3300026516: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300026516
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103144 | Ga0209573
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - TNR Reactor_6/25/2014_ DNA (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 615579895
• Sequencing Scaffolds: 13
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	1
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006745	Metagenome	365	Y
F014467	Metagenome / Metatranscriptome	263	Y
F015834	Metagenome	251	Y
F016391	Metagenome / Metatranscriptome	247	Y
F026170	Metagenome	199	Y
F034766	Metagenome / Metatranscriptome	174	Y
F048673	Metagenome / Metatranscriptome	148	Y
F049152	Metagenome / Metatranscriptome	147	Y
F052685	Metagenome / Metatranscriptome	142	Y
F058255	Metagenome	135	Y
F061953	Metagenome / Metatranscriptome	131	Y
F084316	Metagenome / Metatranscriptome	112	Y
F088924	Metagenome	109	Y
F088925	Metagenome / Metatranscriptome	109	Y
F104545	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209573_1000052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	327050
Ga0209573_1000292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	116139
Ga0209573_1000438	All Organisms → cellular organisms → Bacteria	90281
Ga0209573_1000509	All Organisms → cellular organisms → Bacteria	80784
Ga0209573_1000553	All Organisms → cellular organisms → Bacteria	75806
Ga0209573_1001139	All Organisms → cellular organisms → Bacteria	43587
Ga0209573_1001334	All Organisms → cellular organisms → Bacteria	39379
Ga0209573_1002178	All Organisms → cellular organisms → Bacteria	26244
Ga0209573_1002876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	20456
Ga0209573_1014122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4856
Ga0209573_1017604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	4012
Ga0209573_1075507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1227
Ga0209573_1085422	All Organisms → cellular organisms → Bacteria → PVC group	1116

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209573_1000015	Ga0209573_1000015435	F088924	MTCDDRPIVKQIGFACLASSALLSVFSRTTDKSVCVTLSAFLCFLCGFTQAAEPLKLLFAGSSSMYWNDLPREVAKIVDGKIAGHIGEQVIPEAVGRSGSDIRVYLEPGFNRYEYGVKPGQSFLDKIATEKPDIVPMMVVCRFIMGDDAPKNGNPDHATSITRYCEAIRAAGGEPMFYEMGWGKTEREAEGRQRILELAKKNQITLFAPCSTAWARVYAEKPDLALQHPKDNAHPGDAGHFLNLACFYAALTRESPVGKLPRTFHVWPHGKYDAYEAKLATFQPDAYQAAMAKWMRKHMAMNQTGTLDEETATYLETVAWETWNDVSKRLQVR
Ga0209573_1000052	Ga0209573_1000052227	F084316	VGKFEVGDRVIVNEGDFKGDRGTITDKDLIGDEIKVALEEDGREIDTHEAHVSLLERED
Ga0209573_1000292	Ga0209573_100029265	F016391	MSDSYLRYTDLATAIQLARANGMTTAQIIRALTGSMTHADALKLARMAAPLLDISVQMFMQLRKNEA
Ga0209573_1000438	Ga0209573_100043829	F026170	MPGMARERTEGEQKAVETILRALAHNLQRLQEEAEMQALRGEVDPGVQKGLAMALRETNNMLPRRKRVK
Ga0209573_1000509	Ga0209573_100050956	F052685	MGPQRGTIVKRTQTARVRKALDYVKRRLKLDLEFVVQPGEVHDQFGLLDIERSDRGTEDRKVWIVSYDPELVSQESLAALRRHAFHEVLHALTWPLFDEAEAAIRRVPDSTLRKELMDRSIDARENVVYELERKIGPLCFPSLPWVDP
Ga0209573_1000553	Ga0209573_100055342	F061953	MSGPVWKLLKMPGTCDSCGESAAELLSVGTVVDYAFRPEYRFCRSCYDRYGGRHDDLHQKAVAEQQLPPLISRPDSLEDVPE
Ga0209573_1001139	Ga0209573_10011396	F048673	MRTFAVLLILVAIAASQPHHWLAVCMAAIAHCLGR
Ga0209573_1001334	Ga0209573_100133417	F014467	MRKTTGTVIVAVAALALGSSALATMEIQKEYKAKDPKASCASCHVDKMPKKEKHEMNDFGKKVLEAKGKDGKIDWAKVPAAK
Ga0209573_1001334	Ga0209573_100133419	F014467	MKKTTTAIAATLAALALGSSALATMELQKEYKAKDTKANCASCHTEKMPKKDKADLNDLGKKVKDAKGADGKIDWTKVPAPAAK
Ga0209573_1002178	Ga0209573_10021781	F058255	VKGEPLVQLDLFSDPPLTREELRSDQKSLQALYDALAEGYRLPPARVELSSRRATGGVIQYGPPHVIRVSAHMSAADRRQTLLHETAHAICHDRWGVDEGHSSRFWEIARELGVTRKSAPETDRLATIRARNARYTYRCLGCAEEWTRRSPFGRARLCASCEGKGRPSRLILVRRPKRAARLKR
Ga0209573_1002876	Ga0209573_10028768	F104545	MTAKDIRVGKDQPIRTGTAQHARQRIVGQQAGIDCDAATRAVRVPMGSGQPDDVEPVDTILRPVGRRKTFRDVLASIGRVRQRLEMARVPKPYQHAVIKVAVQKSDR
Ga0209573_1014122	Ga0209573_10141223	F034766	MPDAPRKYLMITPDQVRSARRFWPQVSDKTWCLVFRRGEEPMVLNKAPHRGVGFVTVEVPTPEQTKEGMYYRRDMDVLILVAGETDLVRV
Ga0209573_1017604	Ga0209573_10176043	F006745	MRTSRQATSASSAVVIYVVILVAFQVFLLTVAVEAFAADDEPLAWATAGVSVVLAAGSAVLLRYLRP
Ga0209573_1045983	Ga0209573_10459831	F049152	VTAEADPLFADAPRNEGLLHQAAEQIAEMFGVHRQLDKLLYESACHVGGVEFESIFNPIPAEILSAKPRPDAINHDQAFLRSSPLSAA
Ga0209573_1075507	Ga0209573_10755072	F088925	MQERKCSKCGSVNVYKNTSNNWHKDGVVIQMIADDSFNDLFQTEAFLCLDCRNLDIQVAETSTMYGEQKTLVDTIQASNNWIKV
Ga0209573_1085422	Ga0209573_10854222	F015834	MSAPTRIEREHYQKLVGRQILAIYWDELEGHALPVLVLSGRDPDGRAATTTVLADPEGNAPGHLDHCL