3300006627: Soil microbial communities from the Leymus chinensis steppe, China - after adding 28 g N m- 2, yr-1

Overview

Basic Information

• IMG/M Taxon OID: 3300006627
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117801 | Gp0125026 | Ga0101571
• Sample Name: Soil microbial communities from the Leymus chinensis steppe, China - after adding 28 g N m- 2, yr-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Chengdu Institute of Biology, Chinese Academy of Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 338697082
• Sequencing Scaffolds: 18
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: the Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
• Coordinates
  • Lat. (^o): 43.63
  • Long. (^o): 116.7
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000569	Metagenome / Metatranscriptome	1018	Y
F000776	Metagenome / Metatranscriptome	895	Y
F001203	Metagenome / Metatranscriptome	748	Y
F010137	Metagenome / Metatranscriptome	308	Y
F014123	Metagenome / Metatranscriptome	265	Y
F016524	Metagenome / Metatranscriptome	246	Y
F024195	Metagenome / Metatranscriptome	207	Y
F030071	Metagenome / Metatranscriptome	186	Y
F031471	Metagenome / Metatranscriptome	182	Y
F031996	Metagenome / Metatranscriptome	181	Y
F039117	Metagenome / Metatranscriptome	164	Y
F042886	Metagenome / Metatranscriptome	157	Y
F053455	Metagenome	141	Y
F063827	Metagenome / Metatranscriptome	129	N
F066027	Metagenome	127	Y
F077506	Metagenome / Metatranscriptome	117	Y
F087255	Metagenome / Metatranscriptome	110	Y
F094045	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101571_10046238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	688
Ga0101571_10254439	Not Available	612
Ga0101571_10257443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	914
Ga0101571_10375170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	551
Ga0101571_10503153	All Organisms → cellular organisms → Bacteria	1008
Ga0101571_10580739	Not Available	688
Ga0101571_10620959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	624
Ga0101571_10896702	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	994
Ga0101571_10977053	Not Available	911
Ga0101571_10988399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590
Ga0101571_11017840	Not Available	1013
Ga0101571_11310493	Not Available	544
Ga0101571_11485566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	521
Ga0101571_11510218	Not Available	540
Ga0101571_11830922	Not Available	615
Ga0101571_12052357	All Organisms → cellular organisms → Bacteria	521
Ga0101571_12302112	Not Available	525
Ga0101571_12320687	Not Available	643

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101571_10046238	Ga0101571_100462382	F000776	MGDIDPLGMRKDGLDIFLDQKVEEGYTIETRTDTHAVIARRPKGLRRIMSGADPGRYVVEVDEDGVAKMRPAEPRRA*
Ga0101571_10254439	Ga0101571_102544391	F077506	VHGGDLVEWFVRAGEGIVVNDFTVLRDNEVAEIVEMLPGRIYSVDLFKAWEGVFFSEEQCIYLGVWHDNVHNLRSDGQTGLAIVGLWHVLCYWLQKAHYPDDMQDVPPSELAWHYIRKTERWVTANLRRNTVRRADVLSTISAQQGDALFLSPPARNSFRSADARIWMWEAWWQGNPYYNIEHSYRDSLFGARSSDENGYARAF
Ga0101571_10257443	Ga0101571_102574432	F014123	IAIGKVPGWDNLATFTEDLKATPKWRIDPRTTITEVVALADGRMLAECHANSQDDFDAWLREKGWQVESVTPIKHVARTGEIWKVG*
Ga0101571_10375170	Ga0101571_103751702	F001203	VTSENWHEERDRLVELLAGIESGRITHIDDDNLRQLQATSPQNIAVIRERLAE
Ga0101571_10503153	Ga0101571_105031532	F042886	MAADEIQGRAAFGELVDELTDSDLVIEVAANGTARQALETGPLKRLQEAVAASYKALAGTVPVQLETVAVLEEVSKRSLSLWLRVRHAGDGTLAGSADASLLKFLARGTLAIIAWMDGSSTHQLADLQQAIRVLAWGTSVTTSAQPALPSSSDLVDAISAWQRAKESLDSADKVRILTNNGSAQLDLGKRIVEPRTLLQSRKLVNHSTDMIFVVEMPDYHATGQWQLKHGGM
Ga0101571_10580739	Ga0101571_105807391	F031996	FFIVCSVILILTGVAQFLVRPRKDGESALEKVLNRSAMTALLSVTIGVLGLLLGLGIVKMPRL*
Ga0101571_10620959	Ga0101571_106209591	F066027	VAEIEWKPLPTPMWPERSVMADWSGLILEASFEQGVPTWKVQRRMGKNALPTLVASGTADSLKAAKAAALHVAETELRSSSQGQPAE*
Ga0101571_10896702	Ga0101571_108967022	F094045	MKYVSIFATILLIWVAVILMALTSNSSQQIYELYLAVIVCTVALFLIGFARK*
Ga0101571_10977053	Ga0101571_109770531	F031471	MKLTGFTAIEYAEKEGLRLNKAADHIDDAQTGLTIAEAEAIASGDPEIIWLEVAENDYYGEPKNMQPER*
Ga0101571_10988399	Ga0101571_109883991	F030071	ENGVIRMYAFVVFAGLALALATVGEVLNEILPVKAPKALTTSVSVGLAILVAWALNYSVFRAFGQPLRAEWMNPVATGVVLVGMGEAIRAVLNNLGLNINISGRSKTA*
Ga0101571_11017840	Ga0101571_110178402	F024195	MGDKIFNVATAITTIGLVTAVVSRPASANIIKAMGDAFAGSIKAALG*
Ga0101571_11310493	Ga0101571_113104931	F053455	ERDTLKKAVSKFAHEPTKSELLGRLELEDSEYRAGTEEWNHLKYCIEQHHLHAQTEVRRDPKKKSAKVQLDKADALVRRFHPNFA*
Ga0101571_11485566	Ga0101571_114855661	F010137	MPRGGNKRHHFALNRILIGGLIVYVCAFAILLRNESFDATGAVVVLIVFGIVFPLIAWIATRRAIPLSISITPSKSQLIVLFGYIIVLSIYLVGGPQWIDQHLPSSWIDSAQTRFFITLAKKLIVFVVIPLAIFRSGFGYRLRDFGIQSEGLRALRGTHLSVVVVVGGAFVAF
Ga0101571_11510218	Ga0101571_115102181	F016524	PIRVEGWAYTPGARVSLRLQFRSQSTYARVKAQFHNPSGGVIKLEGVTHTREESGAAHTEVVLTGNVPENAALGTYECRSVEGLTGEGKWAPIFEDPAFNIRVVQRPFHAQRGGEFLGLEPA*
Ga0101571_11830922	Ga0101571_118309222	F039117	VYLEVTLLNGQNYSIPVEEGRSVEEELELFLRQDGRYAADWVPLQKASRKLFVR*
Ga0101571_12052357	Ga0101571_120523571	F063827	QHWFQGMPGRLRTSWTWICLGRGDRTLPGQPEAIRASVASLPDAGRRDLATALLELTQLVAVQDALDEQFEESTVEVFGQGAVLLYHRVAQDQRIIQVVQLLWLG*
Ga0101571_12302112	Ga0101571_123021121	F087255	VPSLFRDPVPVTYVDSDNNEIVTSWEGSLLPRTGENVRIADTPYLVERIGYDVPKDKIERVWIVLRPA*
Ga0101571_12320687	Ga0101571_123206871	F000569	MDLHIKKVWLPGAASCLLFFGFYFVLIWLPFDKNRFQFMAIPYLVLPFVGAFAAYWSRRMKGSVLERILSALFPVFAFVALFAVRIVYALFFEGEPYTLPHFLAGFSVTLVFIV