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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034197 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0135941 | Gp0396361 | Ga0370508 |
| Sample Name | Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02S_18 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 660739267 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 34 |
| Associated Families | 33 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → fen → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 64.9142 | Long. (o) | -147.835 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000982 | Metagenome / Metatranscriptome | 814 | Y |
| F002467 | Metagenome / Metatranscriptome | 557 | Y |
| F004409 | Metagenome / Metatranscriptome | 439 | Y |
| F006349 | Metagenome / Metatranscriptome | 375 | Y |
| F006851 | Metagenome | 363 | Y |
| F008056 | Metagenome / Metatranscriptome | 340 | Y |
| F008086 | Metagenome / Metatranscriptome | 339 | Y |
| F010860 | Metagenome / Metatranscriptome | 298 | Y |
| F012109 | Metagenome / Metatranscriptome | 283 | Y |
| F012202 | Metagenome | 282 | Y |
| F016989 | Metagenome | 243 | Y |
| F017058 | Metagenome / Metatranscriptome | 243 | Y |
| F019310 | Metagenome / Metatranscriptome | 230 | Y |
| F028627 | Metagenome | 191 | Y |
| F034611 | Metagenome / Metatranscriptome | 174 | Y |
| F036309 | Metagenome | 170 | Y |
| F036766 | Metagenome / Metatranscriptome | 169 | Y |
| F036770 | Metagenome / Metatranscriptome | 169 | Y |
| F039839 | Metagenome / Metatranscriptome | 163 | Y |
| F040197 | Metagenome / Metatranscriptome | 162 | Y |
| F046195 | Metagenome | 151 | Y |
| F047703 | Metagenome | 149 | Y |
| F057348 | Metagenome / Metatranscriptome | 136 | Y |
| F065834 | Metagenome / Metatranscriptome | 127 | Y |
| F066900 | Metagenome | 126 | Y |
| F071395 | Metagenome | 122 | Y |
| F085731 | Metagenome | 111 | Y |
| F087391 | Metagenome / Metatranscriptome | 110 | N |
| F091474 | Metagenome | 107 | Y |
| F093898 | Metagenome / Metatranscriptome | 106 | Y |
| F094959 | Metagenome / Metatranscriptome | 105 | Y |
| F097967 | Metagenome / Metatranscriptome | 104 | Y |
| F102913 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0370508_0009181 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp. | 2319 | Open in IMG/M |
| Ga0370508_0009799 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae | 2264 | Open in IMG/M |
| Ga0370508_0012688 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis | 2055 | Open in IMG/M |
| Ga0370508_0021236 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1684 | Open in IMG/M |
| Ga0370508_0027607 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1516 | Open in IMG/M |
| Ga0370508_0041361 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1287 | Open in IMG/M |
| Ga0370508_0042993 | Not Available | 1266 | Open in IMG/M |
| Ga0370508_0044962 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1243 | Open in IMG/M |
| Ga0370508_0058173 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1115 | Open in IMG/M |
| Ga0370508_0068053 | All Organisms → cellular organisms → Bacteria | 1043 | Open in IMG/M |
| Ga0370508_0072194 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium | 1017 | Open in IMG/M |
| Ga0370508_0081923 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 961 | Open in IMG/M |
| Ga0370508_0082242 | All Organisms → cellular organisms → Bacteria | 960 | Open in IMG/M |
| Ga0370508_0103598 | All Organisms → cellular organisms → Bacteria | 866 | Open in IMG/M |
| Ga0370508_0107749 | All Organisms → cellular organisms → Bacteria | 851 | Open in IMG/M |
| Ga0370508_0125219 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium | 796 | Open in IMG/M |
| Ga0370508_0129180 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium pictum | 785 | Open in IMG/M |
| Ga0370508_0142030 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium | 752 | Open in IMG/M |
| Ga0370508_0146022 | Not Available | 743 | Open in IMG/M |
| Ga0370508_0195949 | Not Available | 650 | Open in IMG/M |
| Ga0370508_0198685 | Not Available | 646 | Open in IMG/M |
| Ga0370508_0199011 | Not Available | 645 | Open in IMG/M |
| Ga0370508_0222489 | Not Available | 612 | Open in IMG/M |
| Ga0370508_0243024 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 588 | Open in IMG/M |
| Ga0370508_0251137 | Not Available | 579 | Open in IMG/M |
| Ga0370508_0260289 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 569 | Open in IMG/M |
| Ga0370508_0262203 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | 567 | Open in IMG/M |
| Ga0370508_0262354 | Not Available | 567 | Open in IMG/M |
| Ga0370508_0274818 | Not Available | 555 | Open in IMG/M |
| Ga0370508_0276433 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 553 | Open in IMG/M |
| Ga0370508_0317514 | Not Available | 518 | Open in IMG/M |
| Ga0370508_0319682 | All Organisms → cellular organisms → Bacteria | 517 | Open in IMG/M |
| Ga0370508_0333732 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0370508_0009181 | Ga0370508_0009181_1938_2126 | F012202 | VEQAYFINRLKEITIPELLDAIAEANAGQATDIYALLPPDLIDKATDALWEFIAAVKQIENS |
| Ga0370508_0009799 | Ga0370508_0009799_1332_1610 | F034611 | MQHSKTILSLTTDLLAHGGFNHLKDSEITALHHLILRLQEPLSIVQQNLLLTFWNNADAANLPAALLYRCNTVLQQLGRLPIVELYVEAELQ |
| Ga0370508_0012688 | Ga0370508_0012688_2_772 | F047703 | LQQLVDGVEFGDAWTVAGRRVQPQRTALINRLPLADRLEPGGATVADTVARQAIWSRLRDELGRYAYVSSLPTATSIMGCHGSLLDQWQDLPRLVAGLRVPAHSAPSLPCALHGTVYSVNRWTPYSLGRPREETLDQTPVPGQPAALSNDQRLDYVRPAGQLVHLAQVGDTMFFPNPPPTMTTLQEQAMIDVARALARLSTIRILEHAFFVGDGAPVLYSSFPVPVISGGHALYPQLVEQGLSRDIRLRGGRRHRA |
| Ga0370508_0021236 | Ga0370508_0021236_28_282 | F071395 | MYQFIPVEQKREVTVTAKEGLLTNKDEAKGRLINFSVKMISKDNYQVQLPEQLEAGEYGFVWVKNMELKEFTVFAFGIDWKSSD |
| Ga0370508_0027607 | Ga0370508_0027607_1034_1312 | F034611 | MLQSKTVLSLTIDLLANNAFNHLKDEEISALHHLILKLQEPLTTIQQNLLLTFWNHAYTGDLSAALLHRCNTVLQQLGRCPLEEVMMEMEMY |
| Ga0370508_0027886 | Ga0370508_0027886_3_290 | F036766 | MNRSLAQWLAGNPVGAVLITGLLGMLPVVGLGIAAFVPGAVPALLVLVRGERQGAIVALGASLILAAAILMFGRPPWMGFVYSAWVLGPALLLAVL |
| Ga0370508_0041361 | Ga0370508_0041361_700_1026 | F000982 | MATLRRTTSRARRLLDHHRIRGRSYPTLRYWERLHQMLSEEAEKRGKTPPPPPLIHGDLEADPTEKDRMERLDQQVAWADHNQLLHRVQMFFDAMPSSGWEDQVKKRR |
| Ga0370508_0042993 | Ga0370508_0042993_996_1229 | F085731 | MNEQLLPLAVWVQVACGDLRSRATQAWAARNEEDGVDEAVTKMIWLAVGIVVAIAATVFFTAKFNQAKDNVPDPVAP |
| Ga0370508_0044962 | Ga0370508_0044962_645_1241 | F036309 | AKYDTIIVKHQTKIAKKPVARPPEKPAVIAEVVLPTPEYINQPYYFDKEGNKLIRLENANALMVTKKKTLGLKGAKQSLTMDAPSSKIRFVAKKEIVFFIKTSGDVIDLTSYIKLYQFIPVEQKREVTVNAKEGLLSDKDEAKGKLMSFSVKMLSKDNYQVQLPEQLEAGEYGFVWVKNMELKEFTVFAFGIDWRNSD |
| Ga0370508_0058173 | Ga0370508_0058173_653_955 | F028627 | MNDKEEGLVLHLKEVVMLLNKIERTNASERSKTIGQLQNKIWDEPELQNEALYFLQDLAGDLNFYEPIEKDRDTTLGYYDGAKLLELTAAAIKKIEPLTR |
| Ga0370508_0068053 | Ga0370508_0068053_1_123 | F040197 | MDPAVATLDFAKAGAIIANMIESYLAAGAPPFDAEGADHAE |
| Ga0370508_0072194 | Ga0370508_0072194_705_1016 | F017058 | MATSAAPVSKNAVYPTNELATLLAPAEKEAPGTKLRRLLHEARDKGSFIHSAGAYDGYTAAIMTRLGFKALYGSGWQLAAVKNMYPDIGVYHSHQMVELVQEIW |
| Ga0370508_0081923 | Ga0370508_0081923_298_513 | F019310 | MSTLLEIETAAEARPPEQKEELFLFLAVRLRSATTQKARLVQEGNDLVLEAPTGAPPMTTRTVKKLLEDWP |
| Ga0370508_0082242 | Ga0370508_0082242_416_934 | F006349 | VLKADVHGFGSLMRAGADGPVRQALAEAVARWAPPASIAEARDGDAVLIVDDDPVALAQTARHLMDEVYQAPGQPRLRIALHYGEVQTQVRDIDLAEVVAGGSAILCAARVEPLVEPGQIWATDDFRQQFLQRPSLWRTTPVPAPHEDGRFNARKPGSQEPDLWVRLFRLES |
| Ga0370508_0103598 | Ga0370508_0103598_453_866 | F016989 | MLTRDKLTTVQWQAVRNTPHHVIIAVSASGGSAFDEMLERSAGLQGIVDAINSTHPLLSDIAGSTHIMSAQDDVRKWFYTLDEGHRTPANLQEKALETARHALEALGTHGTAEDLVHYGEFVLSLAMRVARAAREGDL |
| Ga0370508_0107749 | Ga0370508_0107749_705_851 | F066900 | MIKYQTLPEMLDDRARGDGAIVYLEGEGAEKTLKLADLRRRALGILFHL |
| Ga0370508_0125219 | Ga0370508_0125219_384_794 | F008086 | AVTETGAGDAALIADDDPVALAQTARHLMDEVYQAPGQPRLRIALHHGDVHLRQRDTDLRTVIVGGDAILCASRVEPFVEPGQIWATEEFREQFQQRPSLWRTTPLAAPGGEDRFNAKKPGSQEPDLWVRLYRLES |
| Ga0370508_0129180 | Ga0370508_0129180_46_360 | F046195 | MKVSRRWIEWAHGPGAEDGQPLAMSLCDLASAPGVGSIEVAAPALIAELVDVAGLYVHPCRGDALHDMGPWWMGQPRRIISEGRASLRSADSAASSPAVDGQPE |
| Ga0370508_0142030 | Ga0370508_0142030_145_744 | F091474 | VPALYTHVTTQPSTRTLEWANLTVLNNPSDHGANVAAYAQAQKTGRGQTWAGVMELQDATGRGGFHALEIDAYTTGPSPTPGSMDGDRIGLGIILGRAFNTGPKATVDYGVFIAPTGLNDDEADVNFGMMVWAQCRFACYGMRAGNKIAYEESGAIATKFDPASGRWGLYNGEQPLFEVDVASGELRVNGRPVDVKYRD |
| Ga0370508_0146022 | Ga0370508_0146022_2_217 | F002467 | RPFFGIYLPSHPDNRQSSQRSLIGPEDKFTTGGMVELDTGNARYLIRFTQTLEQQSGWSWALFNAVRKLSG |
| Ga0370508_0195949 | Ga0370508_0195949_329_616 | F004409 | MKERWISTTAAILLTASMAVQAQVGVLQGTVAGVKPGTVLPVFKGETKVADIKVDDGGKFSVALATGVYSVTCPNGKTPKVAALNGAATISINCQ |
| Ga0370508_0198685 | Ga0370508_0198685_429_644 | F039839 | MRQTVLPTKTHEIDAPLRSNSFARRAARGSQSARRSGLRFGLPLTPESGGPSRHPAAPCALAVTHAFRRHEF |
| Ga0370508_0199011 | Ga0370508_0199011_2_382 | F087391 | KLTKFALLAVAAGCTLASQGVYAQAMEVVTVEAVREIVIGKSPIGAPIKELTIRSRVSYADLDLTTAAGAATLEKRVRDTAASSCKEIKVDVPVEGWTVDRCVREATEDAMVQVNKVIADAKAGKK |
| Ga0370508_0222489 | Ga0370508_0222489_1_162 | F036770 | VNKFGATTDGWDAYNDWLERVRQPSPPSRQAVISKSLYSIASYKNWADKARGAF |
| Ga0370508_0243024 | Ga0370508_0243024_3_587 | F008056 | QEYVYVLLIHQLNTGNMSPPQLDWAMSQLRAWGRRLELDAVPRSPEGFFVDVAGKTGLGRRTGNDSGSMLRYLDTTPLADSLERAIGALRQAEATDQGPAAPINQLRIGILEKVSPSIAPNLNAELRRDPRIACAVAAKVRIGLSRVCHELMQQDAGAQPESPAEHIEVYAVADGARVRRRVPDEHDSLAASLSS |
| Ga0370508_0251137 | Ga0370508_0251137_473_577 | F102913 | MTPARDLTDPQQNQAVLDLATDLAGGHVSATEAER |
| Ga0370508_0260289 | Ga0370508_0260289_1_567 | F057348 | ARGTDDKVTTIEHEYLIALLVQLMNAGNMTARHLEWVAGELDEWCAPLRLALEPSSVTSFYVDLGARDGLRRRTPAPLEGRVLFLDTRPLHSILMQNVVMLEQKIRGHPLSDRTPKRTEQLGLLTKLASQVDPEFKPFARRGERTAAAGTVDAIVGFAKISGFLREEEQTPLVQIETGKSFGGTMELAV |
| Ga0370508_0262203 | Ga0370508_0262203_97_237 | F065834 | MKNINKIAIALLLIVFLSACNKNYYSGSGKSSKGCGCPGQKGGSGW |
| Ga0370508_0262354 | Ga0370508_0262354_62_343 | F097967 | MPDRSFPVVDALIRRVQRVAANRPDPMHILAQTISLTGEIGADPYAVLGVLVEGAVLTVARHIPAEQQTDMASMLVQLLEERLKAHGIPRNNP |
| Ga0370508_0274818 | Ga0370508_0274818_73_555 | F094959 | KSLTERIGAKFWSAPEKRLVRATIYKKGKGASDSHSAAGRSDEKCGLRYASKTEAGTLAVPDWLPRGSMVKIHTEEGVLSYIAADEGSGVDNRTAAKESGKTEEQKAASVLDFCAAKQLWPDFVIVEIYYYAGKVPFSDLTLAEQKTLFAYAMEYVTKQE |
| Ga0370508_0276433 | Ga0370508_0276433_2_553 | F010860 | SAYLREEDFIPVQVETGKSFGGTMELAVFGRTRNEGDRKLELARRRFAAFAAPGGPWEVKDVSQTGYRMLAPMSVANMVTLGTLAAIRPMGQALWTLGIVRRMKRLTADRAEIGLQVIANTLIGVDLIEQRKSVDTDYSVDGEQTTVNGRTFQGLFLALRKRAADSAVQSLIVPASEYQPAKRL |
| Ga0370508_0317514 | Ga0370508_0317514_390_518 | F006851 | MARAAKLDLRTFQQELASRLATKTAAQVESSRLGLSSGSDRWL |
| Ga0370508_0319682 | Ga0370508_0319682_109_321 | F012109 | MKKPITKFAAIVQTPVFPKTPHQFRPVPKPTVSAKPPKRENTFSKSRDVREERGTREMKTSHNDQTNHAR |
| Ga0370508_0333732 | Ga0370508_0333732_2_127 | F093898 | MMRFLISRAVNPPISLFDGLKTWNRIAHALREPPRKRTYQAD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |