3300002691: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055323 | Ga0005231
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39179566
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	5
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005848	Metagenome / Metatranscriptome	388	Y
F012639	Metagenome / Metatranscriptome	279	Y
F016399	Metagenome / Metatranscriptome	247	Y
F021318	Metagenome / Metatranscriptome	219	Y
F046429	Metagenome / Metatranscriptome	151	N
F052640	Metagenome / Metatranscriptome	142	N
F066454	Metagenome / Metatranscriptome	126	N
F068117	Metagenome / Metatranscriptome	125	N
F083743	Metagenome / Metatranscriptome	112	N
F090441	Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005231J37286_1006928	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	778
Ga0005231J37286_1008058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	835
Ga0005231J37286_1008107	Not Available	676
Ga0005231J37286_1010689	Not Available	702
Ga0005231J37286_1013312	Not Available	951
Ga0005231J37286_1015471	All Organisms → Viruses → Predicted Viral	1977
Ga0005231J37286_1026616	Not Available	937
Ga0005231J37286_1034391	All Organisms → cellular organisms → Bacteria → Proteobacteria	679
Ga0005231J37286_1034812	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	576
Ga0005231J37286_1034911	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005231J37286_1006928	Ga0005231J37286_10069281	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELVNLWNELTDYYLPYEGDKEFTESSSLSSLIDCCE*
Ga0005231J37286_1008058	Ga0005231J37286_10080582	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAGGAGSATVVAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSN
Ga0005231J37286_1008107	Ga0005231J37286_10081071	F016399	SSIRRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005231J37286_1010689	Ga0005231J37286_10106892	F052640	MVKIQTIDELEALYYGYNRNSLRKADAPVTTSTTGSFNAVFGAYAW
Ga0005231J37286_1013312	Ga0005231J37286_10133122	F090441	ELATLSFLDSLALGALITRRVIVGCQFPDAAPHRKNDCNTFRSHSGT*
Ga0005231J37286_1015471	Ga0005231J37286_10154713	F021318	MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEP
Ga0005231J37286_1026616	Ga0005231J37286_10266161	F083743	RRLAAEKKLLAALMSRVEGLRNFIARIKLTRKRLRKHIIAVNALFKLKFDENMANVGAATQVLADIGHLKLAPYNPKLNKIKQFKSFSEDTTSLIQLTTKALKGKTNCADKDECSGATKLAFQAYRKGLELNKAMGVNFEKERKVLGGMRDAIRQLLDKKTAKLNKLLAQIERIKGAMADDDYDAAKKSLGEHLKILARSCAGMGAFEKQLKQKTTKLLGAMDNKGELPAKAPEVKADATGTEQ*
Ga0005231J37286_1034391	Ga0005231J37286_10343911	F046429	QITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0005231J37286_1034812	Ga0005231J37286_10348122	F005848	MVLPVQRTYTATIAALNAPVFMVDQQTLQNNFLTLTPNVLQDCVNLVDPAATQSLQYTLVKNGNATSVRAFSSAISATTSGRVPIGPVSMSSGSYQWQAVQTAGALFNGSILVRYGSPLN
Ga0005231J37286_1034911	Ga0005231J37286_10349111	F068117	MSENVKTINPAQAPTLEKSKSLGIAKLGDKPFYITGVNHNRGQPTQYTRADQIGEDGKTDYYTIKVETPIELEYKDEGKVPIDNFFVTATVYQQVERIPNAIEGLNSGARLGPLKALKRESQKTGNPYWC