0136270_1002446

Ga0136270_10024465

F096147

ISAYLKMDAENLKKEFVPKYIANGEQKFYRFLILYAVNKLMAIKNGKYKGVSPELEFMKYYDCFIILYRREGDSTYXXXXDLARLFRKAAHKIYRVMLKEDMTPRNAKFLNLV*

Ga0136270_1003291

Ga0136270_10032913

F103138

MQGTILLNYNENVKQIEEEEKLSFLRNLLEQMGVPIDDFWTIGTVLSIEQRMKLRTILATYGIQVIDDLDGHMQVYVERELVGEWFKSTYKLKRDLRELDPRKQLYMEMTINFWTIFEEQEQ*

Ga0136270_1003705

Ga0136270_10037056

F042607

MPLRVIDNKRVDLTYAEDQMYQKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVDELCTEVREKIKDK*

Ga0136270_1003863

Ga0136270_10038632

F042051

MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGKXXXXVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSASDQVIKDSVDFEDLKRRVTPPTPEMVQKRIDKINGVTGETAEAAPEPKAGKAKSAAKSAPAPVSMTDEEDEAFPAYDGDQKNA*

Ga0136270_1015146

Ga0136270_10151461

F031713

KARKDVDGQTFYVGKLKCPVMIDASEGVVFLVFVSDKGDEQLQIAPMDKKEDD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300010223: Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 3

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences