3300002682: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_120m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002682
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055322 | Ga0005230
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_120m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23477755
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F012639	Metagenome / Metatranscriptome	279	Y
F015154	Metagenome / Metatranscriptome	257	Y
F015413	Metagenome / Metatranscriptome	255	Y
F016399	Metagenome / Metatranscriptome	247	Y
F042625	Metagenome / Metatranscriptome	158	Y
F046429	Metagenome / Metatranscriptome	151	N
F081198	Metagenome / Metatranscriptome	114	N
F098669	Metagenome / Metatranscriptome	103	N
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005230J37285_100022	Not Available	514
Ga0005230J37285_103037	Not Available	539
Ga0005230J37285_103352	Not Available	1337
Ga0005230J37285_103691	Not Available	679
Ga0005230J37285_106311	Not Available	1115
Ga0005230J37285_107210	Not Available	1022
Ga0005230J37285_107251	All Organisms → Viruses → Predicted Viral	1122
Ga0005230J37285_108437	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522
Ga0005230J37285_109112	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	769
Ga0005230J37285_110000	All Organisms → Viruses → Predicted Viral	1171

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005230J37285_100022	Ga0005230J37285_1000221	F098669	METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGPGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005230J37285_103037	Ga0005230J37285_1030371	F101265	GNEISGLKLATDLRLNRTYHCRITDVGEDYDLRIIINKSIGVYIVKTSSSEIVETN*
Ga0005230J37285_103352	Ga0005230J37285_1033521	F081198	EVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYIIVSTVAT*
Ga0005230J37285_103691	Ga0005230J37285_1036911	F016399	RSSIRRVARRGSRGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005230J37285_106311	Ga0005230J37285_1063111	F006550	DKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGISTPTDWT*
Ga0005230J37285_107210	Ga0005230J37285_1072103	F042625	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLE
Ga0005230J37285_107251	Ga0005230J37285_1072511	F015154	GSTVTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
Ga0005230J37285_108437	Ga0005230J37285_1084371	F046429	MRASGQITDQEIAILEGDLIVAKNVVTEARRIIGKANDVLVESTQKRVLRG*
Ga0005230J37285_109112	Ga0005230J37285_1091121	F015413	VESLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0005230J37285_109112	Ga0005230J37285_1091122	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAAGAGSATVIAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSN
Ga0005230J37285_110000	Ga0005230J37285_1100001	F081198	ERIEKSNEDTLKAVIETVKDAWQPKSEVAESXNQGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*