NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034192

3300034192: Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3



Overview

Basic Information
IMG/M Taxon OID3300034192 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0142001 | Gp0401910 | Ga0373896
Sample NameUranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size244885524
Sequencing Scaffolds38
Novel Protein Genes43
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria2
Not Available16
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameUranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States
TypeEngineered
TaxonomyEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Oak Ridge, Tennessee
CoordinatesLat. (o)36.0103Long. (o)-84.2696Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001196Metagenome / Metatranscriptome749Y
F005490Metagenome / Metatranscriptome399Y
F005680Metagenome / Metatranscriptome393Y
F009540Metagenome / Metatranscriptome316Y
F009737Metagenome / Metatranscriptome313Y
F010849Metagenome / Metatranscriptome298Y
F015115Metagenome / Metatranscriptome257Y
F020377Metagenome224Y
F020927Metagenome / Metatranscriptome221N
F021332Metagenome219Y
F022445Metagenome214Y
F023288Metagenome210Y
F023298Metagenome / Metatranscriptome210Y
F023895Metagenome / Metatranscriptome208Y
F030145Metagenome186Y
F030577Metagenome / Metatranscriptome185Y
F034114Metagenome / Metatranscriptome175Y
F035819Metagenome171Y
F038572Metagenome / Metatranscriptome165Y
F040161Metagenome162Y
F041174Metagenome / Metatranscriptome160Y
F048418Metagenome / Metatranscriptome148Y
F049978Metagenome / Metatranscriptome146N
F052355Metagenome142Y
F055503Metagenome / Metatranscriptome138Y
F056100Metagenome138Y
F056437Metagenome / Metatranscriptome137Y
F058645Metagenome / Metatranscriptome134Y
F059094Metagenome134Y
F062880Metagenome / Metatranscriptome130Y
F063679Metagenome / Metatranscriptome129Y
F069797Metagenome123Y
F070506Metagenome123Y
F070983Metagenome / Metatranscriptome122N
F072489Metagenome121Y
F072490Metagenome121Y
F073720Metagenome / Metatranscriptome120Y
F075045Metagenome / Metatranscriptome119Y
F083636Metagenome / Metatranscriptome112N
F085867Metagenome111Y
F087167Metagenome / Metatranscriptome110N
F088860Metagenome / Metatranscriptome109Y
F094284Metagenome106N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373896_001586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1296Open in IMG/M
Ga0373896_003294All Organisms → cellular organisms → Bacteria1078Open in IMG/M
Ga0373896_003539Not Available1058Open in IMG/M
Ga0373896_004342Not Available1002Open in IMG/M
Ga0373896_004509All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium992Open in IMG/M
Ga0373896_005127All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter958Open in IMG/M
Ga0373896_006178Not Available912Open in IMG/M
Ga0373896_007461All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium865Open in IMG/M
Ga0373896_009348All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium811Open in IMG/M
Ga0373896_009368All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium811Open in IMG/M
Ga0373896_010857All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium777Open in IMG/M
Ga0373896_011345All Organisms → cellular organisms → Bacteria768Open in IMG/M
Ga0373896_012665All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium744Open in IMG/M
Ga0373896_013438All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium731Open in IMG/M
Ga0373896_013585All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium729Open in IMG/M
Ga0373896_015370All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium703Open in IMG/M
Ga0373896_016657All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium687Open in IMG/M
Ga0373896_018173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria670Open in IMG/M
Ga0373896_018898All Organisms → cellular organisms → Eukaryota → Opisthokonta662Open in IMG/M
Ga0373896_020895Not Available643Open in IMG/M
Ga0373896_021399All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria639Open in IMG/M
Ga0373896_023256All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium624Open in IMG/M
Ga0373896_023401Not Available622Open in IMG/M
Ga0373896_023748Not Available620Open in IMG/M
Ga0373896_026193Not Available602Open in IMG/M
Ga0373896_026912Not Available598Open in IMG/M
Ga0373896_027741Not Available593Open in IMG/M
Ga0373896_029257All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium584Open in IMG/M
Ga0373896_029975All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium580Open in IMG/M
Ga0373896_030945All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria575Open in IMG/M
Ga0373896_033780Not Available560Open in IMG/M
Ga0373896_035408Not Available552Open in IMG/M
Ga0373896_036526Not Available547Open in IMG/M
Ga0373896_040753Not Available530Open in IMG/M
Ga0373896_042140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium525Open in IMG/M
Ga0373896_044916Not Available515Open in IMG/M
Ga0373896_049013Not Available502Open in IMG/M
Ga0373896_049308Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373896_001586Ga0373896_001586_643_1002F052355MAPPDGAAVSDDAMGLTQRELLMEMREDIKVLKTTVDAIAKDQALGVERRASMQRSADSIYARLDGHDRDLDRMQAWQNRADGAMVLARWALGASLVSLVAVGLQVVAVLARAINPSLP
Ga0373896_003294Ga0373896_003294_3_119F088860MGPPLRSFAADAHDCIMVRVLGPTGYKVVARLNRARKRA
Ga0373896_003539Ga0373896_003539_705_938F041174MESGRLDFFQGRSRSRVTVVVTADGRRVNVPLRDLEPQGVSPLDLLRSLLAGLESLLGLLITGSRRENGGTRRDGRH
Ga0373896_004342Ga0373896_004342_1_441F021332RAKSRTPTLRVQVQHDIDKALERAGIPSAIDSDGWRWMQDPSGKGLIGVVAVTGQREDLSLRVVAPITPLPKAQAAHNRALRRIAEMNYDIPGHARLAIDSRTIWAVVAHNVGDIGPDDVPNCIFDCVWLSQAAAEWLKGPKPKKK
Ga0373896_004509Ga0373896_004509_1_366F030145VFFVEARYHHSPKRAADQVRYIAHREEGLRDGQRRDLYGIGPRYRAFRGDERAIRRALVEDARGLRNPVYFRFILTVDTRTASRFARLDGRLAERVLRDSVDKTFHGAARGAQGVFAVHQHG
Ga0373896_004509Ga0373896_004509_367_873F035819MTSRNHARPAAKPERKPALAPRPPEGGNGSQERRLCLIGLKVDAGLRREIDAYAEAHGVSRSRAAGHFLAIARDALHEREGVPGSRADELLEAVDGLRAAVDILGPPTFGMLRLLAHWASQGGGVKVNEDELLAELRSVGADEWEQAVAETERDLQETPGGKAQKERH
Ga0373896_005127Ga0373896_005127_799_957F059094METIAEALRLLKRQAEIQNDLRRSRDNPLLAERELFLIRNRLAQFPAAVQVIT
Ga0373896_006178Ga0373896_006178_397_654F070983MEVKAHAEQMSDGMGLINATGTKAPDIEFLERHHIGLASGDHLGDPPWVCSSVCADASVDVVGHDAQRSWSCTLVPVVERIHRLL
Ga0373896_007461Ga0373896_007461_561_863F062880LNIDRLLRDVEGRLAAMGGAAAADEALRRDVVDALREAIARERRRLDPDTTVERERERRQAAEELRGALEAVHGCVRSEEALDEVLKQLGRVVHEDFALVA
Ga0373896_009348Ga0373896_009348_296_478F023298MKNLVRSFIHDESGEDLIEYGLLAAFVAAVALVTIILDPIGIKGSLVGAFEKAKNALDAQ
Ga0373896_009368Ga0373896_009368_434_712F072490MRNPIMIITGSLLLACLPAPVNADVVTGKVVPATARAIVIDATGKTVAELKPGTYQLQLAPGRYKAVCQAPTQKEQSFLSLSEPVTVNIDCS
Ga0373896_010857Ga0373896_010857_174_620F020377MSLSRWWREWQFERSYKQSIRADLARIGKEYEARFKLLATGNDFDAAMAAYLRACRLPDLRIETLRSRRIRRAADACGVELPREWWEHDDEHDLWFLTPDGRRQARRRISQERMWAVKQWLQILTPAAALIVGLAGVVIGLLSMWRWP
Ga0373896_011345Ga0373896_011345_246_629F049978LDRFQGPFFRRGEGRVDEGFTQIDLAAVPEVLGEALQQPIEAARALPELEATMASLVRRIARWQVVPRRARAQDPQDAVHDGSRIGPRPAAPIRATARAEGRFEHGPLDVGEVHAVEYDGDPTDVSR
Ga0373896_012665Ga0373896_012665_50_304F087167MRFRELAAAALAAMVVAWATVPALAESSGYTIGPAGPADPRNNYVPQAGAVFVVDNAKGQISMCFPDNKDNKVVVICTPATKLP
Ga0373896_013438Ga0373896_013438_1_240F056100MRRTSVISRLKTLVLATLACVLLALVAPLFIATRAVDEPFSGYSVLASPRDLHVMTKPARLSAAPDLTLSRGVLYADGNA
Ga0373896_013585Ga0373896_013585_3_233F072489MFGLQPLTPVIVKVASDPTPQVTVVDVLVDALGLTGVIAAGSFVLGGVVGLLLIGYSRWKIARAGEAGTSEHTSLDL
Ga0373896_015099Ga0373896_015099_305_706F040161GPARAGLQWVNGAPRAGKQALLVVPLGDRESGEVRLTFQGPGPRLAIAEAFLYGPGEEARPAEGREAARGAYESARAGRWHEAVRLYAQAVRLEPDRASHHAAWARARWRAAQRRWLDVESLDDGGPELVEVR
Ga0373896_015370Ga0373896_015370_1_480F058645VFDDLLHQGLRAGLNVAKPGGFGATAGVGMSLKEKDPRHPELDVANAYSGNAGVRHTNVFGSGFSAGIDGSGFSNGYTDGGLLMARVGRRFDGGHLLDLSFGDSFYRVKLTQENRSTQWLRLLGRAELGHRVYCQGDFEYDNGDDLKGPRGSLELGILF
Ga0373896_016657Ga0373896_016657_15_260F005680MILHMRGLADIYLDVRGGDIIVDLPGTSYTVTYHKPAVCPQLLAAYTPAKDDPRAELTQAEFLAKAWRLANDKARELGWIV
Ga0373896_017323Ga0373896_017323_13_288F030577MAPPERFEEAARRYPSEAAPWLVLTGAFYERFLDHPDQRPERARFFRDVLEGRAGFEVAARFRQEGWLRPEAEFLDPTIVVLRRREDDASR
Ga0373896_018173Ga0373896_018173_1_225F048418MPIHLSPKARAKAAPARRQAATVSIDWLGLWALSVGFCGIILAGIAYFMTGDNIGASGILLGAAAVIAVVVRFGA
Ga0373896_018898Ga0373896_018898_399_644F085867VPPNDVASPERPLSAREVAPRRGAPKFGAGADGWDAYNNWLDRVRQPAQPSRQAVISKSLYSVSSYKNWADKARGAFDKAK
Ga0373896_020895Ga0373896_020895_438_560F038572MAVLIQTVGVEEAAETVLSEVTVIVPVAFTVPQPSVNGIE
Ga0373896_021399Ga0373896_021399_298_639F020927MWAAFVRQFAAYAITRRGKKLFALIGVLALCFGAALLIDMQFYVSASFAALLSGFAAVTYVVQHVKLKRAEHQRLLRKAEVAHQRALAAQARLERIDTAKSALRGAVTGAGRLV
Ga0373896_023256Ga0373896_023256_436_624F015115MRAKLAGVCLFAAVLALATWAPAQEATPTTITDIRQESTDRSTRLIVECTGPLAYTYYSPDPL
Ga0373896_023401Ga0373896_023401_123_620F023288MKGHSADRRWGFWLADHGLAMGGLALLAVGAATSWWAMSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRPSGLEPPLSFSVRRGERVLFFFCEEDPERGGWSDVYTVLDQPRGTDGFEPCSALPPAATPSGWSLRGRVPVDDLRFEHHERSTYVTRGSLERSLS
Ga0373896_023748Ga0373896_023748_2_583F075045MTGDHFDTTLGGHMYDGVHFPDGTNHGTASMMVDHHSATATSGRYTGSGDAGTFNMSLSPMWDRSASIGTVAGVYTRSTSNGYTMTMTLSVNGQLTASDSRGCLINGSVGVPDATHNMYNLNATVTSCGSLDGTYSGMGALLDADAMQDWMTAMHPLEHGGHSHGGSTMGGSPMMGRNTVPTGERNLFMFSLVN
Ga0373896_026193Ga0373896_026193_2_538F001196MRRVINASLFCGLSLFMLAGNAAAGGVADQFRSGAFGVPWSAGKSAIQAKYPGGQWDQNEDGRDRYCAPSRQVLLKLPPPHQSRELCFIMGLDNTLGAASARMDPSLPSLLAIVNRSRTMFGDFDAVKRDDNAIQSKFTYMLWLKDAPIIAVVSSSNGPDGKPDMVAFSVADEASLFAK
Ga0373896_026912Ga0373896_026912_77_598F009540MACLVPAAPTAGQEEKAPTEITLDKATQVGVGIGFGGPIGAAASFRVLHGLGADVKEGDDRVKAVCALPVPHCAQGFLFQADAGSGGGKLSLGIGARARVDDEDFHGTVGASLRASLVRTWGSPIGTEPDLTYLGPELDLSILRFNLTLGVLWRVSGHTGASALFAWGVGFGL
Ga0373896_027741Ga0373896_027741_2_274F063679GSSKAKAMTVQRQAPHLNERMPLSTSLLPTLFLFSALLAFQVGLPGLLAAREGGPTVFVVLLASLCVVALAWWRCHRRDFTSPRRIRRGI
Ga0373896_028987Ga0373896_028987_1_585F073720LAFVVAFTSLLGANAQAQQAQPDRYVVVSYIKVVPGQEAAYRSYLTTTAKKVYQELMAANASLVGWSSAQTMFQGMEHGSDFDFVGAAVYAGTPPEPGTNVDAAIMKATGMSQADLGKKLATMRTVVGTEVVRYRAGTMAPGTTKEGDIRVVGRVKIKPGMGDEYLEMARSISEPMMQARVAGGELKSWSLWSRV
Ga0373896_029257Ga0373896_029257_1_357F010849RPGDDRLISGKLRGKEARRGAPATLVSVDGTSYAWEYRHGWLVWGKGLKALSISVSLEPGRTRELILDLALRVSPEDGAPPETRVVRALEDGIRSAREAGWDPESRGRAFRHEVADPV
Ga0373896_029975Ga0373896_029975_2_472F009737MRTLSVVLIALVASGSLAAQRRARIGPVVSSIAIEDASGSHSYPSFGAALALLSGDDGEVGLAVSRYDDLSSNNCVRQMTFAGVESNYYPVGPQGIAPFASTAVGLARVTDQDVGLLGVCTAASATNEVGLGFGLGVRLNVGAQAAAIVEGRFFQVP
Ga0373896_030945Ga0373896_030945_132_365F022445MENGEYYTDAETNEDFNFPRLILGYILHGKRVEIYKSKETYIVVNTQTEKYLTCIGYEHAHYVFKECVRVLAPEGRA
Ga0373896_031716Ga0373896_031716_1_381F069797ETAAPEDFVEAPAPPSWDDIVETCLGLAQAHGAMLIDPAGQVFASRGDWPAPGPDAIAGKLVTTMERTLKDAPTRSISAPLMGSHLTAWRVALPEGLVTAAFIGASPVRAEARPIIDAEIHRGAGA
Ga0373896_033780Ga0373896_033780_16_348F034114MPVIMRETSVAAGAVNDNLLSGSAFEFARVNSLVSIGINQSATGGFATINSGADVVCEEFSPPIATVYPVIPDGMYFSDVAAAGDRLVIRYRNPTGGALTVRVVCQVTPL
Ga0373896_035408Ga0373896_035408_196_552F083636VSALIAAIAGCASAPGPTSISAEDVAGLAGTWQGWLVTGSGFTLLTFVVRGDGSFAISGTLVRATGRLVVTEGKLRFDGTGPWRGTLVPEGGGERRALRIERDDRLYRGTLHPIPPAS
Ga0373896_036526Ga0373896_036526_172_438F005490MDQLMSDARRLASIGTFFIIVGWVFVVYALVAGAIWWIDLAGREAFNLFEALAISASAVGLPVFAAFVVAGFGYTIRLFALYVATKSQ
Ga0373896_040753Ga0373896_040753_267_473F055503MLSKTAIALVAASFALGVAALTPAMANYAPCVENPAAKGCPGEISRNTNANSYRGAEHHTPHMTRHHG
Ga0373896_042140Ga0373896_042140_1_492F094284MLSEPNQRLKVFESADVRVIVESVTGTQNFRRNSDFDEVLIQFCGTSHVESEFGKFDLGMGEVLVVPGGVSYRSTGANDCLRMVLDLHEPVFKVFDEKEHTSETSYTMKRTNGPNWSAPPAPPSNAKVIEKLYIWDEDPDDATIIERDYADLVGVSSIKSKENI
Ga0373896_044916Ga0373896_044916_18_182F070506MDAKKDSRPPLPKIERLVDDAKAELKRAGVETDGKRSDEILNMAREERNKPRVT
Ga0373896_049013Ga0373896_049013_3_500F056437APRAYGGGLARGEWVAALGGVADSVPPGGGTDAGLSRLVTGDTAGVSLLTGFFTGAWQSAGGLLPEGRSQFALLDLGQTALVVGGMYAGASSNGAETLAATVTDGSVGPFTGPVGTNRIADLTCLSAPAGTLIGPAGVSWWETDGTARGLVIGGLDLATLTRRSCA
Ga0373896_049308Ga0373896_049308_154_408F023895MSDPKNPAASGGVPRPDGLSDTAMRRLKFGAAAEGWEAYGNWLDRVRQQPGRTSRQAVIAKALYSVSSYKNWADKARGAFDDSK

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