Metagenome / Metatranscriptome Family F088925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088925
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	88 residues
Representative Sequence	MQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Number of Associated Samples	84
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.81 %
% of genes near scaffold ends (potentially truncated)	24.77 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland (11.927 % of family members)
Environment Ontology (ENVO)	Unclassified (34.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline) (18.349 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.25% β-sheet: 30.36% Coil/Unstructured: 63.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07366	SnoaL	4.59
PF04041	Glyco_hydro_130	4.59
PF04075	F420H2_quin_red	2.75
PF00773	RNB	1.83
PF10851	DUF2652	1.83
PF08241	Methyltransf_11	1.83
PF13335	Mg_chelatase_C	0.92
PF13188	PAS_8	0.92
PF00265	TK	0.92
PF00990	GGDEF	0.92
PF00498	FHA	0.92
PF13673	Acetyltransf_10	0.92
PF04203	Sortase	0.92
PF03553	Na_H_antiporter	0.92
PF13302	Acetyltransf_3	0.92
PF13612	DDE_Tnp_1_3	0.92
PF02163	Peptidase_M50	0.92
PF06736	TMEM175	0.92
PF13426	PAS_9	0.92
PF13847	Methyltransf_31	0.92
PF01343	Peptidase_S49	0.92
PF06210	DUF1003	0.92
PF00989	PAS	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	4.59
COG0557	Exoribonuclease R	Transcription [K]	1.83
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG4776	Exoribonuclease II	Transcription [K]	1.83
COG1435	Thymidine kinase	Nucleotide transport and metabolism [F]	0.92
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.92
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	80.73 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	73.39 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	72.48 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.92 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	72.48 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.92 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	72.48 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	0.92 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	72.48 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	0.92 %
Chloroflexi bacterium RBG_16_57_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_103306298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	871	Open in IMG/M
3300001213\|JGIcombinedJ13530_107752643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1163	Open in IMG/M
3300001213\|JGIcombinedJ13530_108917780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	595	Open in IMG/M
3300001279\|JGI20214J14112_1052188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	646	Open in IMG/M
3300001806\|JGI20216J20342_1033828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	513	Open in IMG/M
3300003432\|JGI20214J51088_10060849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2637	Open in IMG/M
3300003432\|JGI20214J51088_10081843	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300003432\|JGI20214J51088_10286329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_57_11	1132	Open in IMG/M
3300003432\|JGI20214J51088_10570618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	718	Open in IMG/M
3300003541\|JGI20214J51650_10045183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2914	Open in IMG/M
3300003541\|JGI20214J51650_10378418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	987	Open in IMG/M
3300003541\|JGI20214J51650_10520087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	835	Open in IMG/M
3300004007\|Ga0055476_10258790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300004014\|Ga0055456_10388552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	504	Open in IMG/M
3300004019\|Ga0055439_10256255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300004065\|Ga0055481_10090164	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1290	Open in IMG/M
3300004114\|Ga0062593_103205793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300004157\|Ga0062590_100151213	All Organisms → cellular organisms → Bacteria → Proteobacteria	1590	Open in IMG/M
3300004266\|Ga0055457_10049132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1025	Open in IMG/M
3300004463\|Ga0063356_103681718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	660	Open in IMG/M
3300004480\|Ga0062592_100678983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	891	Open in IMG/M
3300004780\|Ga0062378_10172310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	586	Open in IMG/M
3300004781\|Ga0062379_10142957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	595	Open in IMG/M
3300005093\|Ga0062594_101012344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	800	Open in IMG/M
3300005208\|Ga0069003_10112343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300005824\|Ga0074474_1602512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1649	Open in IMG/M
3300005826\|Ga0074477_1078670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	507	Open in IMG/M
3300005829\|Ga0074479_10656250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2301	Open in IMG/M
3300005829\|Ga0074479_10776888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	551	Open in IMG/M
3300005829\|Ga0074479_11160356	All Organisms → cellular organisms → Bacteria	9445	Open in IMG/M
3300005831\|Ga0074471_10836636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	884	Open in IMG/M
3300005833\|Ga0074472_10031357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	751	Open in IMG/M
3300005833\|Ga0074472_11002794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2015	Open in IMG/M
3300006033\|Ga0075012_10001235	All Organisms → cellular organisms → Bacteria	26672	Open in IMG/M
3300006417\|Ga0069787_10021635	All Organisms → cellular organisms → Bacteria	16162	Open in IMG/M
3300006755\|Ga0079222_11886762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	582	Open in IMG/M
3300006865\|Ga0073934_10033004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4917	Open in IMG/M
3300006954\|Ga0079219_10154557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1231	Open in IMG/M
3300007200\|Ga0103273_1163913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1603	Open in IMG/M
3300007775\|Ga0102953_1008278	All Organisms → cellular organisms → Bacteria	5203	Open in IMG/M
3300009009\|Ga0105105_10073206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1599	Open in IMG/M
3300009075\|Ga0105090_10156882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1418	Open in IMG/M
3300009075\|Ga0105090_10693755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300009085\|Ga0105103_10153734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1216	Open in IMG/M
3300009085\|Ga0105103_10901056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300009094\|Ga0111539_10166617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2576	Open in IMG/M
3300009095\|Ga0079224_100680044	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300009156\|Ga0111538_12899962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	600	Open in IMG/M
3300009165\|Ga0105102_10080098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1498	Open in IMG/M
3300009165\|Ga0105102_10647140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	588	Open in IMG/M
3300009168\|Ga0105104_10739079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	568	Open in IMG/M
3300009179\|Ga0115028_10191839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1283	Open in IMG/M
3300009179\|Ga0115028_10466607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	908	Open in IMG/M
3300009179\|Ga0115028_11252037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	614	Open in IMG/M
3300009506\|Ga0118657_10004250	All Organisms → cellular organisms → Bacteria	23579	Open in IMG/M
3300009506\|Ga0118657_10007408	All Organisms → cellular organisms → Bacteria	17690	Open in IMG/M
3300009506\|Ga0118657_10027205	All Organisms → cellular organisms → Bacteria	17476	Open in IMG/M
3300009873\|Ga0131077_10022059	All Organisms → cellular organisms → Bacteria	10810	Open in IMG/M
3300010397\|Ga0134124_10894224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	894	Open in IMG/M
3300010412\|Ga0136852_10319311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1528	Open in IMG/M
3300011340\|Ga0151652_11685187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300012533\|Ga0138256_10066919	All Organisms → cellular organisms → Bacteria	3536	Open in IMG/M
(restricted) 3300013126\|Ga0172367_10285686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	982	Open in IMG/M
3300014053\|Ga0119956_1011862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300014324\|Ga0075352_1214505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	576	Open in IMG/M
3300015371\|Ga0132258_11015395	All Organisms → cellular organisms → Bacteria	2096	Open in IMG/M
3300015371\|Ga0132258_11155176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1957	Open in IMG/M
3300015372\|Ga0132256_100739773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1100	Open in IMG/M
3300015373\|Ga0132257_101251277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	941	Open in IMG/M
3300022185\|Ga0079039_1460277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	954	Open in IMG/M
3300022368\|Ga0210346_119071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	546	Open in IMG/M
3300023071\|Ga0247752_1070763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300026095\|Ga0207676_10510024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1143	Open in IMG/M
3300026196\|Ga0209919_1113709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	770	Open in IMG/M
3300026282\|Ga0209053_1006982	All Organisms → cellular organisms → Bacteria	3216	Open in IMG/M
3300026362\|Ga0256801_1002817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	676	Open in IMG/M
3300026370\|Ga0256816_1024116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
3300026476\|Ga0256808_1044470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	641	Open in IMG/M
3300026501\|Ga0256806_1069983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	649	Open in IMG/M
3300026516\|Ga0209573_1075507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1227	Open in IMG/M
3300026535\|Ga0256867_10342573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300027657\|Ga0256865_1137633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	636	Open in IMG/M
3300027792\|Ga0209287_10203366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	755	Open in IMG/M
3300027851\|Ga0209066_10002039	All Organisms → cellular organisms → Bacteria	25451	Open in IMG/M
3300027871\|Ga0209397_10714197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300027887\|Ga0208980_10125516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1505	Open in IMG/M
3300027887\|Ga0208980_10732621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	557	Open in IMG/M
3300027890\|Ga0209496_10458608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	671	Open in IMG/M
3300027890\|Ga0209496_10600984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	594	Open in IMG/M
3300027907\|Ga0207428_10940219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300027917\|Ga0209536_100227772	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300027975\|Ga0209391_10116187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1174	Open in IMG/M
3300028647\|Ga0272412_1216615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	788	Open in IMG/M
3300028804\|Ga0268298_10161508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1256	Open in IMG/M
3300028804\|Ga0268298_10325320	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300029304\|Ga0119857_1000140	All Organisms → cellular organisms → Bacteria	49490	Open in IMG/M
3300029827\|Ga0134606_10085817	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300032144\|Ga0315910_11364760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300033414\|Ga0316619_11392094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	626	Open in IMG/M
3300033418\|Ga0316625_100552757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	925	Open in IMG/M
3300033418\|Ga0316625_101181309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	699	Open in IMG/M
3300033482\|Ga0316627_100234746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1448	Open in IMG/M
3300033482\|Ga0316627_100580724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1016	Open in IMG/M
3300033483\|Ga0316629_10055456	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300033488\|Ga0316621_11065666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	605	Open in IMG/M
3300033521\|Ga0316616_102486715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	694	Open in IMG/M
3300033521\|Ga0316616_102862856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	650	Open in IMG/M
3300033557\|Ga0316617_101701724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	642	Open in IMG/M
3300033557\|Ga0316617_101932237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	605	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.49%
Host-Associated	Host-Associated	8.26%
Engineered	Engineered	8.26%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	59.63%
Terrestrial	Environmental → Terrestrial	23.85%
Plants	Host-Associated → Plants	8.26%
Wastewater	Engineered → Wastewater	7.34%
Bioreactor	Engineered → Bioreactor	0.92%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	27.52%
Soil	Environmental → Terrestrial → Soil	23.85%
Marine	Environmental → Aquatic → Marine	22.94%
Sediment	Environmental → Aquatic → Sediment	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.59%
Activated Sludge	Engineered → Wastewater → Activated Sludge	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.67%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	2.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Unclassified	Engineered → Bioreactor → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Marine → Wetlands	20.18%
Sediment	Environmental → Aquatic → Freshwater → Sediment	14.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.01%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.26%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	2.75%
Lake	Environmental → Aquatic → Freshwater → Lake	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Pond	Environmental → Aquatic → Freshwater → Pond	0.92%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.92%
Coastal	Environmental → Aquatic → Marine → Coastal	0.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.92%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	14.68%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	14.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.42%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.59%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor	1.83%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.92%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.92%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.92%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge	0.92%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	11.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	9.17%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	7.34%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	5.50%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	2.75%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.83%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	1.83%
Watersheds	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Watersheds	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Wastewater Treatment	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment	1.83%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.92%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Contaminated Water	Environmental → Aquatic → Freshwater → Pond → Sediment → Contaminated Water	0.92%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.92%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.92%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.92%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.92%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.92%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.92%
Enhanced Biological Phosphorus Removal Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor	0.92%
Anaerobic Bioreactor	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Anaerobic Bioreactor	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001279	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300001806	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004007	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordC_D2	Environmental	Open in IMG/M
3300004014	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004065	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004780	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh	Environmental	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005208	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2	Environmental	Open in IMG/M
3300005824	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBC	Environmental	Open in IMG/M
3300005826	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.186_BBA	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005831	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006033	Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15	Environmental	Open in IMG/M
3300006417	Combined Assembly of Gp0110018, Gp0110022, Gp0110020	Engineered	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007200	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site B) 9 sequencing projects	Environmental	Open in IMG/M
3300007775	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012533	Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG	Engineered	Open in IMG/M
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental	Open in IMG/M
3300014053	Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300022185	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022368	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.454 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026196	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D2_MG (SPAdes)	Environmental	Open in IMG/M
3300026282	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_7/15/2010_ DNA (SPAdes)	Engineered	Open in IMG/M
3300026362	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C6	Environmental	Open in IMG/M
3300026370	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5	Environmental	Open in IMG/M
3300026476	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR6	Environmental	Open in IMG/M
3300026501	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 PR4	Environmental	Open in IMG/M
3300026516	Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA (SPAdes)	Engineered	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027657	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 HiSeq	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027851	Freshwater microbial communities in response to fracking from Pennsylvania, USA - Allegheny Zone_MetaG_DW_15 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028647	Metatranscriptome of activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300028804	Activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt	Engineered	Open in IMG/M
3300029304	Anaerobic bioreactor microbial community of Freshwater lake and wastewater samples from Australia - AOM-metagenome-Illumina	Engineered	Open in IMG/M
3300029827	Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1033062981	3300001213	Wetland	MQERKCSKCGSANVYKNVGNNWQQNGVVIQTIGTNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQTTLEESIQASNNWIKAL*
JGIcombinedJ13530_1077526432	3300001213	Wetland	MQDRKCSKCGSANVYQNVGDNWLHDGVVIQTIADNRFNDLFQTNAFLCLDCRNPDIEVLGSTTMYGKQTTLAESIRASNNWIKASQ*
JGIcombinedJ13530_1089177801	3300001213	Wetland	MQDRKCSKCGSVNVYKNVGNTWHADGLVIQTMGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMYGKQK
JGI20214J14112_10521882	3300001279	Wetland	WVDRRAVKEIPMQDRKCSKCGSTNVYRNLGNNWLQDGVVLQTIGENRFNDLFQTNAFLCLDCRNLDIEVLGTATMYGKQSSLAESVKASNNWIKA*
JGI20216J20342_10338282	3300001806	Wetland	MQERKCSKCGSANVYTNVGNHWQQNGVVLQTIGENRFTDLFQTNAFLCLDCRNLDIEVLETTTMYGKQTTLAESIQGSKNWVKA*
JGI20214J51088_100608492	3300003432	Wetland	MQDRKCSKCGSANVYQNVGNNWLHDGAVIQAIGENRFNDLFQTNAFLCLDCRNLDIEVSGTTTMYGKQTTLAESIQASENWTKAS*
JGI20214J51088_100818432	3300003432	Wetland	MQDRKCSKCGSTNVYRNLGNNWLQDGVVLQTIGENRFNDLFQTNAFLCLDCRNLDIEVLGTATMYGKQSSLAESVKASNNWIKA*
JGI20214J51088_102863291	3300003432	Wetland	MQERKCSKCGSANVYRNVGNTWQQNGVVIQTMGANRFNDLFQTNAFLCLDCRNLDIEVLETTTKYGKQTTLAESIQASKNWIKAS*
JGI20214J51088_105706181	3300003432	Wetland	MQDRKCSKCGSVNVYTNVGNDWHQDGVVIQVLGENRFIDLFHTDAFLCLDCRNLEIQVLGTSTMYGKQITLAESIKASRNWIKAS*
JGI20214J51650_100451833	3300003541	Wetland	MHDRKCSKCGSTNVYQNVGNNWLHNGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQTSLAESIQASNNWIKA*
JGI20214J51650_103784181	3300003541	Wetland	LQERKCSKCGSTNVYTNVGTTWQQNGVVIQTIGNNRFSDLFQTNAFLCLDCRNLDIEVLETTTMYGKQNTLAESIQTSRNWIKA*
JGI20214J51650_105200871	3300003541	Wetland	MQSYVSSGKEIRMQDRKCSKCGSVNVYTNVGNDWHQDGVVIQVLGENRFIDLFHTDAFLCLDCRNLEIQVLGTSTMYGKQITLAESIKASRNWIKAS*
Ga0055476_102587901	3300004007	Natural And Restored Wetlands	MQERKCSKCGSVNVYKNTSNNWHHDGVVIQMVAAGSFHDLFQTEAFLCLDCRNLEIKVAETSTMYGKQKMLVDTIKASNNWVKASN*
Ga0055456_103885521	3300004014	Natural And Restored Wetlands	MQERKCSKCGSTNVFKNTSNNWHKDGLVLQMIAEDSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKKLNDTIQASNNWVKV*
Ga0055439_102562551	3300004019	Natural And Restored Wetlands	MQERKCSKCGSANVYENTSNNWHKDGVVIQMVAEGSFHDLFQTEAFPCLDCRNLEIQVAETSRMYGKQKMLVDTMQAGNNWV
Ga0055481_100901643	3300004065	Natural And Restored Wetlands	MQERKCSKCGSINVYKNTSNNWHQDGLVLQTIAEGSFNDLFQTEAFLCLNCRNLEIQVAETSTMYGKQKKLINTIQASNNWVKA*
Ga0062593_1032057931	3300004114	Soil	MQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKASQDVHR*
Ga0062590_1001512132	3300004157	Soil	MRHNVCTVKEIHMQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKASQDVHR*
Ga0055457_100491322	3300004266	Natural And Restored Wetlands	MQERKCSKCGSANVFMNTNNSWHKDGLVLQMIAEGSFHDLFQIEAFLCLDCRNLEIQVAETSTMYGKQK
Ga0063356_1036817181	3300004463	Arabidopsis Thaliana Rhizosphere	MQDRKCSKCGSTNVYQNVGDNWLHDGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTLYGKQSSLAESIKASKNWIKA*
Ga0062592_1006789831	3300004480	Soil	MDLQAGIQTRSKKIMRHNVCTVKEIHMQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWTKASQDVHR*
Ga0062378_101723101	3300004780	Wetland Sediment	MQERKCSKCGSVNVYKNMSNNWHQDGLVIQMLAVDSFPALFQTEAFLCVDCRNLELQVLETSTMYGQQKTLAETIQASNNWRKA*
Ga0062379_101429571	3300004781	Wetland Sediment	KCSKCGSVNVYKNTSNNWHQDGLVIQMLAVDNFPALFQTEAFLCIDCRNLELQVLETSTMYGQQKTLAETIQASNNWRKA*
Ga0062594_1010123442	3300005093	Soil	MDLQAGIQTRSKKIMRHNVCTVKEIHMQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKASQDVHR*
Ga0069003_101123431	3300005208	Natural And Restored Wetlands	VCPEMAVWVDRRAVKEIPMQDRKCSKCGSTNVYRNLGNNWLQDGVVLQTIGENRFNDLFQTNAFLCLDCRNLDIEVLGTATMYGKQSSLAESVKASNNWIKA*
Ga0074474_16025122	3300005824	Sediment (Intertidal)	MQERKCSKCGSTNVYKNMSNNWHQDGIVLQMIAVDSFHDLFQTEAFLCLDCRHLDIQVLETSTMHGKQKTLIDTVQASNNWRKA*
Ga0074477_10786702	3300005826	Sediment (Intertidal)	IPMQERKCSRCGSTNVYKNMSNNWHQDGIVLQMIAVDSFHDLFQTEAFLCLDCRHLDIQVLETSTMHGKQKTLIDTVQASNNWRKA*
Ga0074479_106562502	3300005829	Sediment (Intertidal)	MQDRKCAKCGSVNVYRSVGSNWHQAGLVIQTVGGGRFNDLFQTEAFLCVDCRNLDIQVLEASTMYGTQKTLTESIQASSNWRKA*
Ga0074479_107768881	3300005829	Sediment (Intertidal)	RIVKEIHMQNRKCSKCGSVNVYKNVGNNWHQDGVVIQTVGGDSFNDLFQTEAFLCLDCRNLDIHVLETTTIYGKQKTLVESIQASRNWIKV*
Ga0074479_1116035610	3300005829	Sediment (Intertidal)	MQERKCSKCGSVNVYKSLGDDWQRGGLAIQLTAARSFPALFQTEAFLCLDCRNLEIQVSETSTLYGEQKILIDTIPTSNNWVKA*
Ga0074471_108366363	3300005831	Sediment (Intertidal)	VYKSIGNNWHQDGVVLQMIAENSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKALTDTVQASNNWVKA*
Ga0074472_100313572	3300005833	Sediment (Intertidal)	MQNRKCSKCGSINVCKNVGNDWHQDGVVIQTVGGDSFNDLFQTEAFLWLDCRDLDIKELETTTLYGKQKNLAESIQASRNWVKV*
Ga0074472_110027943	3300005833	Sediment (Intertidal)	MQERKCSKCGSVNVYKSVGNNWHQDGLVIQTVGGGTFNNLFQTEAFLCVDCRNLDIQVLEASTMYGKQKTLAESLQISSNWRKV*
Ga0075012_100012351	3300006033	Watersheds	MQDRKCTKCGSRNVYKNTGKNWYQDGIVLQMIAVDSFTYRFETEAFLCLDCRNLEILVSETNTTYGDQKTLIEAVQNSNNWAKV*
Ga0069787_100216355	3300006417	Enhanced Biological Phosphorus Removal Bioreactor	MQERKCSKCGSVNVYKNTSNNWHKDGVVIQMIADDSFNDLFQTEAFLCLDCRNLDIQVAETSTMYGEQKTLVDTIQASNNWIKV*
Ga0079222_118867621	3300006755	Agricultural Soil	MQNRKCSKCGSANVYTNVDNNWHQDGIVIQTILGDSFNDLFQTDALLCLDCGNLDIQVLKTTTRYGKQKT
Ga0073934_100330042	3300006865	Hot Spring Sediment	MQDRKCSRCGSGNIYKSVSNNWLQDGVVIQTMGENRFNDLFQTNAFLCLDCRNLDIEVLETTTLYGKQKTLAESIQSSRNWIKVS*
Ga0079219_101545571	3300006954	Agricultural Soil	KEIHMQDRKCSNCGSVNVYKNVGNNWLQDGVVIQTIGENRFNDLFQTNAFLCLDCRNLDIEVLETTTLYGKQKTLTESIQASRNWIKVA*
Ga0103273_11639133	3300007200	Freshwater Lake	MQDRKCSKCGSHNVYKNTGKNWHQDGVVLQMIAVDSFTYRFETEAFLCLDCRYLEILVSETNTMFGDQKTLIEAVQNSNNWAKA*
Ga0102953_10082782	3300007775	Soil	MGRVGLRHWKEIPVQERKCSKCGSVNVYKNTSNNWHQDGVVLQMLAVGSFHDLFQTEAFLCLDCRNLDIQVAETSTMYGKQKPLVDTIQASNNWVKA*
Ga0105105_100732062	3300009009	Freshwater Sediment	MQPDLSRWAGRAGLSSWKEIHMQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA*
Ga0105090_101568822	3300009075	Freshwater Sediment	MQPNLSRWAGRAGLSNWKEIPMQERKCSKCGSVNVYKNTGNDWHQDGLVLQMLAVDNFPALFQTEAFLCVDCRNLEIQVLETSTVYGKQKTLIETIQASNNWRKA*
Ga0105090_106937551	3300009075	Freshwater Sediment	MQPDLSRWAGRVGLSSWKEIHMQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA*
Ga0105103_101537342	3300009085	Freshwater Sediment	MQPNLSRWAGRAGLSNWKEIPMQERKCSKCGSVNVYKNTSNDWHQDGLVLQMLAADNFPALFQTEAFLCVDCRNLEIQVLETSTVYGKQKTLTETIQASNNWRKA*
Ga0105103_109010561	3300009085	Freshwater Sediment	MQPDLSRWAGRAGLSSWKEIHMQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNW
Ga0111539_101666173	3300009094	Populus Rhizosphere	MDLQAGNQTRSKKIMRHNVCTEKEIHMQDRKCSKCGSVNVYRNVGNSWYQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQMTLAESIQASRNWTKAS*
Ga0079224_1006800443	3300009095	Agricultural Soil	VYKNTGKNWHQDGIVLQMIAVDSFTYRFETEAFLCLDCRYLEIRVMEANTVYGEHKTLTEAVETSNNWVKV*
Ga0111538_128999623	3300009156	Populus Rhizosphere	KVYRNVGNNWREDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQMTLTESIQASRNWIKAS*
Ga0105102_100800982	3300009165	Freshwater Sediment	MQPNLSRWAGRAGLSNWKEIPMQERKCSKCGSVNVYKNTGNDWHQDGLVLQMLAVDNFPALFQTEAFLCVDCRNLEIQVLETSTVYGKQKTLTETIQASNNWRKA*
Ga0105102_106471401	3300009165	Freshwater Sediment	LVSNDTLISRKSYMQPDLSRWAGRAGLSSWKEIHMQERKCSKCGSVNVYKNTGNDWHQDGVVLQMIAVCSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA*
Ga0105104_107390791	3300009168	Freshwater Sediment	RWAGRAGLSNWKEIPMQERKCSKCGSVNVYKNTSNDWHQDGLVLQMLAVDNFPALFQTEAFLCVDCRNLEIQVLETSTVYGKQKTLTETIQASNNWRKA*
Ga0115028_101918391	3300009179	Wetland	MQPDLSRWAGRAGLSSWKEIHMQERKCSKCGSVNVYKNTSNNWHQDGVVLQMISVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA*
Ga0115028_104666071	3300009179	Wetland	MAVRVGKRDVKEIPMQDRKCSKCGSTNVYQNVGDNWLHDGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQTTLTEAIQASNNWIKA*
Ga0115028_112520372	3300009179	Wetland	MKEIPMQDRKCSKCGSTNVYQNVGNNWLHDGVVIQTIGENRFNDLFQTNAFLCLDCRKLDIEVLGTTTNYGKQSSLAESIKTSKNWIKA*
Ga0118657_1000425034	3300009506	Mangrove Sediment	MQERKCSKCGSINVYKNTSNNWHQDGLVLQTIAEGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKKLIDTIQASNNWVKA*
Ga0118657_1000740822	3300009506	Mangrove Sediment	MQERKCSKCGSANVYKNTSNNWHKDGLVLQMIAVGSFHDLFQTEAYLCLDCRNLEIQVAETSTMYGKQKTLINTIQACNNWVKA*
Ga0118657_1002720514	3300009506	Mangrove Sediment	MQERKCSKCGSINVYKNTSNNWHQHGLVLQTIAEGSFHDLFQTEAFLCLDCRNLEIQVSETSTMYGKQKKLIDTIQASNNWVKA*
Ga0131077_100220599	3300009873	Wastewater	MQERKCSKCGSANVYKNASNNWHKDGLILQMIAEASFPDLFQTEAFLCLDCRNLEIQVAGTSTMYGKQKKLIDTIQASNNWVKA*
Ga0134124_108942241	3300010397	Terrestrial Soil	MQDRKCSKCGSGNVYKNAGSNWLQDGVVVQTIGEDRFNDLFQTNAFLCLDCRHLEFEVLETTTLYGKQKTLTESIQTSRNWIKA*
Ga0136852_103193112	3300010412	Mangrove Sediment	MQERKCSKCGSANVYKNTSNNWHKDGLVLQTIAKDSFHDLFQTEAYLCLDCRNLEIQVAETSTMYGRQKTLIDTVQASNNWVKA*
Ga0151652_116851872	3300011340	Wetland	MVVRVGRRAVKEIPMHDRKCSKCGSTNVYQNVGNNWLHNGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQSSLVESIKASNNWIKA*
Ga0138256_100669193	3300012533	Active Sludge	MQEIKCSKCGSVNVYKNTSNNWHKDGLVLQMLVADSFPTLFQTEAFLCLDCRNLDIQVLETSTMYGKQITLADSIQASNNWRKA*
(restricted) Ga0172367_102856862	3300013126	Freshwater	MKDQKCSKCGSHNVYKNTGKNWHQDGVVLQMIAVDSFTYRFETEAFLCLDCRYLEILVSETNTMFGDQKTLIEAVQNSNNWAKA*
Ga0119956_10118621	3300014053	Contaminated Water	MQERKCSKCGSVNVYKSIGNNWHQEGIILQIIAEDSFHDVFQTEAFLCLDCRNLEIQVMETSTMYGKQKSLVDTVQASNNWVKA*
Ga0075352_12145051	3300014324	Natural And Restored Wetlands	MRHDVGTAKEIHMQDRKCSKCGSVNVYKNVDNNWHQDGLVIQMMGDNRFNDLFQTDAFLCLDCRNLEFQVLETTTMYGKQITLAESIQASRNWIKAS*
Ga0132258_110153952	3300015371	Arabidopsis Rhizosphere	MKRQDGMAGQISLGTVKEIQMENRKCSKCGSANVYRNVDNNWHQDGIVIQTMSGHSFNDLFQTEAFLCLDCRNLDIQVLETTTLYGKQKTLVESIQASRNWIRV*
Ga0132258_111551763	3300015371	Arabidopsis Rhizosphere	MALQAGNQTRSKKIMRHNVSTVKEIHMQDRKCSKCGSVNVYRNVGNSWYQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKAS*
Ga0132256_1007397732	3300015372	Arabidopsis Rhizosphere	MRHNVSTVKEIHMQDRKCSKCGSVKVYKNVDNNWLQDGVVIQTMGDNRFNDLFQTNAFLCLDCRNLDIEVLETTTLYGKQKTLAESIQTSRNWIKVS
Ga0132257_1012512771	3300015373	Arabidopsis Rhizosphere	NRKCSKCGSANVYRNVDNNWHQDGIVIQTMSGHSFNDLFQTEAFLCLDCRNLDIQVLETTTLYGKQKTLVESIQASRNWIRV*
Ga0079039_14602772	3300022185	Freshwater Wetlands	MVVRVGIRTVKEILMQDRKCSKCGSTNVYQNVGNNWLHNGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQITLAESIQASKNWIKA
Ga0210346_1190711	3300022368	Estuarine	MGRAGLGDWKEIPMQERKCSKCGSTNVYKNMSNNWHQDGIVLQMIAVDSFHDLFQTEAFLCLDCRHLDIQVLETSTMHGKQKTLIDTVQASNNWRKAXMG
Ga0247752_10707632	3300023071	Soil	MRHNVCTVKEIHMQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKASQDVHR
Ga0207676_105100242	3300026095	Switchgrass Rhizosphere	MQDRKCSKCGSVNVYRNVGNNWHQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQITLAESIQASRNWIKASQDVHR
Ga0209919_11137092	3300026196	Soil	VQERKCSKCGSVNVYKNTSNNWHQDGVVLQMLAVGSFHDLFQTEAFLCLDCRNLDIQVAETSTMYGKQKPLVDTIQASNNWVKA
Ga0209053_10069821	3300026282	Wastewater Treatment	MQDQKCSKCGSRNVYKNTGKNWCQDGIVLQMIAVDRFTYQFKTEAFLCLDCRYLEIRAAETNTVYGDHKTLIEAVEASNNWAKVSV
Ga0256801_10028172	3300026362	Sediment	MQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVDSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKVLVDTIKASNNWVKA
Ga0256816_10241161	3300026370	Sediment	MKEIPMQDRKCSKCGSINVYKNTSNNWHQDGLVIQMLAVDSFPALFQTEAFLCLDCRNLELQVLETSTMYGQQKSLVETIQASNNWR
Ga0256808_10444702	3300026476	Sediment	VGSSSWKVILMQERKCSKCGSANVYKNTSNNWHQDGLVLQMIAVDSFHDLFQTEAFLCLDCRNLEIQVAETSTMYAKQKALVDTIKASKNWAKA
Ga0256806_10699831	3300026501	Sediment	MQERKCSKCGSVNVYKNTSDNWHQDGLVLQMIAVDSFHDLFQTEAFLCLDCRNLEIKVAETSTMYGKQKVLVDTIKASNNWVKA
Ga0209573_10755072	3300026516	Wastewater Treatment	MQERKCSKCGSVNVYKNTSNNWHKDGVVIQMIADDSFNDLFQTEAFLCLDCRNLDIQVAETSTMYGEQKTLVDTIQASNNWIKV
Ga0256867_103425732	3300026535	Soil	MQERRCSKCGSANVYKNTSNNWHKDGVVLQMIAKGSFHDLFQTEAFLCLDCRNLEIQVAETSMMYGMQKTLVDTIQASNNWVKA
Ga0256865_11376331	3300027657	Soil	MLLQAGRVRLCPTKGIPIQERKCSRCGSVNVYKTTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGNQKSLVDTIQASGNWAKA
Ga0209287_102033662	3300027792	Freshwater Sediment	MQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Ga0209066_1000203922	3300027851	Watersheds	MQDRKCTKCGSRNVYKNTGKNWYQDGIVLQMIAVDSFTYRFETEAFLCLDCRNLEILVSETNTTYGDQKTLIEAVQNSNNWAKV
Ga0209397_107141971	3300027871	Wetland	MQNRKCSKCGSVNVYKNVGNTWHQDGVVIQTIGENRFNDLFQTNAFLCLDCRKLDIEVLGTTTNYGKQSSLAESIKTSKNWIKA
Ga0208980_101255163	3300027887	Wetland	MQDRKCSKCGSANVYQNVGDNWLHDGVVIQTIADNRFNDLFQTNAFLCLDCRNPDIEVLGSTTMYGKQTTLAESIRASNNWIKASQ
Ga0208980_107326212	3300027887	Wetland	MQERKCSKCGSANVYTNVGNHWQQNGVVLQTIGENRFTDLFQTNAFLCLDCRNLDIEVLETTTMYGKQTTLAESIQGSKNW
Ga0209496_104586082	3300027890	Wetland	MQDRKCSKCGSTNVYQNVGDNWLHDGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQTTLTEAIQASNNWIKA
Ga0209496_106009841	3300027890	Wetland	YKNTSNNWHQDGVVLQMISVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Ga0207428_109402191	3300027907	Populus Rhizosphere	MQDRKCSKCGSVNVYRNVGNSWYQDGVVIQTLGENRFNDLFQTDAFLCLDCRNLEIQVLETSTMFGKQMTLAESIQASRNWTKAS
Ga0209536_1002277722	3300027917	Marine Sediment	MQERKCSKCGSAKVYKNTSNNWHKDGLVLQMIAEGSFPALFQTEAFLCLDCRNLEIQVAETSTMYGKQKKLIDTIQASNNWVKA
Ga0209391_101161872	3300027975	Freshwater Sediment	MQERKCSKCGSVNVYKNTGNDWHQDGLVLQMLAADNFPALFQTEAFLCLDCRNLEIQVLETSTVYGKQKTLTETIQASNNWRKA
Ga0272412_12166152	3300028647	Activated Sludge	MQDRKCSKCGSRNVYKNTGKNWHQDGIVLQTIAVDSFTYRFETEAFLCLDCRYLEILVMESNTVYGEHKTLIEAVEASNNWVKV
Ga0268298_101615082	3300028804	Activated Sludge	MCTKEIPMQERKCSKCGSLNVFKNTSNNWHKDGVILQMLAEDNFPALFQTQAFLCIDCRHLDIQVFETSTMYGNQKTLAEAVRSSNNWVKA
Ga0268298_103253202	3300028804	Activated Sludge	KNTGKNWHQDGIVLQTIAVDSFTYRFETEAFLCLDCRYLEILVMESNTVYGEHKTLIEAVEASNNWVKV
Ga0119857_100014039	3300029304	Anaerobic Bioreactor	MQERKCSKCGSANVYKNTSNNWHKDGIVLQMIAKDSFHDLFQTEAFLCLDCRNLELQVAETSMMYGKQKTLVDTIQASNNWVKA
Ga0134606_100858172	3300029827	Marine Sediment	MQERKCSKCGSANVYKNTSNNWHKDGLVLQMIAEGSFPDLFQTEAFLCLDCRNLEIQVAEISTMYGKQKMLIDTIQASNNWVKA
Ga0315910_113647602	3300032144	Soil	MQERKCSKCGSANVYKNTSNNWHKDGVVLQMIAKGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKALVDTIQASNNWVKA
Ga0316619_113920942	3300033414	Soil	MQERKCSKCGSVNVYKNTSNNWHQDGVVLQMISVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Ga0316625_1005527572	3300033418	Soil	MQDRKCSRCGSVNVYKSVDNNWYQDGLVIQTVGGGSFNDLFQTEAFLCMDCRNLDIQVKEATTMYGTQKTLVEAVQASNNWSKA
Ga0316625_1011813091	3300033418	Soil	MQDRTCSKCGSKNVYKNAGKNWYQDGLVLQMIAVGSFTYHFETEAFLCIDCRHLEIQVSETNTMYGNQKTLTDAIQNSTNWVKA
Ga0316627_1002347461	3300033482	Soil	MQDRKCSKCGSVNVYKNVGNTWHQDGVVIQTIGGDSFTDLFQTEAYLCLDCRNLEIKVLETTTLYGQQKTLTESIQASRNWVKVG
Ga0316627_1005807242	3300033482	Soil	MQDRKCSKCGSVNVYKSVGNDWLQDGVVIQTTSENRFKDLFQTNAFLCLDCRNLEIEVLETTTLYGKQKTLAESIRTSRNWVKVS
Ga0316629_100554564	3300033483	Soil	NVYKNTSNNWHQDGVVLQMISVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Ga0316621_110656661	3300033488	Soil	SKCGSVNVYKNTSNNWHQDGVVLQMISVGSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKTLVDTVQASNNWVKA
Ga0316616_1024867151	3300033521	Soil	MKEIPMQDRKCSKCGSANVYQNVGNNWLHDGVVIQTIGENRFNDLFQTNAFLCLDCRNLDIEVLGTTTMYGKQITLAESIQASKNWIKA
Ga0316616_1028628561	3300033521	Soil	MQDRKCSRCGSVNVYKSVDNNWYQDGLVIQTVGGGSFNDLFQTEAFLCMDCRNLDIQVKEATTMYGTQKTLVEAVQA
Ga0316617_1017017241	3300033557	Soil	MQDRKCSQCGSVNVYKNVGNNWHQDGVVIQTVGGDSFNDLFQTEAFLCLDCRHLDIQVLETTTMYGKQRTLSESIQASRNWVKVG
Ga0316617_1019322372	3300033557	Soil	MQDRKCSKCGSTNVYQNVGNNWLHNGVVIQTIGDNRFNDLFQTNAFLCLDCRNLDIEVLETTTMYGKQTALAESIQASKNWIKAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters