3300026362: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C6

Overview

Basic Information

• IMG/M Taxon OID: 3300026362
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133548 | Gp0296334 | Ga0256801
• Sample Name: Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 C6
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51612554
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Sediment Microbial Communities From Tidal Freshwater Marsh On Altamaha River, Georgia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater river biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: USA: Georgia
• Coordinates
  • Lat. (^o): 31.3377
  • Long. (^o): -81.4644
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003001	Metagenome / Metatranscriptome	514	Y
F015418	Metagenome / Metatranscriptome	255	Y
F019677	Metagenome / Metatranscriptome	228	Y
F020200	Metagenome	225	Y
F040709	Metagenome / Metatranscriptome	161	Y
F056185	Metagenome	138	Y
F056715	Metagenome / Metatranscriptome	137	Y
F060457	Metagenome / Metatranscriptome	133	Y
F063202	Metagenome / Metatranscriptome	130	Y
F088761	Metagenome / Metatranscriptome	109	Y
F088925	Metagenome / Metatranscriptome	109	Y
F102135	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256801_1000299	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1197
Ga0256801_1000390	Not Available	1108
Ga0256801_1001085	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatibacillum → Desulfatibacillum alkenivorans	859
Ga0256801_1002022	All Organisms → cellular organisms → Bacteria	735
Ga0256801_1002286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	713
Ga0256801_1002718	All Organisms → cellular organisms → Bacteria	682
Ga0256801_1002817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	676
Ga0256801_1004498	Not Available	598
Ga0256801_1004665	Not Available	592
Ga0256801_1005361	All Organisms → cellular organisms → Bacteria	570
Ga0256801_1005611	Not Available	563
Ga0256801_1008757	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256801_1000299	Ga0256801_10002993	F060457	MYKDNAEPHNSSSDLGIFLSTIFHIASIACVPFLANGTVNGNLYACGLLIVWTIYYSMRLAKSRKLLGLAFFVMILSAVVFGIYNFGLMSHYKNAKIYLEEEEIFCRETTYETLLSKYETEKSMISANFRICLDKAHVQPETCIKEVNHGTSLNEVMLSNRLLRLSNCANSLTTKQKSVDRLKHRPWVKFWLG
Ga0256801_1000390	Ga0256801_10003904	F003001	MILTAIISVIASFVLVGAWTANLVSYHPATDLDPLTPISVDWK
Ga0256801_1001085	Ga0256801_10010851	F019677	MITYSTPDVARILGIESSRVRDWIVKGFIIPSWHKAMARGDKNLLTYDNLCYVYLLQQLLSKGFHRTSIGFIISEIAKTGLSKNLESGFRYVIWNTKNPKEGGKVTISAEIPTSMIDILIIGDRRAVPRRYSQMLVIDLLEIKNEVNRKREKRGG
Ga0256801_1002022	Ga0256801_10020221	F063202	NLRGYDIELGMDMTQVWEKLRSGFNVVEDEAGIFYISDKNDEPVGVIYFENEVAVKIIKDWGTTTKTNAGQVFKTLWNILKQYDKDLDSVKLIPIETFTSKGSKYSLQIYISKNRYLDITIQLAVTILEVLEEPKI
Ga0256801_1002286	Ga0256801_10022862	F020200	MCWVCERLENLIAGWNEEREFQEKTSSDQYHRGLSKGYSECVKDLSEAVASMRLKGLCEKLPEYEGSINDKQRWDILNEILKLRDEDSNQE
Ga0256801_1002718	Ga0256801_10027181	F040709	MLEIITIIVLVPIACIAWMIWTEQKSKQALDRDALDQAWREVPDDPNYAERRHFEERKRVVDQARADTAAN
Ga0256801_1002817	Ga0256801_10028172	F088925	MQERKCSKCGSVNVYKNTSNNWHQDGVVLQMIAVDSFHDLFQTEAFLCLDCRNLEIQVAETSTMYGKQKVLVDTIKASNNWVKA
Ga0256801_1004498	Ga0256801_10044981	F056715	MQEFRRVRVAIDSLIDEVKESIKRKSLSESMEQLEQARGLVQELRQMSTTDQAAIVAKRETTIAGLTDIAGKIKAPAIKKRSTKDRLEQVATL
Ga0256801_1004665	Ga0256801_10046651	F015418	MSIVSRRTFTKGLLASALVSGNSAIGQPNDPGSIAIIDTPNNAAKVASKLSAQNVKVVVRFFARKAQLGLREKVMASDSNMIDG
Ga0256801_1005361	Ga0256801_10053611	F056185	IRKVDLPREKELRANWKNYNTYCLRSRSGNVDFADAMLFQLKSDKTIQRDDDWREVTSDQMASGCASLLSDSSPVMQLLGENDEIFGYVIYNFNDQIWASIIDPKTIRLFYHVHPKGP
Ga0256801_1005611	Ga0256801_10056111	F088761	KNYVINNGAFTASGNFSGYTALGDRIHLFKRQMQALGWESQTDVKFPFYCIATIKQIGQLDLKGNPVVDEKGLPVTSDRLTALSAFKTRDEIKQAHADASLLDIEIAQEIRTQASSAGLTEESLKALASSPF
Ga0256801_1008757	Ga0256801_10087571	F102135	MFWIGFIVGIFLGANIGIVVAGLLISGKKNDAEDPKTQSPMDYAVMDEVKEVQGEMPALSKPVTYLDRYPHS