3300001823: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o

Overview

Basic Information

• IMG/M Taxon OID: 3300001823
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056134 | Ga0016827
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM25, ROCA_DNA015_2.0um_2o
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13905559
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 10.2885
  • Long. (^o): -54.512
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F004358	Metagenome / Metatranscriptome	442	Y
F005911	Metagenome / Metatranscriptome	386	Y
F028825	Metagenome / Metatranscriptome	190	N
F031118	Metagenome / Metatranscriptome	183	N
F033052	Metagenome / Metatranscriptome	178	Y
F046429	Metagenome / Metatranscriptome	151	N
F047358	Metagenome / Metatranscriptome	150	N
F051986	Metagenome / Metatranscriptome	143	Y
F056303	Metagenome / Metatranscriptome	137	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM25_100431	Not Available	613
ACM25_101107	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	705
ACM25_103735	Not Available	605
ACM25_105872	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	620
ACM25_106495	All Organisms → cellular organisms → Bacteria	612
ACM25_110877	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	584
ACM25_111038	Not Available	730
ACM25_112004	Not Available	886
ACM25_112789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	581
ACM25_114841	Not Available	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM25_100431	ACM25_1004311	F102647	IQEAVKNTKAKKVLEGLRNHLAVDSALEKESIKEAVIDGHNQINEASSKLESVAKENAVLKEELDQVKADLVLEQKTAGLDKRAQKYARKVLDGKSAEFINENFDYTMKLFKKKESNRLDMLKEEALSTRDNVDRVIYEHNTEEVIEESSNPYMDELSKY*
ACM25_101107	ACM25_1011072	F033052	ANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
ACM25_103735	ACM25_1037351	F046429	EIAIIEGDLIVAKNVVTEARRIIGNVGDILVESKKRQVLKG*
ACM25_105872	ACM25_1058725	F093788	ITTMTEFNPRSYILTQLAYAEEQLMIADDMYSKITWGNRCDALEAALADLEAA*
ACM25_106495	ACM25_1064952	F031118	VVTQSRCEALAETLAEAEKLKMYRSDGTTYCEKCDSLVVRIQSALADVHVEDLTADEIEIIKSIKEKVISEEVFAKSSS
ACM25_110877	ACM25_1108771	F063725	TGTPAVRPEYYIRERRVVRAEITVERTINMTGLGGTGLIGSAFYIDNVFSD*
ACM25_111038	ACM25_1110381	F005911	KGKKGNALLLATAGAIAATFSVYFFVSLTTLNEDSKQRVAHLYNAYQMGQALKAKIDGADINQARLGSGTEDDLEAPIDSVFHNGEFITLKQMVKKAIIIAADDPTATSRAGVDMAYDLDSSGVLIKFADADGNVIAPTETGNGLDTIVADVQLFVNLAGTPDVASNSPYTDGEPFYYILMETATSGLAADDITVDLVQFPAGILATNDGGPQAEVSVILPQDDED*
ACM25_111880	ACM25_1118801	F028825	MSSTALQEALDSFTELTDTLQECIKSHDIEGAMTLAKERHDALVNLLEDANIDQTQRANCADTTLGHLLKEQLLAKSNSDQNR
ACM25_112004	ACM25_1120041	F047358	MNKKYIIIGAVVAAIALFTMCGKCEAQEVVKEKNWELNTEVGYYDKRISGGLYGAQDSAYVKASTKLGNFQGLAFVGSLEYVNTEDYQLHGTIGTYLNTVVGGIDTRLVVHTGENADTTFELNGAYDLNWFEFVDTSVTVAFEDGSEAGTSTDSIITTPAFNVSKTFDAKYVDVTVGGEYGQSFGYDEDFEYLHGYVRVKSTINNVIPVFVQFNALKNDLGIVNDISSEGTDGDFDTSVTVGLAYSF*
ACM25_112789	ACM25_1127891	F004358	QLNCQTSYKYLYNKNDMFGLITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANAAFQKAVFEGGSEQESMFTRGTRRIIALIGMFNFATISILCTIWPSTTLVTFTPPENKESISILFGLVKFPRGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
ACM25_114841	ACM25_1148411	F001478	LRGKVVAVSGGVDNENRNIVVEHKNGKVHQRWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPSGRYLDIPDNRNLAIKIKNGRKQQVWYFHQQSLTIRTYSNISSRW
ACM25_117492	ACM25_1174921	F056303	SGHVWDYGADNCIKYEINMGVHSKYTGTYYVKCDAVDCCKDISPAGKIPDVKKWDIGQAKKSTITHMEATDLDDLDGHVTGADTWLEDISALKAHFKYTYYVHQAENGDIISHAIDYEAPTVAPGRILYGNFTVKHLEELDAFREVFKAPAACMANNVLHCNDETMKKWDAKFQGRSTFSAVAV*
ACM25_118356	ACM25_1183561	F005911	KKGGGQKDNPTNKKKGETMCLKDRLLQMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGSKTEDDIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATARGGVDTPYDLVNSGVLIKYADAGGQVITPTTTGSGTATIVADVQLFVNLAGTPDADSNSPYVDGEPFYYILMDANTAGLAASDHTVDLDQFPAGILSSDDGGPQAEVSVVLPQDAED*
ACM25_120511	ACM25_1205112	F051986	MTTMSITAITCSICDKVANFFKDVYRNIKFGMQMSANRRVARELVHLGFHHQKEMNQILQRMNDQAINEYHKRY*