Metagenome / Metatranscriptome Family F046429

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F046429
Family Type	Metagenome / Metatranscriptome
Number of Sequences	151
Average Sequence Length	54 residues
Representative Sequence	AAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Number of Associated Samples	103
Number of Associated Scaffolds	151

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.40 %
% of genes near scaffold ends (potentially truncated)	64.90 %
% of genes from short scaffolds (< 2000 bps)	90.73 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.172 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (31.788 % of family members)
Environment Ontology (ENVO)	Unclassified (60.927 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (96.689 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 71.70% β-sheet: 0.00% Coil/Unstructured: 28.30%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 151 Family Scaffolds
PF00118	Cpn60_TCP1	78.15
PF01327	Pep_deformylase	2.65
PF04542	Sigma70_r2	1.99
PF08345	YscJ_FliF_C	0.66
PF08218	Citrate_ly_lig	0.66
PF00140	Sigma70_r1_2	0.66
PF00383	dCMP_cyt_deam_1	0.66

COG ID	Name	Functional Category	% Frequency in 151 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	78.15
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	2.65
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.65
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.99
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.99
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.99
COG1766	Flagellar biosynthesis/type III secretory pathway M-ring protein FliF/YscJ	Cell motility [N]	1.32
COG0669	Phosphopantetheine adenylyltransferase	Coenzyme transport and metabolism [H]	0.66
COG3053	Citrate lyase synthetase CitC	Energy production and conversion [C]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.50 %
Unclassified	root	N/A	24.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.17 %
Unclassified	root	N/A	24.50 %
Viruses	superkingdom	All Organisms → Viruses	1.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.17 %
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	72.19 %
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %
unclassified Methylococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.32 %
Methylococcaceae bacterium TMED69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001823\|ACM25_103735	Not Available	605	Open in IMG/M
3300001966\|GOS2245_1121542	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300002682\|Ga0005230J37285_108437	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300002691\|Ga0005231J37286_1034391	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300002696\|Ga0005228J37280_1016243	All Organisms → cellular organisms → Bacteria → Proteobacteria	1518	Open in IMG/M
3300004280\|Ga0066606_10099374	Not Available	1100	Open in IMG/M
3300005234\|Ga0066613_1471061	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300005428\|Ga0066863_10224194	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300005523\|Ga0066865_10110842	All Organisms → cellular organisms → Bacteria → Proteobacteria	1000	Open in IMG/M
3300005747\|Ga0076924_1262846	All Organisms → cellular organisms → Bacteria → Proteobacteria	13384	Open in IMG/M
3300005837\|Ga0078893_11519136	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300005960\|Ga0066364_10100223	All Organisms → cellular organisms → Bacteria → Proteobacteria	971	Open in IMG/M
3300006305\|Ga0068468_1013338	Not Available	754	Open in IMG/M
3300006729\|Ga0079231_1341156	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300006750\|Ga0098058_1041714	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300007215\|Ga0079272_1184246	All Organisms → cellular organisms → Bacteria → Proteobacteria	1533	Open in IMG/M
3300007325\|Ga0079257_1318756	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300007326\|Ga0079243_1005608	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300007326\|Ga0079243_1034650	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300007326\|Ga0079243_1046081	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300007326\|Ga0079243_1301468	All Organisms → cellular organisms → Bacteria → Proteobacteria	990	Open in IMG/M
3300007331\|Ga0079271_1056218	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300007331\|Ga0079271_1103840	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300007331\|Ga0079271_1376120	All Organisms → cellular organisms → Bacteria → Proteobacteria	1393	Open in IMG/M
3300007332\|Ga0079256_1223726	All Organisms → cellular organisms → Bacteria → Proteobacteria	962	Open in IMG/M
3300007337\|Ga0079244_1030499	Not Available	532	Open in IMG/M
3300007337\|Ga0079244_1077438	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300007605\|Ga0102779_1201889	Not Available	558	Open in IMG/M
3300008993\|Ga0104258_1009596	All Organisms → cellular organisms → Bacteria → Proteobacteria	1778	Open in IMG/M
3300008993\|Ga0104258_1044129	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300009409\|Ga0114993_10233060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300009425\|Ga0114997_10298020	Not Available	893	Open in IMG/M
3300009543\|Ga0115099_10126012	All Organisms → cellular organisms → Bacteria → Proteobacteria	1065	Open in IMG/M
3300009543\|Ga0115099_10150283	All Organisms → cellular organisms → Bacteria → Proteobacteria	1551	Open in IMG/M
3300009543\|Ga0115099_10308535	All Organisms → cellular organisms → Bacteria → Proteobacteria	1079	Open in IMG/M
3300009543\|Ga0115099_10708279	All Organisms → cellular organisms → Bacteria → Proteobacteria	1462	Open in IMG/M
3300009543\|Ga0115099_10777851	All Organisms → cellular organisms → Bacteria → Proteobacteria	1563	Open in IMG/M
3300009543\|Ga0115099_10833123	Not Available	1503	Open in IMG/M
3300009543\|Ga0115099_10874231	All Organisms → cellular organisms → Bacteria → Proteobacteria	980	Open in IMG/M
3300009543\|Ga0115099_10878618	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300009592\|Ga0115101_1241047	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300009592\|Ga0115101_1625242	Not Available	598	Open in IMG/M
3300009593\|Ga0115011_10001795	All Organisms → cellular organisms → Bacteria → Proteobacteria	15253	Open in IMG/M
3300009593\|Ga0115011_10970192	Not Available	717	Open in IMG/M
3300009599\|Ga0115103_1076273	Not Available	1555	Open in IMG/M
3300009599\|Ga0115103_1151785	All Organisms → cellular organisms → Bacteria → Proteobacteria	1571	Open in IMG/M
3300009599\|Ga0115103_1197173	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300009606\|Ga0115102_10046829	Not Available	1512	Open in IMG/M
3300009606\|Ga0115102_10344048	Not Available	792	Open in IMG/M
3300009606\|Ga0115102_10620082	Not Available	1254	Open in IMG/M
3300009606\|Ga0115102_10739558	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300009608\|Ga0115100_10400257	All Organisms → cellular organisms → Bacteria → Proteobacteria	1090	Open in IMG/M
3300009608\|Ga0115100_10709909	All Organisms → cellular organisms → Bacteria → Proteobacteria	1502	Open in IMG/M
3300009608\|Ga0115100_11031248	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300009677\|Ga0115104_10177370	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300009677\|Ga0115104_10843188	All Organisms → cellular organisms → Bacteria → Proteobacteria	1741	Open in IMG/M
3300009677\|Ga0115104_11083123	All Organisms → cellular organisms → Bacteria → Proteobacteria	1477	Open in IMG/M
3300009677\|Ga0115104_11207968	All Organisms → cellular organisms → Bacteria → Proteobacteria	1776	Open in IMG/M
3300009679\|Ga0115105_11337964	All Organisms → cellular organisms → Bacteria → Proteobacteria	1722	Open in IMG/M
3300009679\|Ga0115105_11430352	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300009786\|Ga0114999_10868822	Not Available	661	Open in IMG/M
3300009790\|Ga0115012_10895369	Not Available	726	Open in IMG/M
3300009790\|Ga0115012_10907245	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300009790\|Ga0115012_10949809	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
3300009790\|Ga0115012_12006664	Not Available	513	Open in IMG/M
3300010883\|Ga0133547_11834880	All Organisms → cellular organisms → Bacteria → Proteobacteria	1119	Open in IMG/M
3300011300\|Ga0138364_1115100	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300011302\|Ga0138369_1020288	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300011317\|Ga0138386_1051619	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300011324\|Ga0138385_1093751	All Organisms → cellular organisms → Bacteria → Proteobacteria	1516	Open in IMG/M
3300011324\|Ga0138385_1147149	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300011324\|Ga0138385_1222643	All Organisms → cellular organisms → Bacteria → Proteobacteria	1345	Open in IMG/M
3300011325\|Ga0138365_1088398	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300011325\|Ga0138365_1207021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1374	Open in IMG/M
3300011329\|Ga0138367_1103037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300012370\|Ga0123369_1144714	Not Available	529	Open in IMG/M
3300012920\|Ga0160423_10003649	All Organisms → cellular organisms → Bacteria → Proteobacteria	12776	Open in IMG/M
3300012920\|Ga0160423_10015148	All Organisms → cellular organisms → Bacteria → Proteobacteria	5888	Open in IMG/M
3300012928\|Ga0163110_10185205	All Organisms → cellular organisms → Bacteria → Proteobacteria	1466	Open in IMG/M
3300012936\|Ga0163109_10544230	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300012952\|Ga0163180_10062962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2266	Open in IMG/M
3300012952\|Ga0163180_11638008	Not Available	543	Open in IMG/M
3300012953\|Ga0163179_10000372	All Organisms → cellular organisms → Bacteria	32279	Open in IMG/M
3300012953\|Ga0163179_10000545	All Organisms → cellular organisms → Bacteria	27132	Open in IMG/M
3300012953\|Ga0163179_10081723	All Organisms → cellular organisms → Bacteria → Proteobacteria	2296	Open in IMG/M
3300012962\|Ga0129335_1225680	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300012963\|Ga0129340_1232703	Not Available	597	Open in IMG/M
3300012966\|Ga0129341_1376650	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300012970\|Ga0129338_1435889	All Organisms → cellular organisms → Bacteria → Proteobacteria	1263	Open in IMG/M
3300016732\|Ga0182057_1015968	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300016739\|Ga0182076_1411330	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300016747\|Ga0182078_10275771	All Organisms → cellular organisms → Bacteria → Proteobacteria	1602	Open in IMG/M
3300016781\|Ga0182063_1319484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300017706\|Ga0181377_1002469	All Organisms → cellular organisms → Bacteria → Proteobacteria	5589	Open in IMG/M
3300017708\|Ga0181369_1087424	Not Available	658	Open in IMG/M
3300017739\|Ga0181433_1001157	All Organisms → cellular organisms → Bacteria → Proteobacteria	8830	Open in IMG/M
3300017746\|Ga0181389_1078856	Not Available	927	Open in IMG/M
3300017759\|Ga0181414_1140543	Not Available	632	Open in IMG/M
3300017763\|Ga0181410_1200676	Not Available	546	Open in IMG/M
3300017776\|Ga0181394_1006135	All Organisms → cellular organisms → Bacteria	4725	Open in IMG/M
3300017776\|Ga0181394_1162012	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300017949\|Ga0181584_10221952	All Organisms → Viruses → Predicted Viral	1235	Open in IMG/M
3300017951\|Ga0181577_10299979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300017957\|Ga0181571_10253520	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300018036\|Ga0181600_10566387	Not Available	533	Open in IMG/M
3300018041\|Ga0181601_10706669	Not Available	507	Open in IMG/M
3300018421\|Ga0181592_10240750	All Organisms → Viruses → Predicted Viral	1333	Open in IMG/M
3300018428\|Ga0181568_11294634	Not Available	544	Open in IMG/M
3300018938\|Ga0193542_10014571	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300019253\|Ga0182064_1165059	All Organisms → cellular organisms → Bacteria → Proteobacteria	1123	Open in IMG/M
3300019267\|Ga0182069_1495682	All Organisms → cellular organisms → Bacteria → Proteobacteria	1485	Open in IMG/M
3300019271\|Ga0182065_1045975	All Organisms → cellular organisms → Bacteria → Proteobacteria	1127	Open in IMG/M
3300019271\|Ga0182065_1245984	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300019271\|Ga0182065_1246510	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300019271\|Ga0182065_1441271	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300019274\|Ga0182073_1202270	All Organisms → cellular organisms → Bacteria → Proteobacteria	1600	Open in IMG/M
3300019274\|Ga0182073_1436840	All Organisms → cellular organisms → Bacteria → Proteobacteria	1061	Open in IMG/M
3300019277\|Ga0182081_1358935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1512	Open in IMG/M
3300019277\|Ga0182081_1604087	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300019280\|Ga0182068_1248482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1759	Open in IMG/M
3300019280\|Ga0182068_1725009	All Organisms → cellular organisms → Bacteria → Proteobacteria	1523	Open in IMG/M
3300020177\|Ga0181596_10207601	Not Available	850	Open in IMG/M
3300020207\|Ga0181570_10311835	Not Available	784	Open in IMG/M
3300020378\|Ga0211527_10057617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300020391\|Ga0211675_10011886	All Organisms → cellular organisms → Bacteria → Proteobacteria	4750	Open in IMG/M
3300020450\|Ga0211641_10290724	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300020470\|Ga0211543_10550022	Not Available	545	Open in IMG/M
3300021342\|Ga0206691_1509843	All Organisms → cellular organisms → Bacteria → Proteobacteria	949	Open in IMG/M
3300022921\|Ga0255765_1390835	Not Available	514	Open in IMG/M
3300023116\|Ga0255751_10398117	Not Available	682	Open in IMG/M
3300023172\|Ga0255766_10481207	Not Available	577	Open in IMG/M
3300023696\|Ga0228687_1021394	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300026495\|Ga0247571_1108803	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300026504\|Ga0247587_1080120	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300027838\|Ga0209089_10229098	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300027844\|Ga0209501_10118245	All Organisms → cellular organisms → Bacteria → Proteobacteria	1794	Open in IMG/M
3300027906\|Ga0209404_10003478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium TMED69	9217	Open in IMG/M
3300028102\|Ga0247586_1095524	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300028137\|Ga0256412_1044812	All Organisms → cellular organisms → Bacteria → Proteobacteria	1519	Open in IMG/M
3300028137\|Ga0256412_1068860	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257	Open in IMG/M
3300028137\|Ga0256412_1224562	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300028137\|Ga0256412_1289160	Not Available	603	Open in IMG/M
3300028196\|Ga0257114_1089675	All Organisms → cellular organisms → Bacteria → Proteobacteria	1270	Open in IMG/M
3300028282\|Ga0256413_1069053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300028282\|Ga0256413_1266870	All Organisms → cellular organisms → Bacteria → Proteobacteria	606	Open in IMG/M
3300029308\|Ga0135226_1003703	Not Available	923	Open in IMG/M
3300031519\|Ga0307488_10314738	Not Available	1002	Open in IMG/M
3300031774\|Ga0315331_11130716	Not Available	525	Open in IMG/M
3300031851\|Ga0315320_10077327	All Organisms → cellular organisms → Bacteria → Proteobacteria	2563	Open in IMG/M
3300032088\|Ga0315321_10568632	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300032360\|Ga0315334_10947127	Not Available	746	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	41.06%
Unclassified	Environmental → Aquatic → Marine → Unclassified	21.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.19%
Coastal	Environmental → Aquatic → Marine → Coastal	10.60%
Strait	Environmental → Aquatic → Marine → Strait	3.97%
Inlet	Environmental → Aquatic → Marine → Inlet	0.66%
Harbor	Environmental → Aquatic → Marine → Harbor	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	37.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	21.85%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	18.54%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	10.60%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	3.97%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	3.31%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Marine → Harbor → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	31.79%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	21.19%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	18.54%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	6.62%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	3.97%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	3.97%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	2.65%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.65%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.65%
Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water	1.32%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.66%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.66%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.66%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.66%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.66%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.66%
Marine Harbor	Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001823	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o	Environmental	Open in IMG/M
3300001966	Marine microbial communities from Roca Redonda, Equador - GS030	Environmental	Open in IMG/M
3300002682	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_120m_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300002691	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300002696	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004280	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m	Environmental	Open in IMG/M
3300005234	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI047_100m_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005428	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253	Environmental	Open in IMG/M
3300005523	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265	Environmental	Open in IMG/M
3300005747	Seawater microbial communities from Vineyard Sound, MA, USA - control T14	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005960	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A	Environmental	Open in IMG/M
3300006305	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m	Environmental	Open in IMG/M
3300006729	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S2 250_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300007215	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007325	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007326	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 Surf_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007331	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007332	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 Surf_A metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007337	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S7 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007605	Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300008993	Marine microbial communities from eastern North Pacific Ocean - P1 free-living	Environmental	Open in IMG/M
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009543	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009592	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009599	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009606	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009608	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009679	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_155_C17_100m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300009790	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 Metagenome	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300011300	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 DCM_A metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011302	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011317	Marine microbial communities from the Southern Atlantic ocean - KN S17 DCM_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011324	Marine microbial communities from the Southern Atlantic ocean - KN S17 DCM_A metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011325	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 DCM_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011329	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S9 250_B metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012370	Marine microbial and viral communities from Louisana Shelf, Gulf of Mexico - GoM_2015_C6C_209_2m (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental	Open in IMG/M
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental	Open in IMG/M
3300012936	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG	Environmental	Open in IMG/M
3300012952	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome	Environmental	Open in IMG/M
3300012953	Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome	Environmental	Open in IMG/M
3300012962	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012963	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012966	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012970	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016732	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101403AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016739	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071408BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016747	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016781	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101409CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental	Open in IMG/M
3300017759	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018036	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018041	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018938	Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399742-ERR1328124)	Environmental	Open in IMG/M
3300019253	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101410AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019267	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071402VT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019271	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101411XT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019274	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019277	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019280	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071401AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020177	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300020378	Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)	Environmental	Open in IMG/M
3300020391	Marine microbial communities from Tara Oceans - TARA_B100000989 (ERX556130-ERR598967)	Environmental	Open in IMG/M
3300020450	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300021342	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022921	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023172	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG	Environmental	Open in IMG/M
3300023696	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 52R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026495	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 24R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026504	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300027844	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028102	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 45R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028137	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028196	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m	Environmental	Open in IMG/M
3300028282	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029308	Marine harbor viral communities from the Indian Ocean - SRB2	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental	Open in IMG/M
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental	Open in IMG/M
3300032088	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ACM25_1037351	3300001823	Marine Plankton	EIAIIEGDLIVAKNVVTEARRIIGNVGDILVESKKRQVLKG*
GOS2245_11215422	3300001966	Marine	MSITNEQIVAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0005230J37285_1084371	3300002682	Marine	MRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0005231J37286_10343911	3300002691	Marine	QITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0005228J37280_10162431	3300002696	Marine	ASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0066606_100993743	3300004280	Marine	MSITNEHIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0066613_14710611	3300005234	Marine	RASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0066863_102241941	3300005428	Marine	EIAILEGDLIVAKNVVTEARRIIGSADDVLTESTKKRVLKG*
Ga0066865_101108422	3300005523	Marine	MSVTNEQIAAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0076924_12628467	3300005747	Marine	MSITNEQIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG*
Ga0078893_115191362	3300005837	Marine Surface Water	QITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0066364_101002232	3300005960	Marine	MSITNEQIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0068468_10133382	3300006305	Marine	MSITNEQLVAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079231_13411562	3300006729	Marine	ASGQITDQEIAILEGDLIVAKNVVTEARRIIGNASDVLVESTQKRILKG*
Ga0098058_10417142	3300006750	Marine	MSITNEHIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLKG*
Ga0079272_11842461	3300007215	Marine	EGDLIIAKNVVTEARRIIGSANEVLKESTQRRVLKG*
Ga0079257_13187562	3300007325	Marine	QITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0079243_10056081	3300007326	Marine	RRCNMSITNEQIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079243_10346501	3300007326	Marine	GGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079243_10460812	3300007326	Marine	QIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079243_13014682	3300007326	Marine	GQITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0079271_10562182	3300007331	Marine	MSISNEQIVAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079271_11038401	3300007331	Marine	QITDQEIAIVEGDLIVAKNVVTEARRIIGKVTDTIVESTKRQVLKG*
Ga0079271_13761201	3300007331	Marine	QITDQEIAIQEGDLIIAKNVVTEARRIIGSANEVLKESTQRRVLKG*
Ga0079256_12237261	3300007332	Marine	MRASGQITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0079244_10304991	3300007337	Marine	ITNEQIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0079244_10774382	3300007337	Marine	MRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0102779_12018892	3300007605	Marine	IIEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG*
Ga0104258_10095961	3300008993	Ocean Water	MSITNEQIAAMRANGQISDTEIAIIEGDLIVAKNVVTESRRIIGAVTDILVESTQKRILRG*
Ga0104258_10441292	3300008993	Ocean Water	EQIAAMRASGQITDQEIAIFEGDLIVAKNVVTEARRIIGKLGDILVESTKRQVLKG*
Ga0114993_102330601	3300009409	Marine	MSISNEQISAMRASGQITEQEIAILEGDLIVAKNVVTEARRIIGTANDVLVESTQRRVLKG*
Ga0114997_102980201	3300009425	Marine	MSITNEHIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGNANDVLVESTQKRVLKG*
Ga0115099_101260121	3300009543	Marine	GQITDQEIAIFEGYLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0115099_101502832	3300009543	Marine	SISNEQIAAMRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG
Ga0115099_103085351	3300009543	Marine	TMRASGQLTDQEIAILEGDLIVAKNVVTEARRIIGSVNDILVESTKRKVLKG*
Ga0115099_107082792	3300009543	Marine	AIIEGDLIVAKNVVTESRRIIGAVNDILVESTQKRILRG*
Ga0115099_107778512	3300009543	Marine	LEMSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG*
Ga0115099_108331231	3300009543	Marine	ITDQEIAIVEGDLIVAKNVVTEARRIIGSVNDVLKESKQRRVLKG*
Ga0115099_108742311	3300009543	Marine	MRASGQITDQEIAILEGDLIIAKNVVTEARRIIGSANDVLTESTKKRVLRG*
Ga0115099_108786182	3300009543	Marine	MSISNEQIVAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0115101_12410471	3300009592	Marine	RASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG*
Ga0115101_16252422	3300009592	Marine	ASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0115011_1000179525	3300009593	Marine	MSITHEQITAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTSKRVLKG*
Ga0115011_109701922	3300009593	Marine	MSISNEQIAAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0115103_10762735	3300009599	Marine	MSITNEQIATMRASGQLTDQEIAILEGDLIVAKNVVTEARRIIGSVNDILVESTKRKVLKG*
Ga0115103_11517851	3300009599	Marine	IAAMRANGQISDTEIAIIEGDLIVAKNVVTESRRIIGAVNDILVESTQKRILRG*
Ga0115103_11971732	3300009599	Marine	MSITNEQIATMRASGQLSDQEIAILEGDLIVAKNVVTEARRIIGSVSDILVESTKRQVLKG*
Ga0115102_100468291	3300009606	Marine	GGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVNDVLKESKQRRVLKG*
Ga0115102_103440482	3300009606	Marine	MSITNEQIAAMRASGQITDQEIAIFEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0115102_106200822	3300009606	Marine	MSITNEQIAAMRANGQISDTEIAIIEGDLIVAKNVVTESRRIIGAVNDILVESTQKRILRG*
Ga0115102_107395582	3300009606	Marine	ASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG*
Ga0115100_104002571	3300009608	Marine	QIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG*
Ga0115100_107099091	3300009608	Marine	EQIAAMRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0115100_110312481	3300009608	Marine	MRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0115104_101773701	3300009677	Marine	VAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG*
Ga0115104_108431882	3300009677	Marine	MSITNEQIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0115104_110831231	3300009677	Marine	SGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG*
Ga0115104_112079682	3300009677	Marine	MSISNEQIAAMRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0115105_113379642	3300009679	Marine	MSISNEQMSAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0115105_114303522	3300009679	Marine	RVSGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0114999_108688222	3300009786	Marine	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGNANDVLIESTQKRVLKG*
Ga0115012_108953692	3300009790	Marine	MSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVSDTLVESTKRQVLKG*
Ga0115012_109072452	3300009790	Marine	RASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0115012_109498092	3300009790	Marine	MSITNEQIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVNDVLKESKQRRVLKG*
Ga0115012_120066641	3300009790	Marine	MRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0133547_118348802	3300010883	Marine	MSITNEQIATMRASGQLTSQEIAILEGDLIIAKNVVTEARRIIGSANDIIVESAKRTVLKG*
Ga0138364_11151002	3300011300	Marine	SISNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSANDVLTESTKKRVLKG
Ga0138369_10202881	3300011302	Marine	IAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDVIVESTQKRVLRG*
Ga0138386_10516191	3300011317	Marine	DYEMSISNEQIAAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0138385_10937511	3300011324	Marine	ASGQITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0138385_11471492	3300011324	Marine	NEQLTAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESAKRQVLKG*
Ga0138385_12226431	3300011324	Marine	IDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0138365_10883982	3300011325	Marine	MRASGQITDQEIAIVKGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG*
Ga0138365_12070212	3300011325	Marine	RASGQITDQEIAILEGDLIVAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0138367_11030372	3300011329	Marine	ASGQITDQEIAILEGDLIVAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0123369_11447141	3300012370	Marine	SGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG*
Ga0160423_1000364913	3300012920	Surface Seawater	MSITNDQISAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDVLVESTKRQVLKG*
Ga0160423_100151482	3300012920	Surface Seawater	MSISNEQIVAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLTESTQKRVLKG*
Ga0163110_101852052	3300012928	Surface Seawater	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDVIVESTQKRVLRG*
Ga0163109_105442302	3300012936	Surface Seawater	SISNEQIAAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLKESTQRRVLKG
Ga0163180_100629624	3300012952	Seawater	MSISNEQISAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTRKRVLKG*
Ga0163180_116380082	3300012952	Seawater	MSITHEQIAAMRASGQITDQEIAIMEGDLIIAKNVVTEARRIIGKVNDMIVENNQRRVLKG*
Ga0163179_1000037245	3300012953	Seawater	MSISNEQIAAMRAGGQLTDQEIAILEGDLIVAKNVVTEARRIIGPANDILVESTKRQVLKG*
Ga0163179_1000054530	3300012953	Seawater	MSISNEQIAAMRVSGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDVLVESTKRQVLKG*
Ga0163179_100817232	3300012953	Seawater	MSISNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSANDVLTESTKKRVLKG*
Ga0129335_12256801	3300012962	Aqueous	MSITNEQIAAMRASGKITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESNKRQVLKG*
Ga0129340_12327032	3300012963	Aqueous	QITDQEIAIVEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG*
Ga0129341_13766501	3300012966	Aqueous	DQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG*
Ga0129338_14358892	3300012970	Aqueous	AAMRASGKITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESNKRQVLKG*
Ga0182057_10159681	3300016732	Salt Marsh	ITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG
Ga0182076_14113302	3300016739	Salt Marsh	RAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0182078_102757711	3300016747	Salt Marsh	GEFIMSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG
Ga0182063_13194842	3300016781	Salt Marsh	VEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0181377_10024693	3300017706	Marine	MSITNEQIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVNDILKESKQRRVLK
Ga0181369_10874242	3300017708	Marine	MSISNEQITAMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLK
Ga0181433_100115712	3300017739	Seawater	MSITNEQLVAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0181389_10788561	3300017746	Seawater	MSITNEQITAMRADGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTRRQ
Ga0181414_11405432	3300017759	Seawater	MSITNDQISAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDVLVESTKRQVLK
Ga0181410_12006762	3300017763	Seawater	MSISNEQIAAMRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLR
Ga0181394_10061351	3300017776	Seawater	DHEMSISNEQIAAMRASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG
Ga0181394_11620121	3300017776	Seawater	MSITNEQITAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTTRQVLK
Ga0181584_102219522	3300017949	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLK
Ga0181577_102999791	3300017951	Salt Marsh	GVEMSITNEQIAAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0181571_102535202	3300017957	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLK
Ga0181600_105663872	3300018036	Salt Marsh	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSVNDIIVESTKRKVLK
Ga0181601_107066691	3300018041	Salt Marsh	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSVNDIIVE
Ga0181592_102407505	3300018421	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVI
Ga0181568_112946341	3300018428	Salt Marsh	ITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0193542_100145711	3300018938	Marine	GIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG
Ga0182064_11650592	3300019253	Salt Marsh	MRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0182069_14956821	3300019267	Salt Marsh	QITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG
Ga0182065_10459751	3300019271	Salt Marsh	AGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG
Ga0182065_12459842	3300019271	Salt Marsh	RASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0182065_12465102	3300019271	Salt Marsh	EGDLIVAKNVVTEARRIIGSVGDILVELTKRQVLKG
Ga0182065_14412712	3300019271	Salt Marsh	RASGKITDQEIAIQEGDLIIAKNVVTAARRIIGSANAVLTESTQRRVLKG
Ga0182073_12022701	3300019274	Salt Marsh	ITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG
Ga0182073_14368402	3300019274	Salt Marsh	QITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0182081_13589352	3300019277	Salt Marsh	RASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG
Ga0182081_16040872	3300019277	Salt Marsh	GQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVELIKRQVLKG
Ga0182068_12484822	3300019280	Salt Marsh	MRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVLKG
Ga0182068_17250092	3300019280	Salt Marsh	AAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG
Ga0181596_102076013	3300020177	Salt Marsh	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSVNDIIV
Ga0181570_103118353	3300020207	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGSVGDIL
Ga0211527_100576172	3300020378	Marine	MSITNEQIAAMRAGGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0211675_100118866	3300020391	Marine	MSITNEQLVAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0211641_102907242	3300020450	Marine	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLK
Ga0211543_105500222	3300020470	Marine	MSISNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0206691_15098431	3300021342	Seawater	SGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRILKG
Ga0255765_13908351	3300022921	Salt Marsh	MSITNEQIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSVNDIIVEST
Ga0255751_103981171	3300023116	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIV
Ga0255766_104812072	3300023172	Salt Marsh	MSITNEQIAAMRASGQITDQEIAIIEGDLIVAKNVVTEARRIIGSVSDVIVESTKRQVL
Ga0228687_10213942	3300023696	Seawater	ASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG
Ga0247571_11088031	3300026495	Seawater	GKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG
Ga0247587_10801202	3300026504	Seawater	ASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG
Ga0209089_102290981	3300027838	Marine	MSISNEQISAMRASGQITEQEIAILEGDLIVAKNVVTEARRIIGTANDVLVESTQRRVLK
Ga0209501_101182452	3300027844	Marine	MSITNEHIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLK
Ga0209404_100034787	3300027906	Marine	MSITHEQITAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTSKRVLK
Ga0247586_10955241	3300028102	Seawater	DQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG
Ga0256412_10448123	3300028137	Seawater	RASGQITDQEIAILEGDLIVAKDVVTEARRIIGKANDVLVESTQKRVLRG
Ga0256412_10688602	3300028137	Seawater	AMRASGKITDQEIAIQEGDLIIAKNVVTEARRIIGSANDVLTESTQRRVLKG
Ga0256412_12245622	3300028137	Seawater	RASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTRRQVLKG
Ga0256412_12891601	3300028137	Seawater	MRASGQLTDQEIAILEGDLIVAKNVVTEARRIIGSVNDILVESTKRKVLKG
Ga0257114_10896752	3300028196	Marine	RTTGVITDQEIALLEGDILVAKNVITEERRIIGNASDLISEGNDNKRVLKG
Ga0256413_10690531	3300028282	Seawater	DTEIAIIEGDLIVAKNVVTESRRIIGAVNDILVESTQKRILRG
Ga0256413_12668702	3300028282	Seawater	GQITDQEIAILEGDLIVAKNVVTEARRIIGSAKDMLTESTKKRVLKG
Ga0135226_10037032	3300029308	Marine Harbor	MSITNEQIVAMRASGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0307488_103147383	3300031519	Sackhole Brine	MSITNEQIDTMRASGQLTSQEIAILEGDLIIAKNVVTEARRIIGSANDIIVESAKRTVLK
Ga0315331_111307162	3300031774	Seawater	MSITNEQIAAMRASGQITDQEIAIFEGDLIIAKNVVTEARRIIGKVGDILVESTKRQVLK
Ga0315320_100773272	3300031851	Seawater	MSITNEQIAAMRANGQISDTEIAIIEGDLIVAKNVVTESRRIIGAVNDILVESTQKRILR
Ga0315321_105686322	3300032088	Seawater	TITEQEIAIQEGDLIIAKNVVTETRRIIGTATEVLVESTNRRILKG
Ga0315334_109471272	3300032360	Seawater	MSITNEHIAAMRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLIESTQKRVLK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F046429

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences