7000000676: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792

Overview

Basic Information

• IMG/M Taxon OID: 7000000676
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053252 | Ga0031051
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765013792
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129907092
• Sequencing Scaffolds: 23
• Novel Protein Genes: 25
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. KLE 1280	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F055792	Metagenome	138	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F084342	Metagenome	112	N
F085821	Metagenome	111	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3680823	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	562
C3688766	Not Available	584
C3690452	Not Available	589
C3701628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 275	625
C3736482	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	792
C3737146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	797
C3748379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	881
C3755057	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	945
SRS018665_WUGC_scaffold_19579	All Organisms → Viruses → Predicted Viral	1117
SRS018665_WUGC_scaffold_21202	All Organisms → cellular organisms → Bacteria	7639
SRS018665_WUGC_scaffold_21995	All Organisms → cellular organisms → Bacteria → Proteobacteria	1332
SRS018665_WUGC_scaffold_23797	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2028
SRS018665_WUGC_scaffold_28038	All Organisms → Viruses → Predicted Viral	3477
SRS018665_WUGC_scaffold_36169	All Organisms → Viruses → Predicted Viral	3539
SRS018665_WUGC_scaffold_38996	All Organisms → Viruses → Predicted Viral	3215
SRS018665_WUGC_scaffold_41302	All Organisms → cellular organisms → Bacteria	912
SRS018665_WUGC_scaffold_51550	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5975
SRS018665_WUGC_scaffold_56547	Not Available	767
SRS018665_WUGC_scaffold_59418	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1018
SRS018665_WUGC_scaffold_59576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. KLE 1280	3994
SRS018665_WUGC_scaffold_60358	All Organisms → cellular organisms → Bacteria	43920
SRS018665_WUGC_scaffold_60468	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	629
SRS018665_WUGC_scaffold_60484	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3680823	C3680823__gene_179529	F098763	MDRRASLRILSPALHLTMKLFEAVVRTTISYDPSDEVESKRGMNAIPT
C3688766	C3688766__gene_182975	F085821	TKKQQTTVAKFIEKEFKFTRQSDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESTKRQILEQDKDKHDEAYIDEWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAETQSHIAL
C3690452	C3690452__gene_183713	F085821	TKKQQTTVSKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANINKTLSIIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLK
C3701628	C3701628__gene_188584	F070224	VYIPPISGEPIYLLASPLKSGHTPGSKIRTRDWVKVDFSDQNNLHIMGFGDSLILENGFVYKADRYPNAKEYELYYKGAGEEITKEDFDSIKFTRMPTALREIKKYKLPRARRTTGEVDRWQHPHLFVVEHDKKAGRYYKYRIALVIYIDYDHPEAHMIH
C3736482	C3736482__gene_204314	F101360	MSKEDALRRAAIAAHVAKVASQEKKRALSELKEVMPPGDTSRPMIDGMQVGTISVSAPTPKYQVVDEKALVTWLEWNKPEAVHKVPAPWFTAPASLDGFIKQTGEVPDGVELVQGEPRISVRVSGAQEENLRDLISTGDISLIEIEGGDA
C3737146	C3737146__gene_204591	F070224	VYIPPISGEPIYLLASPLRPVKTRGSKIRTRDWVKVDFSGQNNLIVRKVGGSLIIENLFVYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFARMPTALREIKKYKLPRTRRTLGEVDRWQHLHLFVVEHDKKAGRYYKYRIALVIYMDYHHPEAYHPGICIIH
C3748379	C3748379__gene_209860	F064818	PNNINGNTPKLYFTKHKFIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
C3755057	C3755057__gene_212983	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYPRDVQVRYYYTITDRILTLKAQVNRELHPPMDQNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL
SRS018665_WUGC_scaffold_19579	SRS018665_WUGC_scaffold_19579__gene_21265	F074985	MSSGLLTRSVISEEDTMELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS018665_WUGC_scaffold_21202	SRS018665_WUGC_scaffold_21202__gene_23149	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPERILNLRRQRHERHVILRVFINGSTYNIDPSIDIGLASTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRELFRGNPKEFYTAIDKWLADTRAHQSS
SRS018665_WUGC_scaffold_21995	SRS018665_WUGC_scaffold_21995__gene_24082	F103431	MNKYSTTTLMIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG
SRS018665_WUGC_scaffold_23797	SRS018665_WUGC_scaffold_23797__gene_26087	F084342	VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS018665_WUGC_scaffold_28038	SRS018665_WUGC_scaffold_28038__gene_31496	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTEAR
SRS018665_WUGC_scaffold_36169	SRS018665_WUGC_scaffold_36169__gene_41980	F018385	MMAEYENQWGPYKEHSIEKDRNPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNVRILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLYHEEVK
SRS018665_WUGC_scaffold_36169	SRS018665_WUGC_scaffold_36169__gene_41983	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS018665_WUGC_scaffold_38996	SRS018665_WUGC_scaffold_38996__gene_45725	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDRFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNSNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK
SRS018665_WUGC_scaffold_41302	SRS018665_WUGC_scaffold_41302__gene_48759	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVIVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDKGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS018665_WUGC_scaffold_42256	SRS018665_WUGC_scaffold_42256__gene_49993	F055792	GVIAEAMVTRALKRDLAIDSTLEEVRTVFVDESDDGAEASTTWSRYPLETLQKEGYILFEGRMLTCEARGVDSRSSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS
SRS018665_WUGC_scaffold_51550	SRS018665_WUGC_scaffold_51550__gene_63040	F101360	VSKKSAARRAAIAAHIAKVASQEKKKALKELEEYMEPGDTTKPQVDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIREL
SRS018665_WUGC_scaffold_56547	SRS018665_WUGC_scaffold_56547__gene_71453	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIIPEDSILAGSNDVNYTVTGLNYARRPTQTVYMYFYKGHLRRIVFIFDDLDVLEQIESELEDKYGTMAEGMETSKMKSKVVFDAFTTLEVVRRFDYEGDVGFDHAYIIYSDKELDRARSAEKKSEI
SRS018665_WUGC_scaffold_59418	SRS018665_WUGC_scaffold_59418__gene_76842	F098763	MDRRASLRILSPALYLATKLFKAVVRTMISYDPSDEVEGKGGMNAIPTAVDE
SRS018665_WUGC_scaffold_59576	SRS018665_WUGC_scaffold_59576__gene_77140	F094006	MRGTLEPAGPTGALYEPTICVEAYIGYLQAGGIVRRCLFAFGGRDLLAVAELGAKAPYAIDMYDIALCEPLSELFAEELEYAFNFGA
SRS018665_WUGC_scaffold_60358	SRS018665_WUGC_scaffold_60358__gene_78882	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWATFDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKVS
SRS018665_WUGC_scaffold_60468	SRS018665_WUGC_scaffold_60468__gene_79202	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVANFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKNL
SRS018665_WUGC_scaffold_60484	SRS018665_WUGC_scaffold_60484__gene_79226	F022002	VTTPAEARAIIQRQGGKIILEDGIHAGSNDVSYIVSGLNYARRPTQTVDMFFYKGHLRRIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI