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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300018938 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117946 | Gp0217186 | Ga0193542 |
| Sample Name | Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399742-ERR1328124) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Canada's Michael Smith Genome Sciences Centre |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 205531014 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 31 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri | 1 |
| Not Available | 9 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 2 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Indian Ocean: TARA_039 | |||||||
| Coordinates | Lat. (o) | 18.5839 | Long. (o) | 66.4727 | Alt. (m) | N/A | Depth (m) | 25 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000200 | Metagenome / Metatranscriptome | 1633 | Y |
| F001319 | Metagenome / Metatranscriptome | 723 | Y |
| F002093 | Metagenome / Metatranscriptome | 594 | Y |
| F003423 | Metagenome / Metatranscriptome | 487 | Y |
| F003693 | Metagenome / Metatranscriptome | 473 | Y |
| F005911 | Metagenome / Metatranscriptome | 386 | Y |
| F008029 | Metagenome / Metatranscriptome | 340 | N |
| F018550 | Metagenome / Metatranscriptome | 234 | Y |
| F021314 | Metagenome / Metatranscriptome | 219 | Y |
| F023949 | Metagenome / Metatranscriptome | 208 | Y |
| F026894 | Metagenome / Metatranscriptome | 196 | N |
| F028358 | Metagenome / Metatranscriptome | 192 | Y |
| F028521 | Metagenome / Metatranscriptome | 191 | N |
| F041790 | Metagenome / Metatranscriptome | 159 | N |
| F046429 | Metagenome / Metatranscriptome | 151 | N |
| F048369 | Metagenome / Metatranscriptome | 148 | N |
| F054086 | Metagenome / Metatranscriptome | 140 | N |
| F058202 | Metagenome / Metatranscriptome | 135 | Y |
| F060038 | Metagenome / Metatranscriptome | 133 | Y |
| F062805 | Metagenome / Metatranscriptome | 130 | N |
| F065835 | Metagenome / Metatranscriptome | 127 | N |
| F066837 | Metagenome / Metatranscriptome | 126 | Y |
| F072425 | Metagenome / Metatranscriptome | 121 | N |
| F082267 | Metagenome / Metatranscriptome | 113 | Y |
| F087146 | Metagenome / Metatranscriptome | 110 | N |
| F090441 | Metatranscriptome | 108 | N |
| F091884 | Metagenome / Metatranscriptome | 107 | Y |
| F102591 | Metatranscriptome | 101 | N |
| F103879 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0193542_10002042 | All Organisms → Viruses → Predicted Viral | 1804 | Open in IMG/M |
| Ga0193542_10004693 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 | 1305 | Open in IMG/M |
| Ga0193542_10005253 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri | 1250 | Open in IMG/M |
| Ga0193542_10006625 | Not Available | 1145 | Open in IMG/M |
| Ga0193542_10007514 | All Organisms → Viruses → Predicted Viral | 1090 | Open in IMG/M |
| Ga0193542_10009111 | All Organisms → Viruses → Predicted Viral | 1012 | Open in IMG/M |
| Ga0193542_10009224 | All Organisms → Viruses → Predicted Viral | 1008 | Open in IMG/M |
| Ga0193542_10010146 | Not Available | 967 | Open in IMG/M |
| Ga0193542_10010273 | Not Available | 961 | Open in IMG/M |
| Ga0193542_10010593 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 948 | Open in IMG/M |
| Ga0193542_10012804 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 866 | Open in IMG/M |
| Ga0193542_10014571 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 812 | Open in IMG/M |
| Ga0193542_10015932 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata | 778 | Open in IMG/M |
| Ga0193542_10016152 | Not Available | 772 | Open in IMG/M |
| Ga0193542_10016512 | Not Available | 764 | Open in IMG/M |
| Ga0193542_10017938 | All Organisms → cellular organisms → Bacteria | 733 | Open in IMG/M |
| Ga0193542_10020840 | Not Available | 680 | Open in IMG/M |
| Ga0193542_10021520 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 669 | Open in IMG/M |
| Ga0193542_10021852 | Not Available | 664 | Open in IMG/M |
| Ga0193542_10022486 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 655 | Open in IMG/M |
| Ga0193542_10025174 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 620 | Open in IMG/M |
| Ga0193542_10026570 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | 604 | Open in IMG/M |
| Ga0193542_10030025 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 568 | Open in IMG/M |
| Ga0193542_10031493 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 555 | Open in IMG/M |
| Ga0193542_10034873 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 527 | Open in IMG/M |
| Ga0193542_10035126 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 525 | Open in IMG/M |
| Ga0193542_10035243 | Not Available | 524 | Open in IMG/M |
| Ga0193542_10036916 | Not Available | 512 | Open in IMG/M |
| Ga0193542_10037551 | All Organisms → cellular organisms → Bacteria | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0193542_10002042 | Ga0193542_100020422 | F062805 | MCIIKIIQDGDISNNEIESLWKNNPHGGGIGLIDNDLNLRVPIRTHEYELFRDELQKLLKEQNFKTLVFHMRLRSKGSLDTINVNPIYVNEKTVMFHNGTLSGFDNDFYSDSLMYVFNVLHSIKELDIENKNHIKQIKDSLLNNPSRLVFLQEGKAEPLIINNQNIGYWLKNSKQWSSK |
| Ga0193542_10004693 | Ga0193542_100046933 | F026894 | RVQTDKNVVQKNNRVQSPVAGVSRKKGNDSNRVKLTSDDINTAKTFGIDINDEAALKRFAKEVKSFSSNT |
| Ga0193542_10005253 | Ga0193542_100052531 | F087146 | VDAFDRKVTFTLDASWIDQRLRAANPDFFTSPISDGFIVRHNYKSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGESMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYSGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPNFTVGGLANDFGFPHEMKGWIRYLNFYDGALDESQIEAMYVRNTPWP |
| Ga0193542_10005789 | Ga0193542_100057894 | F000200 | GNGHVFEEFVEAGTTTSRCGCGANATKIVSATRHMLDGSSGDFPGRHMKWVKEHEEAGRKGRESQER |
| Ga0193542_10006625 | Ga0193542_100066253 | F062805 | MKGGVMCIIKIIQDGDISNNEIESLWKNNPHGGGIGLIDNDLNLRVPIRTHEYELFRDELQKLLKEQNFKTLVFHMRLRSKGSLDTINVNPIYVNEKTVMFHNGTLSGFDNDFYSDSLMYVFNVLHSIKELDIENKNHIKQIKDSLLNNPSRLVFLQEGKAEPLIINNQNIGYWLKNSKQWSSK |
| Ga0193542_10007514 | Ga0193542_100075142 | F028521 | MATYTSGAINEVLVGTGVLYVADRTASGLAFPGDDGSGNWQSVSTASAAWRDIGYSEDGWTLEMDRTFEDILVAEEIDPIKTIKTAQEARLMGELSQASLANLSVAMGQIDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLIAEGPGGADRHMQMPRVVSVGAFSMSHAKAPQKVVIATEFKLLVPDSTFNVGATGGKNHLFKIVDNTNDSTTFDVN |
| Ga0193542_10009111 | Ga0193542_100091111 | F028521 | MATYTSGAINEVLVGTGVLYVADRTASGLAYPGDDGSGNWQSVSTASAAWRDIGYSEDGWTLEMDRTFEDILVAEEIDPIKTIKTAQEARLMGELSQASLANLSVAMGQIDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLIAEGPGGADRHMQMPRVVSVGAFSMSHAKAPQKVVIATEFKLLVPDSTFNVGATGGKNHLFKIVDNTNDGVQFDVN |
| Ga0193542_10009224 | Ga0193542_100092242 | F003423 | MNEFDAPDNGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGSLGLSTDKGFGKALKQVYDGPVNTESISQFAKDEYGWEPTGQVQEVTQPEPAPQVQDDARSRVAALDANSNSDVPMDINDELVAALKGASVKDSLRAKLTIMDNEKQNK |
| Ga0193542_10010146 | Ga0193542_100101462 | F065835 | MTEENMDTNEGIKGLREKLKSVEQENKELKNVVKTSLFKDVGLDPNSGTGKMAFDLYDGKPDTAELGTWLKETYNIDTEVQQNNEVAAAKIADSDSKLETIQQNSMATQPEDWTQKMQDIISSDQTSVKDSLRAKLALQEINKNN |
| Ga0193542_10010273 | Ga0193542_100102731 | F090441 | LATLSFLNSLALGALITRRVIVGCQFPDAVSYRKNDCNMFRSHSET |
| Ga0193542_10010593 | Ga0193542_100105932 | F021314 | MEENTQIDATEAVDESTDGIKQLREEYKKLKAENKQFKADAMNNALGSLGLSADKGIGKAVTKLYDGDVTVDAIKEFVAQEFGEVSNSEQPSATPEVNNNVVEAQSRVEQLNKIGVNAEPVDVGQEFLNFVKDSNTKPKDSINAKLRMIETLKEQNK |
| Ga0193542_10012804 | Ga0193542_100128042 | F082267 | MDFYDEGSSWQIITFTVLTLGALIFQIGTKFDQWKNPEKYEFDWKVGLEEE |
| Ga0193542_10013751 | Ga0193542_100137512 | F023949 | MSKENIGKFVNSLQKGDNAQAGEDLKNALADKVSSALDDAKTDVARSVFTGQQGADALEANVFSGNDISAETPATPEASSDEVAQ |
| Ga0193542_10014571 | Ga0193542_100145711 | F046429 | GIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG |
| Ga0193542_10015932 | Ga0193542_100159321 | F041790 | GTLGPSAMPTAAPTAAGALSLCARDDGTKMAVVSGSLTFGATRDDDDEEGCLMRSGDDRFSSAYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTLSVEVLREDGSRSTVASYAPAFALEPGTWYTVSASAVGNRITCQIMRGDWVLGSAEAVDDTYGDGYFATWNYKDDSGPHWWGDLRVVDAPPPAARRLRGSR |
| Ga0193542_10016152 | Ga0193542_100161521 | F058202 | MKSLRQIVELKKIDLVPDPELQAGTVSNYANPKSDAERRFVEKHVDSIQKTLHPAFKNEAEQKAVFSGTVEKDKTHDNAGAGHYQDGEDAEVYEAAEAAVDFVRDNLTEDNLKAYDELLDNDPDAAVEFAMETVQEMAG |
| Ga0193542_10016512 | Ga0193542_100165121 | F005911 | ARGVVKKIIRQTKKKGETMCLKDRLLHMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGGKTEDDIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATARGGVDTPYDLVNSGVLIKYADSAGAVITPTTTGSGTATIVADVQLFVNLAGTPDADSNSPYATGEPFYYILMDADTAGLTTDDHTVDLVQFPAGILATNDGGPQAEVSVVLPQDDE |
| Ga0193542_10017938 | Ga0193542_100179381 | F008029 | LHKGKTLNLVGLKELSELLDVSYDTLKVWKNRNRLPDPFQVISGTPVWDWDESEEDFRSIQKNENSGRPRKPKISIAGGLVEIDLNENKKDKDGNVSIRVMGKSFVDIQTESAESNSKSKNVSIRVLGKKVVDINTDDFIEVDKEDKSSENSXSKN |
| Ga0193542_10020840 | Ga0193542_100208402 | F072425 | MNIEFSSSSMLQSPIVVDTEAQTAVLTYNNGKEYTYSINDTFVSDLQETINNESSVGKFILAARSDQRLQQVTV |
| Ga0193542_10021520 | Ga0193542_100215201 | F103879 | PFTKETVYHASADALVTWGVFDLLSEFAFFSQMNRKLQGTQNFVIDSQTCYDTYAHEFAEQLGDRLSPYGHHTHLSELTVGLNNTSLNLRLMTHFRRVVQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKHKREKETRLSLRNWSYRQELALDRRNTYWRERKKMRLYSIEYNLKNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATR |
| Ga0193542_10021852 | Ga0193542_100218522 | F048369 | MKEDRDSFIEKLADNTPHEGQFDKLKEAEVHDAEEDLVAGKTFKKLKDEVKRGEK |
| Ga0193542_10022486 | Ga0193542_100224863 | F066837 | RVTDLVSDILAGNNADAQQKFNDEMTARAQDAVDGMKAGIATNVFDKHVVDPDMEPQGVSLEDSLVDIDTTTGRPVEEPTEGETNEDI |
| Ga0193542_10025174 | Ga0193542_100251741 | F018550 | AYYNDTNGDGSGSTQVISFATISGALKRMYDNHAPMTQPVLCVSPKQLLDLNNELVKGTVDIAGAILPRDRSVAGVDIDTVITPFGSIGLMVIDPDIMPDNTAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS |
| Ga0193542_10026570 | Ga0193542_100265701 | F002093 | MAYDGTLPAGGHGNFVSPNTAHEADGVEVDFITVDYISAMNAEVTHPLASANTAGLQLSMEAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNALTPDKVTATISSATAADRDMGDTSVGA |
| Ga0193542_10030025 | Ga0193542_100300251 | F102591 | PLLAAYNGFYGVTLYHNWVTYYGPKGIMPYFLKTEGPVALMAWRMLGCLLLGITYGLLTAGPKDKTALKIATVGQAMMLPLMAMAGFGTDAATYAQTMWKTQLVVHAAMTYVGYSASQPTKTRSSSRRR |
| Ga0193542_10031493 | Ga0193542_100314931 | F003693 | GRLGWNSTSTLFFCYSKEDMIKSKLALIDVSADASNSLGVQTEGMLLCGIQFPAAMTGSNITFDFALDNSTWVDVKETDGTDTSYTVSAGDVLRVDPSGWAFASNGYIRVTSDGTEAADRSIILHFRHS |
| Ga0193542_10034873 | Ga0193542_100348731 | F001319 | GLGIGYAIGDNKXKKLWSIILLCGVVFAQLPQPTLVGQDDLKVPTLSINNFVNQAEIEGLEDTRVFLGITNILTENVMDSRYDLVEQDSDFELTARVIYLGRPRTATTFLGLFRRETTTTEVRVVVELKNKKTGVVRTGNGTGTIDREISSTGFQINEELPFDRSELGGALKEAI |
| Ga0193542_10035126 | Ga0193542_100351261 | F028358 | HAPMSQPVLCVSPKQLLDLNNELVKGTVEAAGAILPRDRSVAGVDIDTVITPFGSIGLMVIDPDIMPDNTAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS |
| Ga0193542_10035243 | Ga0193542_100352432 | F054086 | MDENKLEVTIREATNGWIVELNREGETIEYIFTRPNPAINLVRKVMKGELDPFNEGEG |
| Ga0193542_10036916 | Ga0193542_100369161 | F060038 | MAYALDNPIKKISQMGDTNSMWYYADGDAIGTIDDNE |
| Ga0193542_10037551 | Ga0193542_100375511 | F091884 | GAFCWVGHGTYTWSIGYEPNIVHATRCVRKAKRDYGLKGWQIIPVSIFDIEDTEHWAFDGGTLVDTDTQDKNSEDYKQRHLYHEYAGCKSLKKIEDLEVVS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |