Sample 3300026370

Overview

Basic Information
IMG/M Taxon OID	3300026370 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133548 \| Gp0296349 \| Ga0256816
Sample Name	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	86082388
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.	1
Not Available	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → freshwater marsh → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline)

Location Information
Location	USA: Georgia
Coordinates	Lat. (^o)	31.3377	Long. (^o)	-81.4644	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F007558	Metagenome / Metatranscriptome	349	Y
F013597	Metagenome / Metatranscriptome	270	Y
F016394	Metagenome	247	Y
F031548	Metagenome / Metatranscriptome	182	Y
F036032	Metagenome / Metatranscriptome	171	Y
F050467	Metagenome	145	Y
F050471	Metagenome / Metatranscriptome	145	Y
F052686	Metagenome / Metatranscriptome	142	Y
F055831	Metagenome / Metatranscriptome	138	Y
F056185	Metagenome	138	Y
F058543	Metagenome	135	N
F060457	Metagenome / Metatranscriptome	133	Y
F060458	Metagenome / Metatranscriptome	133	Y
F063813	Metagenome / Metatranscriptome	129	N
F071376	Metagenome	122	Y
F077972	Metagenome	117	Y
F080090	Metagenome / Metatranscriptome	115	Y
F088925	Metagenome / Metatranscriptome	109	Y
F097602	Metagenome / Metatranscriptome	104	Y
F102135	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F007558

Metagenome / Metatranscriptome

349

F013597

Metagenome / Metatranscriptome

270

F016394

Metagenome

247

F031548

Metagenome / Metatranscriptome

182

F036032

Metagenome / Metatranscriptome

171

F050467

Metagenome

145

F050471

Metagenome / Metatranscriptome

145

F052686

Metagenome / Metatranscriptome

142

F055831

Metagenome / Metatranscriptome

138

F056185

Metagenome

138

F058543

Metagenome

135

F060457

Metagenome / Metatranscriptome

133

F060458

Metagenome / Metatranscriptome

133

F063813

Metagenome / Metatranscriptome

129

F071376

Metagenome

122

F077972

Metagenome

117

F080090

Metagenome / Metatranscriptome

115

F088925

Metagenome / Metatranscriptome

109

F097602

Metagenome / Metatranscriptome

104

F102135

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256816_1000905	All Organisms → cellular organisms → Bacteria → Proteobacteria	1270	Open in IMG/M
Ga0256816_1001132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	1199	Open in IMG/M
Ga0256816_1001980	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1033	Open in IMG/M
Ga0256816_1002802	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium	941	Open in IMG/M
Ga0256816_1003424	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
Ga0256816_1006844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	733	Open in IMG/M
Ga0256816_1006879	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	732	Open in IMG/M
Ga0256816_1012309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.	625	Open in IMG/M
Ga0256816_1012321	Not Available	624	Open in IMG/M
Ga0256816_1013123	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	614	Open in IMG/M
Ga0256816_1013644	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	607	Open in IMG/M
Ga0256816_1014901	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	592	Open in IMG/M
Ga0256816_1015421	Not Available	586	Open in IMG/M
Ga0256816_1021175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	535	Open in IMG/M
Ga0256816_1021671	Not Available	531	Open in IMG/M
Ga0256816_1024116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
Ga0256816_1025373	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	508	Open in IMG/M
Ga0256816_1026110	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0256816_1000905

All Organisms → cellular organisms → Bacteria → Proteobacteria

1270

Open in IMG/M

Ga0256816_1001132

All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium

1199

Open in IMG/M

Ga0256816_1001980

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1033

Open in IMG/M

Ga0256816_1002802

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → unclassified Syntrophobacteraceae → Syntrophobacteraceae bacterium

941

Open in IMG/M

Ga0256816_1003424

All Organisms → cellular organisms → Bacteria

888

Open in IMG/M

Ga0256816_1006844

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

733

Open in IMG/M

Ga0256816_1006879

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon

732

Open in IMG/M

Ga0256816_1012309

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → methanotrophic bacterial endosymbiont of Bathymodiolus sp.

