3300000476: ZC3D78

Overview

Basic Information

• IMG/M Taxon OID: 3300000476
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0073241 | Gp0054480 | Ga0011579
• Sample Name: ZC3D78
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19180390
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo Park
• Coordinates
  • Lat. (^o): -23.651079
  • Long. (^o): -46.620668
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059782	Metagenome	133	Y
F078430	Metagenome	116	N
F094045	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ZC3D78_104610	Not Available	1224
ZC3D78_109264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	813
ZC3D78_113584	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
ZC3D78_104610	ZC3D78_1046103	F059782	MRVEFQVARGRMIRGKGSQVAAFSVLLDIDSEHLDVLERADIAQRLITRFAQAIAEEFGGQEIDIRRPRE*
ZC3D78_109264	ZC3D78_1092642	F094045	MKYLSIFFTILFVWVAVLLMALTRDNTTEIFQLYLAVMVSTVVLFLIGFAKK*
ZC3D78_113584	ZC3D78_1135841	F078430	GVVLPRVYVQESEPDWVGKLIRRWTLRTRPLEWSEYQAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*