3300007605: Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_B metaT (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300007605
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0125887 | Ga0102779
• Sample Name: Marine microbial communities from the Southern Atlantic ocean - KN S15 Surf_B metaT (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92608742
• Sequencing Scaffolds: 28
• Novel Protein Genes: 30
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1
Not Available	18
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2
All Organisms → Viruses → Predicted Viral	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Atlantic Ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F003068	Metagenome / Metatranscriptome	509	Y
F004869	Metagenome / Metatranscriptome	420	Y
F005911	Metagenome / Metatranscriptome	386	Y
F006348	Metagenome / Metatranscriptome	375	Y
F007173	Metagenome / Metatranscriptome	356	Y
F007756	Metagenome / Metatranscriptome	345	Y
F008624	Metagenome / Metatranscriptome	330	Y
F008889	Metagenome / Metatranscriptome	326	Y
F010476	Metagenome / Metatranscriptome	303	Y
F013897	Metagenome / Metatranscriptome	267	Y
F016979	Metagenome / Metatranscriptome	243	Y
F018809	Metagenome / Metatranscriptome	233	Y
F025306	Metagenome / Metatranscriptome	202	N
F028201	Metagenome / Metatranscriptome	192	Y
F029129	Metagenome / Metatranscriptome	189	Y
F034213	Metagenome / Metatranscriptome	175	Y
F046429	Metagenome / Metatranscriptome	151	N
F049701	Metagenome / Metatranscriptome	146	N
F049702	Metagenome / Metatranscriptome	146	Y
F059045	Metagenome / Metatranscriptome	134	Y
F071278	Metagenome / Metatranscriptome	122	N
F090441	Metatranscriptome	108	N
F097482	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102779_1000542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	512
Ga0102779_1004681	Not Available	631
Ga0102779_1125649	Not Available	763
Ga0102779_1144663	Not Available	531
Ga0102779_1149673	Not Available	603
Ga0102779_1174719	All Organisms → cellular organisms → Eukaryota → Sar	525
Ga0102779_1182525	Not Available	748
Ga0102779_1201889	Not Available	558
Ga0102779_1209115	Not Available	511
Ga0102779_1220444	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	599
Ga0102779_1222901	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68	690
Ga0102779_1226815	Not Available	731
Ga0102779_1243709	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	544
Ga0102779_1249106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	643
Ga0102779_1249930	All Organisms → Viruses → Predicted Viral	1028
Ga0102779_1252595	All Organisms → Viruses → Predicted Viral	1064
Ga0102779_1260835	Not Available	559
Ga0102779_1263361	Not Available	625
Ga0102779_1263622	Not Available	759
Ga0102779_1264371	Not Available	550
Ga0102779_1268683	Not Available	558
Ga0102779_1271440	Not Available	757
Ga0102779_1275133	All Organisms → Viruses → Predicted Viral	1193
Ga0102779_1275756	Not Available	696
Ga0102779_1276088	Not Available	829
Ga0102779_1277552	Not Available	619
Ga0102779_1277865	Not Available	954
Ga0102779_1280700	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp.	945

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102779_1000542	Ga0102779_10005421	F016979	MAENTAPLEGVMEQNVIYVALFIPKEKRNLYVKSLKKFI*
Ga0102779_1004681	Ga0102779_10046811	F005911	VSLTTLSEDSKQRVAHLYNAYQMGQSIKGKIDGADINQARLGGSTEAELEAPIDDLFHNAQFVTLKEMVKKAVIIVSDDPTATTRVGTDTGYDLDNSGVLIKFADVDGTVIDDGTGGDTLVADVHLFVNLAGTADATTNAPYTAGEPFYYILMDDVTAGFNDASKRTIDLTQFPTGILATNDGGPQAEVSVVLPQDSEE*
Ga0102779_1010940	Ga0102779_10109401	F097482	LFSSQNYISYNEVNLANYAQACFDKAMAEIVSKAITTNLLLQLIMNELILLKETLLD
Ga0102779_1125649	Ga0102779_11256491	F005911	MSVKTKLLNILNSKKGNALLLATAGTIAATFGVYFFVTLTTLSEDSKQRVAHLYNAYQMGQAIKAKIDGADINQARLGSGTENDIEAPIDDLFHNGNFVTLAQMVKKAVIIVADDPTATARSGSDMAYDLTNSGALIKYADAAGNVIEADSDDGSDSVPIVTDVQVFVNLAGTADATTNSPYTAGEPFYYILMDADTAGLTASDITVDATQFPTGILATNDGGPQAEVSVIL
Ga0102779_1144663	Ga0102779_11446632	F018809	MGGTMIKNLIIIGLFTIVVTQTDIGITDVFNYVEIGLDKLQELVYTMKRSV*
Ga0102779_1149673	Ga0102779_11496731	F003068	IMRKILTLISVLSLVSFNAYAVDVSQLSVTAGVAHNSAVYGASAKETNRNESNVVKTVDKESGVFTESHQSYFMELNAGEFISLGFEHTPDSITTPENQRITNTNATTKVKVDFNDLNIAYVKLNVPGGLYVKAGVVETDLDIKESMASGSTYNNVSTEGTLLGVGYSRDLGDSPFSIRVEGSYMELDDVTTSNGVSATGG
Ga0102779_1174719	Ga0102779_11747191	F001145	ETNIQNLIILIGILIYANNVSFSVSLENRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVLYEKDKIDLVTNKYNLVKNGLLETFLTTENLIANFEKKAFITLQRYIIFVTASRILRKFLFLSDEEQSKLIEVTISKLGGV*
Ga0102779_1182525	Ga0102779_11825251	F005911	MLKNKILNFLNSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSIKAKIDGADINQARLGSGDEDQIEAPINELFHNGNFIKLSEMVKKAVIIVSDDPTATARKGYDIGYDTENSGVLIKFAAADGNVIQPDQGDADDTIVADVHLFVNLAGTADTDANAPYVDGTPFYYILMDATTAGLADSLETINSTIYPTGILATNGGGPQAEVSVVLPQ
Ga0102779_1201889	Ga0102779_12018892	F046429	IIEGDLIVAKNVVTEARRIIGSVGDILVESTKRQVLKG*
Ga0102779_1209115	Ga0102779_12091152	F007756	MTKLNTLKRFYVNVKFEKYGTYTIEARSKEHALEIYNDGNYGWSDYSEDFGEFNEVVEDVEEEVFADTQLTLSGVFS*
Ga0102779_1220444	Ga0102779_12204441	F059045	LGDEIPKEDVQKMFAEICDPEDEDGLFPYMSFLDRLTGKA*
Ga0102779_1222901	Ga0102779_12229012	F007173	MQTTTTKAVISRDKLMEYIHEERDLLMGLQDDLSDMLSATGKFSITLDEIVQSFMPYIPLYLIENEDEIKQAFPDRITDDEYIFIYDKDMTPNEITLNVEWRD*
Ga0102779_1226815	Ga0102779_12268151	F003068	INIRITTMRKILTIISMVTLVSFPVKAVDFDFGSVSVTGGIALNSAVYGASAKETNRDESNVIRTVNKESGVFTEDHQSVFGEVNLGEFVSLGFEHTPDSITTPENRRTVQADGNSTAGTTTVSVDFNDLNVAYLKFNLPGGMYLKYGYVDVNLDIKESMASGSTYANVGTEGTLAGIGYSRPLGDAGLALRVEGSYMSLDDVTTSNGVSASGATVANGGRNQVDASNLEGLNGKIALTYTFG
Ga0102779_1243709	Ga0102779_12437092	F049701	VRPWDKSEYTELSDLMEQAKRYEVIEDDDFKMTIDYQNMTSIFEVK*
Ga0102779_1249106	Ga0102779_12491062	F025306	MKPILFTEAELETIERAMDDYVSYADPDTPASDLIGGLPIMDRYNSIMEKITTAYCDL*
Ga0102779_1249930	Ga0102779_12499301	F049702	IDFDKKELHDIYSALQYSRLEIGFESKSEEELYNRLTKLMDKVAKLRQVCDCQQNVSK*
Ga0102779_1252595	Ga0102779_12525951	F025306	TEAELETIERAMDDYACYDDPDTPASDLIGGLPVMDRINSIMEKITTAYCDL*
Ga0102779_1260835	Ga0102779_12608352	F006348	MEVSKMQKFYIVENLEFDSKFKTPEEIEDLKWKQDQAIGVWSSVGKTEDERINDLFNKVQDYMGVYLTSLSYCNNRPHPLTAFK*
Ga0102779_1263361	Ga0102779_12633611	F006348	MNKKYIVENLEFDKKFKNEKEIEDLNFKRVNAIGIWDIEGKTEDERVSKLFDKVQDYMGVYLCSLSYCNNRPHPLTAFK*
Ga0102779_1263361	Ga0102779_12633612	F008889	MTYTTEQFEKDVAGLRALIKMCDDLEKENDRKTNALIDQINGENPFAWRAN*
Ga0102779_1263622	Ga0102779_12636221	F013897	LMNTIDFATDNDASYEEYTIIKSGTSDLELIKDILYNEYIHQTQ*
Ga0102779_1264371	Ga0102779_12643712	F028201	LPPFKMINYDQKQSKEIYDALLDSKVDLLEYFLGPDPKKSSYYRKHVKRYRVQSILNDY*
Ga0102779_1268683	Ga0102779_12686832	F010476	FDYKIIAYNKLGKVQETENLFCAPDEIDDVMYTMSEQYGYAEALDTMDTHCGEYGERPLSLGERRYF*
Ga0102779_1271440	Ga0102779_12714401	F090441	ELATLSFPDSLALGALITRRVIVGCQFPDAALNRKNDCDTFRFHSGT*
Ga0102779_1275133	Ga0102779_12751332	F004869	MTCDTEHYYALHTFLEDDELHEIWNIVEKAMNREGYDVSNSELSMRLYDSELEENIEHDMENLLSSLSEGKDQPVEKAAHGHVRKDLDTL*
Ga0102779_1275756	Ga0102779_12757561	F071278	GAIAATFSVYFFVSISTLSDDSKQRVTHLYNAYQMALSVKGKINGDSMQANKLDGTNVEDDIEDSLDPLFHNGSFITLREMVIASIIIVQNDPTTTSERGKKIPYDVDNSGVLIKFANSTDAVIAPSDTNRAIEDRANLAKVHDLHLFVNLAGTTDIDSRPNGPYAVGDPFFYVVMASDSDTGRTDGLTDALKTVNLTQFPTGMLATNQGGPQAETSVILPQDFD*
Ga0102779_1276088	Ga0102779_12760881	F034213	MTIKTLKNFASMDQSFKEWLTTCPKEYIWQINEVTEDLEGNFTFR
Ga0102779_1277552	Ga0102779_12775523	F029129	MTNRTFIIEVKEDGVSKVNKYGDKLHSLIDDLGWEYQRMGRSGRETYDEICHLLGMIPEDEVYME
Ga0102779_1277865	Ga0102779_12778652	F008624	MNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREQDFIDAHFHVVVYN*
Ga0102779_1280700	Ga0102779_12807001	F008624	HRYYLFPMNPQAHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREDDFINAHFQVITY*