3300014053: Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment

Overview

Basic Information

• IMG/M Taxon OID: 3300014053
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118595 | Gp0137314 | Ga0119956
• Sample Name: Contaminated water microbial communities from Hexachlorocyclohexane (HCH) contaminated sediment in Lucknow, India - Pond Sediment
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Delhi
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 231567166
• Sequencing Scaffolds: 18
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Contaminated Water Microbial Communities From Pond Sediment In Lucknow, India
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Pond → Sediment → Contaminated Water → Contaminated Water Microbial Communities From Pond Sediment In Lucknow, India

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → pond → contaminated water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: India: Chinhat, Lucknow
• Coordinates
  • Lat. (^o): 26.5389
  • Long. (^o): 81.2022
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000842	Metagenome / Metatranscriptome	865	Y
F004285	Metagenome / Metatranscriptome	445	Y
F007038	Metagenome / Metatranscriptome	359	Y
F007482	Metagenome	350	Y
F008263	Metagenome / Metatranscriptome	336	N
F008391	Metagenome / Metatranscriptome	334	Y
F017920	Metagenome / Metatranscriptome	238	N
F023369	Metagenome / Metatranscriptome	210	Y
F028546	Metagenome / Metatranscriptome	191	Y
F034114	Metagenome / Metatranscriptome	175	Y
F035931	Metagenome / Metatranscriptome	171	Y
F041511	Metagenome / Metatranscriptome	160	Y
F051390	Metagenome	144	Y
F056160	Metagenome / Metatranscriptome	138	Y
F056509	Metagenome / Metatranscriptome	137	Y
F063965	Metagenome	129	Y
F088925	Metagenome / Metatranscriptome	109	Y
F095305	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0119956_1000464	Not Available	3051
Ga0119956_1001214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1918
Ga0119956_1005316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	816
Ga0119956_1007992	All Organisms → cellular organisms → Bacteria → Acidobacteria	687
Ga0119956_1008549	All Organisms → cellular organisms → Bacteria	670
Ga0119956_1009415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	648
Ga0119956_1010962	All Organisms → cellular organisms → Bacteria	618
Ga0119956_1011642	Not Available	606
Ga0119956_1011862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603
Ga0119956_1012351	All Organisms → cellular organisms → Bacteria	596
Ga0119956_1015177	Not Available	562
Ga0119956_1016126	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	553
Ga0119956_1016375	All Organisms → cellular organisms → Bacteria → Acidobacteria	551
Ga0119956_1018142	Not Available	536
Ga0119956_1018465	All Organisms → cellular organisms → Bacteria → Acidobacteria	534
Ga0119956_1020571	Not Available	519
Ga0119956_1021218	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	515
Ga0119956_1021896	All Organisms → cellular organisms → Bacteria	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0119956_1000464	Ga0119956_10004644	F034114	MPVILKETSVAAGAVNENILAGSAFEFARQNSLVSIGIHQSATGGFATIQAGADIVAEEFSVPIATTYPVIPDNMYFSDVAAAGDRLVIRYRNPTGGALVVRVVAQVTPL*
Ga0119956_1001214	Ga0119956_10012141	F000842	MLDLLGVEGGGTLGQSNAEQERPYLAAWSGKDRAYKAGRQKARGAGRESERSIVPGKAWNTTRWREGALL*
Ga0119956_1005316	Ga0119956_10053161	F004285	RVRNGEDQMSLSWISNRSLRVSPRVRLVADGEAEALRRKLEQLDWKPQNGFLKDQVAERSPVTASRGNRAA*
Ga0119956_1007992	Ga0119956_10079921	F035931	RNQYRNGELTSCSTDHEWLWITTLDRQAFPAATIRQLGHSRWRQENNGWMDLTKHWAFKHGFLHACRHRPKYIDASGHRVLVPNRGLAAVTLILLIAFALSSAFLLRHSKLARLDHLTGLAVASQLRSWISKAPPSIRAPD*
Ga0119956_1008549	Ga0119956_10085491	F007482	RHVFINRDSHPDADIYVAIHEAKDLPSPVPDYQVPHCHNTDEFYYFIGHHPDLTGLEGQIIFEGKVHKIVSPACVYIPTGTVHEYKVTRGAGTVTVLFRNRGYTHEDKPFDIAKGERDFSRYAGYIFQPEVRPTTEIKHHSDAAPGTRYVFVDGSLKPRVEGGKNGDGGAAHSTDICGSKPDSAPRGS*
Ga0119956_1009415	Ga0119956_10094151	F007038	MWIGLADEEGRSWYGISSEVEIDPSTNDFISGAFRLITPDEARMSRQQLAAAVVDFCGHVDEFWAWIPTVERFAEWFGLGDEAAEVFDRCWNIDLQMLRALVNPWPRGWPNRLHNLNAAAVAAGVEIPRRAANHLHPRVHAEWNRQLFELIRATGSL*
Ga0119956_1010962	Ga0119956_10109621	F017920	AIDPTRITTVALGRGESITKTVKELTDGLGASVLAELVPGGIESTLECIKNLEPGGRVALIAPNPEPLNLPLRYLMIRSLEFTSVTGRFAMDIAELLQLVERGVIDTRHITTRYFPLSAVNEALDYINERGDNDPLWPMYAAD*
Ga0119956_1011642	Ga0119956_10116421	F056160	MLATVVSLLMLLTPLAQEQQNAPLAFEVRAAANRQFGKGQTTGLQYYDVPITRQPGSGILIKLDYTRRNTTFSFDLHHRLSLDPEFEYPAEIITNVEVLSGGTTSIGTFTVIDTIKAGDVFEEAIDKVSTAEVDRYVTPFGKKTVTLKLGSGSQSISIVGQSVIIT
Ga0119956_1011862	Ga0119956_10118621	F088925	MQERKCSKCGSVNVYKSIGNNWHQEGIILQIIAEDSFHDVFQTEAFLCLDCRNLEIQVMETSTMYGKQKSLVDTVQASNNWVKA*
Ga0119956_1012351	Ga0119956_10123511	F028546	MLFLKNTPVNQILSIGEMIDVIEDTLKEIASGRGFDLPRRRIHHPNRMILGILPGSVHGAMGAYIQTDLDRRSACR
Ga0119956_1015177	Ga0119956_10151771	F023369	MRFSLLEPEFGWGEKDEPGPQTEDSRERGFVRNANLDEKMGHSDSLDLDDVGDVADEGPGRRG*
Ga0119956_1016126	Ga0119956_10161261	F051390	DWYGDTFGLVVGDQVPGDDQLTLTVAKSNQLVILRKVDKVADRSTQCYRGPHVDLRSDEASYPEMLKRFNRKETYWGPDPNLIPWHEPDTNTAYGYDPFGNQLFLRVRERIC*
Ga0119956_1016375	Ga0119956_10163752	F008391	WCGCLRRVSLFLTFRDSPDKPFSRWKGKLINDPIATIVRDGQVVGVWEWNAVKDDIDLILFESTPKPVEKAIRKRATALAEFIRHDLGQQPRLHGLDFGPHQMTCIHDLKAFWGRGAQVDIHAV*
Ga0119956_1018142	Ga0119956_10181421	F063965	MEGRSFLRRKDREALRERWLLRAGKAFERMFGEANQDQLVTFTEREDMAVLLSKELAAFLLEEHAAADRQVRPSEKHAPNCPKCSKPGVRVTKASEKLPERELTTRAGEVKLRREQWRCAKCRVNFFSVRPQAQAGDRRLQSADSGESRAAGEQGGIVQRGE*
Ga0119956_1018465	Ga0119956_10184651	F008263	GPVIEGFEDCALGEFIKAQLEALSHNGEPPARCEIHGLDPFLELAEPEDPDRLRDLISVCEFRVNEFTPESAVRFLKESGFFDEYIIVGVKRGSGWRRSRCITTFEGRPGDAATILGHLAEYFGKETQDDKPHDDRKA*
Ga0119956_1020571	Ga0119956_10205711	F041511	KEIKMTLVQKRINGTEYYTDDKVYYTFHKVKDTADTLWNFACMELGITKKSGFNSQETKAITDLAGISSLHPTKFLLLKEGNAVPVPYLPNGSADLHPDDIILRATVDPAAKPIAPSVVTVVPPSSLTKSVADRLKEIEDLLAMKLLSEPEYQDKRAKVIAEL*
Ga0119956_1021218	Ga0119956_10212182	F095305	MTGSLSRFWIGLIVLAVALTCADAASAQRKVRFAYPSSADLGDIPSLLAWEQLKKQGIEVVPTFFPKTDLAVQAVVAG
Ga0119956_1021896	Ga0119956_10218962	F056509	MINFRRTGGADREMTRDFELSSLPEAAANRLQSLLSQSNFFEIPTINDLRVGPEEHAYSITVVAGNSLHTVNVSDTSMPRSLRLL