3300022751: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L212-509R-1

Overview

Basic Information

• IMG/M Taxon OID: 3300022751
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290987 | Ga0247817
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L212-509R-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 677246339
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas	1
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003605	Metagenome / Metatranscriptome	477	Y
F010082	Metagenome	308	Y
F027599	Metagenome / Metatranscriptome	194	Y
F034190	Metagenome / Metatranscriptome	175	Y
F041209	Metagenome / Metatranscriptome	160	Y
F046210	Metagenome / Metatranscriptome	151	N
F051903	Metagenome / Metatranscriptome	143	Y
F060965	Metagenome / Metatranscriptome	132	Y
F092248	Metagenome / Metatranscriptome	107	Y
F094045	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247817_10003934	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	7452
Ga0247817_10023934	All Organisms → cellular organisms → Eukaryota	2568
Ga0247817_10032795	All Organisms → cellular organisms → Eukaryota	2090
Ga0247817_10052638	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1538
Ga0247817_10062590	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1378
Ga0247817_10152533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas	797
Ga0247817_10156168	Not Available	786
Ga0247817_10164998	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	760
Ga0247817_10183427	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	715
Ga0247817_10218999	Not Available	645
Ga0247817_10283779	Not Available	555

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247817_10003934	Ga0247817_100039348	F010082	VLLDQKNNNMLTPRLTNCKECITISNLIKDIDCKLSDLANLLYNNIVFMLNHPVEYSVYLDLLNYKRILLFKYCNPSYAGCYTVEMIASKVKLLKYK
Ga0247817_10023934	Ga0247817_100239342	F046210	MKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAALKSCNVNS
Ga0247817_10032795	Ga0247817_100327952	F092248	LLRLLLPLSDKVYLTSHDQVKPAHSPEGSPDHSKSVGATGGVYKGQGRNQHKLMTYAY
Ga0247817_10052638	Ga0247817_100526381	F041209	VDPALCEQIASLRRKLRHQSGKHVLFLDETALRLSAAPNHTIVLPGEKPFIVAEETSAYSKRFDMIACCVGDRVLLPKIFTPKERAGADVKGINGPMLLQFIDDVLAQAVEGLDRYPLTLVLDRAPIHRDVDSIRQAFRDRGSESIKDIILLPPNAAKRVSPLDNALFHDWKEECRKHCPVTLRTIQRVMSDAWMKMKPGPHYRGSGITRTKDPYFDCPAPHEHRHGS
Ga0247817_10062590	Ga0247817_100625901	F051903	MCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGIDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRRQDVYFDCPNPATHRHGS
Ga0247817_10152533	Ga0247817_101525331	F060965	VPFVIPQINNVKLTLALLMTRFDANYSNDALALDDLTV
Ga0247817_10156168	Ga0247817_101561681	F034190	VPTPLHLYLGIGNRIILEAFSELFGQERLQSALTSITTIHSAGCSGKSDLYDLNGPEISKFIKKECSTSILAAAGATSTITDSVKASHSVLSRWLRQLHHALLHSGDWTATDIDAWRMAVDDIQRHWQAEACSKPFPQLHMLRHSVDFAERYRFLGRASEAQIESCHATLNALFHRQHRNQSGNVSERLRRSLADAALRAVQPFLQQ
Ga0247817_10164998	Ga0247817_101649982	F003605	MAVGDDANAAGLPLVPNTGEEGRVRWGAREINRTRDFIANVKSLIPIGKAAFRAAAGISQGTGDPTGGDDGDIYHKIV
Ga0247817_10183427	Ga0247817_101834271	F041209	YVLATETSAYSKRYDMIAVCTGDRVLVPTIFTPKERKDADVRGINRSMLLQFIDDVLAQAVEGLDRYPLTLVLDKATIHLDTDAIRQAFHDRGSQSIKDILIMPPNAAKRMSPLDNALFHDWKEECRSQCPMTARTIQRIMNDAWERMKPGPHYRHCGLTRSKDPYFDCPAPAVHRHVS
Ga0247817_10218999	Ga0247817_102189991	F027599	VLIDGVVNEAPVCKAVPPVEAANQESVPAEAVAANVTVPVPQRLPGVVPVIVGAALTVATTAVLAEVHPPLVTCT
Ga0247817_10218999	Ga0247817_102189992	F027599	VDAANQEIVPPEAVAANVTVPVPQREPGVVPVIEAPAVTVATTAVLAEVQPPFVVCT
Ga0247817_10283779	Ga0247817_102837792	F094045	MKYLSIFFTILFIWVAVILMAITRDDSAEIFQLYLAVMVSTLVLFLIGFAKK