625

Open in IMG/M

Ga0256816_1012321

Not Available

624

Open in IMG/M

Ga0256816_1013123

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii

614

Open in IMG/M

Ga0256816_1013644

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

607

Open in IMG/M

Ga0256816_1014901

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

592

Open in IMG/M

Ga0256816_1015421

Not Available

586

Open in IMG/M

Ga0256816_1021175

All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium

535

Open in IMG/M

Ga0256816_1021671

Not Available

531

Open in IMG/M

Ga0256816_1024116

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

515

Open in IMG/M

Ga0256816_1025373

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

508

Open in IMG/M

Ga0256816_1026110

All Organisms → cellular organisms → Bacteria

504

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0256816_1000905	Ga0256816_10009052	F063813	KPRYPITKTPINEFLTNEEILPIIHKDALMSLVRWSQAHGQKLKPSECESKFQPLAEPSHPSKKPSDQLGSGTGSAPIDETNSIERGLS
Ga0256816_1001132	Ga0256816_10011322	F050467	MRSMLTLIAIVLTASLATAQISVGPGVTYIAPPRPMATIEFVQEAGIERWQVRLTGGQYTADTAYLRITGNSCTHMDEVYKGMITPLYEDMTFKTKNGRTCTVTAIER
Ga0256816_1001980	Ga0256816_10019802	F060457	MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLLVWIIYYSFRLAKSRKLLGLAFFGMALSAVVLGIYNFGLMSQYKNAKRYLGEERTFCREATYETLLSKYETEKSMISASFRLCLDKEHALPETCIKEVNHATSLNEVMLGNRLLRLSNCANSLTTRQKSVDRLKNNPWVKFWLNFP
Ga0256816_1002802	Ga0256816_10028022	F060458	KIGIELICRYSFIQMGLTAVVQKITLLQEFIKKRCADAPAATIASRKKSGAQRVFEIIQSSEKGVDPLFIREMTGLKEQKTAKILYKLFKYGEIRIESGGLYVAVAGR
Ga0256816_1003424	Ga0256816_10034242	F036032	LVLNALDLMPRGSRLLAIQLRGSGAVQPPLRAVHDSHHHLQIPQQFGASPG
Ga0256816_1004592	Ga0256816_10045922	F077972	MASTPVILLQKRSGNSSDRPNSSTVQAGEAAMSFGSADPGLYFKDSAGSIRKFGSNHYGTTAPN
Ga0256816_1006844	Ga0256816_10068441	F052686	MPESARIMENEAMTNKSRSKPPPPGSTDAEPGHLGVDDRGNVTWEWSDDEDLLADDSLGAAERVRALVDPKLQIREDEDDPLSPAQSNPKGLKSGYNPYNSGALGKQSWKKKKDL
Ga0256816_1006879	Ga0256816_10068791	F102135	MFWIGFIVGIFLGANIGIVVAGLLISAKKNDAEDPKTQSPMDYAVMDEVKEVQGEMPALSKPVTYLDRYPHS
Ga0256816_1012309	Ga0256816_10123091	F097602	VTILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSADEAVVIVKFGADEFMVTWRRVKHRISNRTLEVKGGTCKRPWPLIIDRRTEISLTGAVEYLRRKQ
Ga0256816_1012321	Ga0256816_10123212	F071376	LNPVGLWTLHFDWGPSGNYNWTPLYFNFDGTFAYLAGANEGSWVQVDDNIICRFKPLPETENNTVYSGIATRNFMSGIMMSFQGQKGHWYAVKKGTKVYSLNNGTNLPYLVDKESKAKFDPVGKEK
Ga0256816_1013123	Ga0256816_10131233	F080090	GWSEPLRVDNKLSNANSWRETYEEDEAALRSRLQDISTS
Ga0256816_1013644	Ga0256816_10136442	F031548	MKINILKILSIVTLAIFLGAGISLAGGWKGDCAPRGNAYGHYKHGGYQHYHYAQPRPVYVERHYRPVVVERHYYPAPVYHAAPAPNGYFFGMSVMEPGVAFSFGISGH
Ga0256816_1014901	Ga0256816_10149011	F055831	MQMIAELKMLLLEMLESAFQNADVHATQQMGVSMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQVEVTVAPQHPQLPPPGDEGDTDPIEACCTWLYENHTKWQDMQDLMKARYL
Ga0256816_1015421	Ga0256816_10154211	F016394	MQNEELAYLAKKVRNSLPNVESFPIATIYTTIKEQEKTKLNLPDFKKLFYDLTGWDISLQVIRRQLEIYHIVWXEQLG
Ga0256816_1021175	Ga0256816_10211751	F050471	HVHAIGWVLVANAYILTPAEARELTDLWTDLVRRRAADLRQAPLLLHLLFPRSLPLAPATRAALAKLVAHMVSQHPERFGDAALRQRRNHWAGQAMLGFLLSGLTAVLLPIHWTWAAPVTPTFLLMGFGCLLPTVMLWRAAAAVHACNTGRFATHLVERLLHRFQVR
Ga0256816_1021671	Ga0256816_10216711	F058543	METVTISANINEKKKAEFFQTMESLTGLVQNQCNDLDIRVKDDNNLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN
Ga0256816_1022792	Ga0256816_10227921	F013597	MSDLSVFLLTIRGTLKPATLEESRKVHNQTAGNPEGVAAAKSLGDVSHMVYVPAMHNGHDKPKGAGEFLIMDLWTSIEGLNTFFADHHVQEG
Ga0256816_1024116	Ga0256816_10241161	F088925	MKEIPMQDRKCSKCGSINVYKNTSNNWHQDGLVIQMLAVDSFPALFQTEAFLCLDCRNLELQVLETSTMYGQQKSLVETIQASNNWR
Ga0256816_1025373	Ga0256816_10253731	F007558	MQAIADLKALALKMLEGAFQSGDVHATQQMGVSMTNAVKREGVVIIQNQNVEVFARIIPSMVKMLKLCDAIESNWRRQAAIELEPQQDQLPPPAGGEDTDPIEACCLWLYENHINWQDMQDLMKARYLEYVIGRFKTKTEAAKWLGVGSTYLCKLSRTAMNN
Ga0256816_1026110	Ga0256816_10261102	F056185	LASLLIAAGCAGPLAKIRAVDQPKEAELRANWKSYHTYCLRDYAILFQLKGDKTIEKENDWQEVTSDQMASRCASFFSLSPVKELRGENDAIFGYVIYNHNDGVSAVIIDPKTIRLFYHVHPKGP

Scaffold ID

Protein ID

Family

Sequence

Ga0256816_1000905

Ga0256816_10009052

F063813

KPRYPITKTPINEFLTNEEILPIIHKDALMSLVRWSQAHGQKLKPSECESKFQPLAEPSHPSKKPSDQLGSGTGSAPIDETNSIERGLS

Ga0256816_1001132

Ga0256816_10011322

F050467

MRSMLTLIAIVLTASLATAQISVGPGVTYIAPPRPMATIEFVQEAGIERWQVRLTGGQYTADTAYLRITGNSCTHMDEVYKGMITPLYEDMTFKTKNGRTCTVTAIER

Ga0256816_1001980

Ga0256816_10019802

F060457

MPKDNADPRTSSSDIGIFLSTIFHIASIACVPFLVNGTVNGNIYTCGLLLVWIIYYSFRLAKSRKLLGLAFFGMALSAVVLGIYNFGLMSQYKNAKRYLGEERTFCREATYETLLSKYETEKSMISASFRLCLDKEHALPETCIKEVNHATSLNEVMLGNRLLRLSNCANSLTTRQKSVDRLKNNPWVKFWLNFP

Ga0256816_1002802

Ga0256816_10028022

F060458

KIGIELICRYSFIQMGLTAVVQKITLLQEFIKKRCADAPAATIASRKKSGAQRVFEIIQSSEKGVDPLFIREMTGLKEQKTAKILYKLFKYGEIRIESGGLYVAVAGR

Ga0256816_1003424

Ga0256816_10034242

F036032

LVLNALDLMPRGSRLLAIQLRGSGAVQPPLRAVHDSHHHLQIPQQFGASPG

Ga0256816_1004592

Ga0256816_10045922

F077972

MASTPVILLQKRSGNSSDRPNSSTVQAGEAAMSFGSADPGLYFKDSAGSIRKFGSNHYGTTAPN

Ga0256816_1006844

Ga0256816_10068441

F052686

MPESARIMENEAMTNKSRSKPPPPGSTDAEPGHLGVDDRGNVTWEWSDDEDLLADDSLGAAERVRALVDPKLQIREDEDDPLSPAQSNPKGLKSGYNPYNSGALGKQSWKKKKDL

Ga0256816_1006879

Ga0256816_10068791

F102135

MFWIGFIVGIFLGANIGIVVAGLLISAKKNDAEDPKTQSPMDYAVMDEVKEVQGEMPALSKPVTYLDRYPHS

Ga0256816_1012309

Ga0256816_10123091

F097602

VTILPSEGPSALGRCNCDTLSPKRNSNVDVMNRGSADEAVVIVKFGADEFMVTWRRVKHRISNRTLEVKGGTCKRPWPLIIDRRTEISLTGAVEYLRRKQ

Ga0256816_1012321

Ga0256816_10123212

F071376

LNPVGLWTLHFDWGPSGNYNWTPLYFNFDGTFAYLAGANEGSWVQVDDNIICRFKPLPETENNTVYSGIATRNFMSGIMMSFQGQKGHWYAVKKGTKVYSLNNGTNLPYLVDKESKAKFDPVGKEK

Ga0256816_1013123

Ga0256816_10131233

F080090

GWSEPLRVDNKLSNANSWRETYEEDEAALRSRLQDISTS

Ga0256816_1013644

Ga0256816_10136442

F031548

MKINILKILSIVTLAIFLGAGISLAGGWKGDCAPRGNAYGHYKHGGYQHYHYAQPRPVYVERHYRPVVVERHYYPAPVYHAAPAPNGYFFGMSVMEPGVAFSFGISGH

Ga0256816_1014901

Ga0256816_10149011

F055831

MQMIAELKMLLLEMLESAFQNADVHATQQMGVSMSNAVKREGVVIIQNQNVEVLARIMPSMVKTLKLCDAMESSWRSQVEVTVAPQHPQLPPPGDEGDTDPIEACCTWLYENHTKWQDMQDLMKARYL

Ga0256816_1015421

Ga0256816_10154211

F016394

MQNEELAYLAKKVRNSLPNVESFPIATIYTTIKEQEKTKLNLPDFKKLFYDLTGWDISLQVIRRQLEIYHIVWXEQLG

Ga0256816_1021175

Ga0256816_10211751

F050471

HVHAIGWVLVANAYILTPAEARELTDLWTDLVRRRAADLRQAPLLLHLLFPRSLPLAPATRAALAKLVAHMVSQHPERFGDAALRQRRNHWAGQAMLGFLLSGLTAVLLPIHWTWAAPVTPTFLLMGFGCLLPTVMLWRAAAAVHACNTGRFATHLVERLLHRFQVR

Ga0256816_1021671

Ga0256816_10216711

F058543

METVTISANINEKKKAEFFQTMESLTGLVQNQCNDLDIRVKDDNNLIIKITFDGKDQMEKNFYTGEFNILKGTVKSLCEDVRIKINDTAVNNN

Ga0256816_1022792

Ga0256816_10227921

F013597

MSDLSVFLLTIRGTLKPATLEESRKVHNQTAGNPEGVAAAKSLGDVSHMVYVPAMHNGHDKPKGAGEFLIMDLWTSIEGLNTFFADHHVQEG

Ga0256816_1024116

Ga0256816_10241161

F088925

MKEIPMQDRKCSKCGSINVYKNTSNNWHQDGLVIQMLAVDSFPALFQTEAFLCLDCRNLELQVLETSTMYGQQKSLVETIQASNNWR

Ga0256816_1025373

Ga0256816_10253731

F007558

MQAIADLKALALKMLEGAFQSGDVHATQQMGVSMTNAVKREGVVIIQNQNVEVFARIIPSMVKMLKLCDAIESNWRRQAAIELEPQQDQLPPPAGGEDTDPIEACCLWLYENHINWQDMQDLMKARYLEYVIGRFKTKTEAAKWLGVGSTYLCKLSRTAMNN

Ga0256816_1026110

Ga0256816_10261102

F056185

LASLLIAAGCAGPLAKIRAVDQPKEAELRANWKSYHTYCLRDYAILFQLKGDKTIEKENDWQEVTSDQMASRCASFFSLSPVKELRGENDAIFGYVIYNHNDGVSAVIIDPKTIRLFYHVHPKGP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026370: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 F5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences