Metagenome / Metatranscriptome Family F088860

Basic Information
Family ID	F088860
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	40 residues
Representative Sequence	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL
Number of Associated Samples	100
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.46 %
% of genes near scaffold ends (potentially truncated)	82.57 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.092 % of family members)
Environment Ontology (ENVO)	Unclassified (18.349 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.128 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.70% β-sheet: 20.29% Coil/Unstructured: 71.01%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02371	Transposase_20	57.80
PF01548	DEDD_Tnp_IS110	0.92
PF05711	TylF	0.92
PF04392	ABC_sub_bind	0.92
PF00665	rve	0.92
PF06078	DUF937	0.92
PF13751	DDE_Tnp_1_6	0.92
PF13683	rve_3	0.92
PF13495	Phage_int_SAM_4	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	58.72
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.92
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.92
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.92
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.55 %
Unclassified	root	N/A	4.59 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	59.63 %
Unclassified	root	N/A	4.59 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	56.88 %
Unclassified	root	N/A	4.59 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	47.71 %
Unclassified	root	N/A	4.59 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	46.79 %
Unclassified	root	N/A	4.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.59 %
Mesorhizobium delmotii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	4.59 %
Bradyrhizobium sp. 141	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 141	0.92 %
Mesorhizobium delmotii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02IVQL4	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
2189573002\|GZIGXIF01EUAZM	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
2209111022\|2221201135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	833	Open in IMG/M
3300000680\|JGI12452J11691_100005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2859	Open in IMG/M
3300000697\|JGI12493J11910_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2543	Open in IMG/M
3300001160\|JGI12654J13325_1002466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1122	Open in IMG/M
3300001661\|JGI12053J15887_10184503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	1071	Open in IMG/M
3300001661\|JGI12053J15887_10254882	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300002910\|JGI25615J43890_1052214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	676	Open in IMG/M
3300003505\|JGIcombinedJ51221_10116220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1071	Open in IMG/M
3300004633\|Ga0066395_10337073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	834	Open in IMG/M
3300005166\|Ga0066674_10272957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	798	Open in IMG/M
3300005172\|Ga0066683_10127457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1555	Open in IMG/M
3300005330\|Ga0070690_101358885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	571	Open in IMG/M
3300005334\|Ga0068869_101708453	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300005434\|Ga0070709_10019458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3925	Open in IMG/M
3300005435\|Ga0070714_101217456	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300005436\|Ga0070713_100058051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3225	Open in IMG/M
3300005444\|Ga0070694_100095299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2095	Open in IMG/M
3300005447\|Ga0066689_10909813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	544	Open in IMG/M
3300005556\|Ga0066707_10355564	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005556\|Ga0066707_10920071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	536	Open in IMG/M
3300005559\|Ga0066700_10152549	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300005618\|Ga0068864_100452805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1228	Open in IMG/M
3300005764\|Ga0066903_102112211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1084	Open in IMG/M
3300005764\|Ga0066903_106513426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	608	Open in IMG/M
3300005841\|Ga0068863_102068124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300005937\|Ga0081455_10052173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3503	Open in IMG/M
3300005993\|Ga0080027_10069786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1290	Open in IMG/M
3300005993\|Ga0080027_10134248	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300005993\|Ga0080027_10447670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300005994\|Ga0066789_10071296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1506	Open in IMG/M
3300005995\|Ga0066790_10180919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	902	Open in IMG/M
3300006057\|Ga0075026_100192628	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300006576\|Ga0074047_12068910	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300006642\|Ga0075521_10444307	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300006796\|Ga0066665_10473803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1030	Open in IMG/M
3300006949\|Ga0075528_10200124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	542	Open in IMG/M
3300009012\|Ga0066710_101483797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1047	Open in IMG/M
3300009089\|Ga0099828_11200685	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300009148\|Ga0105243_11143043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	789	Open in IMG/M
3300009820\|Ga0105085_1102237	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300010159\|Ga0099796_10218401	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300010379\|Ga0136449_103448376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300011269\|Ga0137392_10783775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 141	788	Open in IMG/M
3300011404\|Ga0153951_1030733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	922	Open in IMG/M
3300011442\|Ga0137437_1318755	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300012010\|Ga0120118_1095121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	725	Open in IMG/M
3300012202\|Ga0137363_10334229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1250	Open in IMG/M
3300012351\|Ga0137386_11269622	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300012363\|Ga0137390_10828404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	882	Open in IMG/M
3300012924\|Ga0137413_11755704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300012930\|Ga0137407_11097219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	754	Open in IMG/M
3300012988\|Ga0164306_11577920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	565	Open in IMG/M
3300014489\|Ga0182018_10590348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	583	Open in IMG/M
3300014658\|Ga0181519_10422006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	823	Open in IMG/M
3300015373\|Ga0132257_101365942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	901	Open in IMG/M
3300015374\|Ga0132255_103578350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300016341\|Ga0182035_11587907	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300016404\|Ga0182037_11281283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	646	Open in IMG/M
3300016422\|Ga0182039_10199518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1595	Open in IMG/M
3300016750\|Ga0181505_10573462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300018042\|Ga0187871_10068257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2095	Open in IMG/M
3300018076\|Ga0184609_10484945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	565	Open in IMG/M
3300019888\|Ga0193751_1022263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3100	Open in IMG/M
3300019999\|Ga0193718_1049625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	914	Open in IMG/M
3300021078\|Ga0210381_10308712	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300021405\|Ga0210387_10725173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	880	Open in IMG/M
3300021560\|Ga0126371_10265341	All Organisms → cellular organisms → Bacteria → Proteobacteria	1835	Open in IMG/M
3300022557\|Ga0212123_10019742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7805	Open in IMG/M
3300025920\|Ga0207649_11116642	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300026307\|Ga0209469_1082567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	954	Open in IMG/M
3300026343\|Ga0209159_1289032	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300026358\|Ga0257166_1064182	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300026860\|Ga0207823_106059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	917	Open in IMG/M
3300026890\|Ga0207781_1021745	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300027099\|Ga0208726_100262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1468	Open in IMG/M
3300027099\|Ga0208726_101917	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300027523\|Ga0208890_1018529	All Organisms → cellular organisms → Bacteria → Nitrospirae	986	Open in IMG/M
3300027562\|Ga0209735_1014599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1558	Open in IMG/M
3300027703\|Ga0207862_1161846	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300027952\|Ga0209889_1016280	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300028536\|Ga0137415_10487114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1040	Open in IMG/M
3300029910\|Ga0311369_10437316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1126	Open in IMG/M
3300031057\|Ga0170834_107380961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	818	Open in IMG/M
3300031547\|Ga0310887_10703026	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031573\|Ga0310915_10229095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1305	Open in IMG/M
3300031679\|Ga0318561_10104682	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300031744\|Ga0306918_10578363	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031744\|Ga0306918_10713671	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300031764\|Ga0318535_10226727	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300031796\|Ga0318576_10509655	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300031837\|Ga0302315_10509834	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031894\|Ga0318522_10160908	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031902\|Ga0302322_102483318	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031910\|Ga0306923_10099804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3275	Open in IMG/M
3300031910\|Ga0306923_10439683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1480	Open in IMG/M
3300031945\|Ga0310913_10425517	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300031981\|Ga0318531_10433058	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300032044\|Ga0318558_10124698	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300032054\|Ga0318570_10099022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1270	Open in IMG/M
3300032076\|Ga0306924_10922399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	964	Open in IMG/M
3300033475\|Ga0310811_10356173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1637	Open in IMG/M
3300034192\|Ga0373896_003294	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	8.26%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Aquatic	Environmental → Aquatic	7.34%
Plants	Host-Associated → Plants	7.34%
Fungi	Host-Associated → Fungi	0.92%
Bioremediation	Engineered → Bioremediation	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.50%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Sediment	Environmental → Aquatic → Sediment	2.75%
Peat	Environmental → Terrestrial → Peat	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%
Metal	Engineered → Bioremediation → Metal	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.13%
Loam	Environmental → Terrestrial → Soil → Loam	19.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Sand	Environmental → Terrestrial → Soil → Sand	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
2189573002	Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32	Environmental	Open in IMG/M
3300000697	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71	Environmental	Open in IMG/M
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011404	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG	Host-Associated	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300027099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF026 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034192	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_08256170	2189573000	Grass Soil	SFAADAHGCIMVRVLGPTEYKVVARLIRARKRARL
FE1_03998200	2189573002	Grass Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL
2222028443	2209111022	Grass Soil	MGPPLRSFAADAHDCIMVRVLGPTEYKVVARLNRARKRAPPLIVIPIAPS
JGI12452J11691_1000051	3300000680	Tropical Forest Soil	MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARAGSPLIVI
JGI12493J11910_1000254	3300000697	Tropical Forest Soil	MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAP
JGI12654J13325_10024661	3300001160	Forest Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKAVARLIRARKRAPL*
JGI12053J15887_101845033	3300001661	Forest Soil	MGPPPRSFAADAHDCIMVRVLGPTEYKAVARLIRARKR
JGI12053J15887_102548821	3300001661	Forest Soil	MAVMPRGRMGPPXRSFAADAHDCIMVXVLGPTEYKVVARLIRARKRAPL*
JGI25615J43890_10522141	3300002910	Grasslands Soil	PPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAPL*
JGIcombinedJ51221_101162201	3300003505	Forest Soil	RMGPPLRSFAADAHDCIMVRVLGPTEYKVEARLNRARKRAPL*
Ga0066395_103370731	3300004633	Tropical Forest Soil	MAVMPRGRMGPPLRSFAADAYDCIMVRVFGPTGYKVVARLIRARKRARL*
Ga0066674_102729572	3300005166	Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0066683_101274571	3300005172	Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARAGSPLIVI
Ga0066678_109875112	3300005181	Soil	MGPPPRSFAADAHDCIMVWVLGPTEYKVVARLIRAPQAGSPLIVITRPH*
Ga0070690_1013588851	3300005330	Switchgrass Rhizosphere	PNGRMGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAPL*
Ga0068869_1017084532	3300005334	Miscanthus Rhizosphere	MGPPLRSFASDAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0070709_100194588	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPKGRMGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRAR*
Ga0070714_1012174562	3300005435	Agricultural Soil	MAVMPKGRMGPPPRSFAADAHGCIMVRVLGPTEYKVVARLI
Ga0070713_1000580512	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPKGRMGPPLRSFAADAYDCIMVRVFGPTEYKVVARLIRARKRAPL*
Ga0070694_1000952992	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGPPLRSFAADAHDCIVVPVLGPTAYKVVARFNRARKRAPL*
Ga0066689_109098131	3300005447	Soil	RMGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0070741_106478212	3300005529	Surface Soil	MGPPPRSFAADAHDCIMVWVLGPTEYKVVARLIRALQAGSPLIVVSRPD*
Ga0066707_103555642	3300005556	Soil	MGPPLRSFAADAHDCIMVRVLGPTGYKVVARLNRA
Ga0066707_109200711	3300005556	Soil	VLPWVSMPKGRMGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0066700_101525492	3300005559	Soil	MGPPLRSFAADAHGCIMVRVLGPTGYKVVARLIRARKR
Ga0068864_1004528053	3300005618	Switchgrass Rhizosphere	LRSFAADAHDCIMVRVLGPTGYKVVARLNRARKRAPL*
Ga0066903_1021122113	3300005764	Tropical Forest Soil	FAADAHDCIVVPVLGPTAYKVVARFNRARKRAPL*
Ga0066903_1036060182	3300005764	Tropical Forest Soil	MGPPSRSFAADAHDCIMVWVLGPAEYKLVARLNCAPQAGSPLIVITRPY*
Ga0066903_1065134261	3300005764	Tropical Forest Soil	GPPLRSFAADAHDCIVVPVLGPTAYKVAARFNRARKRAPL*
Ga0068863_1020681241	3300005841	Switchgrass Rhizosphere	PRSFAADAHGCIMVRVLGPTEYKVVARLIRARKRARL*
Ga0081455_100521731	3300005937	Tabebuia Heterophylla Rhizosphere	MGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIRARKR
Ga0080027_100697861	3300005993	Prmafrost Soil	LRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0080027_101342482	3300005993	Prmafrost Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARAGSPLI
Ga0080027_104476701	3300005993	Prmafrost Soil	RMGPPLRSFAADAYDCIMVRVLGSTEYKVVARLSRARKRAPL*
Ga0066789_100712965	3300005994	Soil	PKGRMGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0066790_101809192	3300005995	Soil	MGPPLRSFAADAHGCIMVRVLGPTGYKVVARLIAP
Ga0075026_1001926282	3300006057	Watersheds	MGPPLRSFAADAHDCIVVRVLGPTGYKVVARLNRA
Ga0074055_117449252	3300006573	Soil	MGPPPRSFAADAQDCIMVWVFEAPEYKVAARNNRA*
Ga0074047_120689102	3300006576	Soil	VFPWLSMPKGRMGPPLRSFAADAYDCIMVRVFGPTEYKVVARLIRARKRAPL*
Ga0075521_104443071	3300006642	Arctic Peat Soil	MGPPPRSFAADAHECIMVRVLDTGYKVVARLIRARKAGSPLIVIP
Ga0066665_104738032	3300006796	Soil	SMPKGRMGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0075528_102001241	3300006949	Arctic Peat Soil	RMGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARKRAPL*
Ga0066710_1014837971	3300009012	Grasslands Soil	MGPPPRSLAADAHGCIMVRMFEDLLETSHTEYKVVARLIATAGRLA
Ga0099828_112006852	3300009089	Vadose Zone Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLSRARKQ
Ga0105243_111430432	3300009148	Miscanthus Rhizosphere	PFSRMGAAPRSFAADAHDCIMVRARPGPTEYKVVER*
Ga0105085_11022372	3300009820	Groundwater Sand	MGPSLRSFATDAHDCIMVRVLGPTEYKDVARLLRAP
Ga0099796_102184012	3300010159	Vadose Zone Soil	MGPPPRSFAADAHGCIMVRVLGPTEYKVVARLIRARKRA
Ga0134063_102070822	3300010335	Grasslands Soil	MGPPLRSFAADAHDCIMVWVLAPTEYKVVTRLIRAPQAGSPLI
Ga0136449_1034483761	3300010379	Peatlands Soil	SFAADAHDCIMVQVLGPTGYKVVARLNRARRRAPL*
Ga0137392_107837752	3300011269	Vadose Zone Soil	RMGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0153951_10307331	3300011404	Attine Ant Fungus Gardens	MPKRRMGPQLRSFAADAYDCIMVLVLGPTEYKAVARLIRARKRAPL*
Ga0137437_13187552	3300011442	Soil	MAVMPRGRMGPPLRSFAADAHGCIMVRVLEPTGYKVVARLIR
Ga0120118_10951213	3300012010	Permafrost	RSFAADAHDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0137363_103342291	3300012202	Vadose Zone Soil	MGPPLRSFAADAHGCIMVRSFDLTGYRVVARLIRARKRAPL
Ga0137386_112696222	3300012351	Vadose Zone Soil	MGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIAPA
Ga0137390_108284043	3300012363	Vadose Zone Soil	MAVMPRGRMGPPPRSFAADAHGCIMVRVLGPTEYKVVARLIRARKR
Ga0137413_117557041	3300012924	Vadose Zone Soil	LSMPKGRMGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRVRKRAPL*
Ga0137407_110972192	3300012930	Vadose Zone Soil	GPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0164306_115779202	3300012988	Soil	RSFAADAYDCIMVRVLGPTEYKVVARLSRARKRAPL*
Ga0182018_105903481	3300014489	Palsa	PRSFAADAHDCIMVRVLGPTEYKVVARLSRARKRAPL*
Ga0181519_104220061	3300014658	Bog	SFAADAHDCIMVRVLGPTEYKVVARLIRARKRAPL*
Ga0132257_1013659422	3300015373	Arabidopsis Rhizosphere	MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARK
Ga0132255_1035783502	3300015374	Arabidopsis Rhizosphere	SFAADAHDCIMVRVLGPTEYKVAARLNRARKRAPL*
Ga0182035_115879071	3300016341	Soil	MGPPPWSFAADAHDCIMVWVLGPTEYKVVARLVRALKRGL
Ga0182037_112812833	3300016404	Soil	MGLLLRSFATDAHDCIMVRVVGPTEYKVAARLIRARQRA
Ga0182039_101995181	3300016422	Soil	MAVMPKGRMGPPLRSFAVDAYDCIMVRVLGPTEYKVVARLIRA
Ga0181505_105734621	3300016750	Peatland	ASELRTDAHDCIMVRVLGPTEYKVVARLSRAQKRAPL
Ga0187871_100682573	3300018042	Peatland	MGPPPRSFAADAHDCIMVRVLGPTEYKVVARLIRATES
Ga0184609_104849451	3300018076	Groundwater Sediment	MAFYAAFENGPAARSFAADAYDCIMVRVLGPTEYKVVARLIRARKRAPL
Ga0193751_10222638	3300019888	Soil	MPNGRMGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIRARKRAPL
Ga0193718_10496252	3300019999	Soil	MPIGRMGPPLRSFAADAYDCIMVLVPGPTGYKVVARLNRVR
Ga0210381_103087121	3300021078	Groundwater Sediment	MAFMPRGRMGPPLRSFAADAHDCIMVRVLGPTGYKVVARLIRAR
Ga0210387_107251731	3300021405	Soil	PLRSFAADAHDCIMVRVLGPTEYKVEARLNRARKRAPL
Ga0126371_102653413	3300021560	Tropical Forest Soil	MGPPPRSFAADAHDCIMVWVFGPTEYKVVARLVRAL
Ga0212123_100197426	3300022557	Iron-Sulfur Acid Spring	MGPPLRSFAADAHGCIMVRVPGPAGYKVVARLIRARKRAPL
Ga0207649_111166421	3300025920	Corn Rhizosphere	MGPPLRSFAADAYDCIMVRVLGPTGYKVVARLIRA
Ga0209469_10825672	3300026307	Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARK
Ga0209159_12890322	3300026343	Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRA
Ga0257166_10641822	3300026358	Soil	MGPPLRSFAADAHGCIMVRVPGPAGYKVVARLIRAAR
Ga0207823_1060591	3300026860	Tropical Forest Soil	MGPPLRSFAADAHGCIMVRVLGPTGYKVVARLIRARKRAPPLIA
Ga0207781_10217451	3300026890	Tropical Forest Soil	MGPPLRGFAADAHDCIMVRVLGPTEYKVAARLNRARKRAP
Ga0208726_1002621	3300027099	Forest Soil	MGPPLRSFAADAHGCIMVRVPGPAGYKVVARLIRARK
Ga0208726_1019171	3300027099	Forest Soil	MAVMPRGRMGPPSRSFAADAHGCIMVRVPGPAGYKVVARLIRARK
Ga0208890_10185292	3300027523	Soil	LRSFAADAYDCIMVLVLGPTGYKVVARLNRARKRAPL
Ga0209735_10145991	3300027562	Forest Soil	MGPPLRSFAADAHDCIMVRVLGPTEYKVVARLIRAR
Ga0207862_11618462	3300027703	Tropical Forest Soil	MGPPLRSFAADAHGCIMVRVLGPTGYKVVARLIRARKRAP
Ga0209889_10162803	3300027952	Groundwater Sand	MGPSLRSFATDAHDCIMVRVLGPTEYKDVARLLRAPQAGSPQI
Ga0137415_104871142	3300028536	Vadose Zone Soil	MGPPPRSFAADAHDCIMVRVLGPTEYKAVARLIRARKRAPLELS
Ga0311369_104373162	3300029910	Palsa	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARRRAPPLIVIPIA
Ga0170834_1073809612	3300031057	Forest Soil	CFAADAYDCIMVRVFGPTEYKVVARLIRARKRAPL
Ga0310887_107030262	3300031547	Soil	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLSRARK
Ga0310915_102290951	3300031573	Soil	MGPPPRSFAADAHDCIMVRVPGPTEYKVVARWIRARTR
Ga0318561_101046821	3300031679	Soil	MAVMPKGRMGPPLRSFAVDAYDCIMVRVLGPTEYKVVARLIRARKRAPL
Ga0306918_105783632	3300031744	Soil	MGPPLRSFAADAYDCIMVRVFGPTGYKVVARLFRVRKA
Ga0306918_107136712	3300031744	Soil	MPVLRMGPPPRSFAADAYHCIMVRVFAPTEYKDVARS
Ga0318535_102267271	3300031764	Soil	MGPPPWSFAADAHDCIMVWVLGPTEYKVVARLVRALKRGLPS
Ga0318576_105096551	3300031796	Soil	MGPPPRSFAADAHDCIMVWVLEPTEYKVVARLIRAPERGLP
Ga0302315_105098341	3300031837	Palsa	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARLIRARRRAP
Ga0318522_101609081	3300031894	Soil	MGLLLRSFATDAHNCIMVWVVGPTEYKVAARLIRA
Ga0302322_1024833182	3300031902	Fen	MGPPLRSFAADAYDCIMVRVLGPTEYKVVARPIRARK
Ga0306923_100998041	3300031910	Soil	RSFAADAHDCIVVPVLGPTAYKVVARFNRARKRAPL
Ga0306923_104396832	3300031910	Soil	MGPPLRSFAADAHDCIVVPVLGPTAYKVVARFNRARKRAPL
Ga0310913_104255172	3300031945	Soil	MGPPLRSFAADAYDCIMVRVLGPTGYKVVARLIRAR
Ga0318531_104330581	3300031981	Soil	MGPPLRSFATDAHDCIMVRVVGPTEYKVAARLIRARQ
Ga0318558_101246981	3300032044	Soil	MGPLLRSFAADAHDCIMVRVSGPTAYKVVARFNRA
Ga0318570_100990222	3300032054	Soil	MGPPPRSFAADAHDCIMVWVLGPTEYKVVARLVRALKRGLP
Ga0306924_109223993	3300032076	Soil	MGPPLRSFAADAYDCIMVRVLGPTGYKVVARLMRARK
Ga0310811_103561732	3300033475	Soil	MGPPLRSFAADAYDCIMVRVLGPTGYKVVARLIRAPDKRAPLDRHPD
Ga0373896_003294_3_119	3300034192	Sediment Slurry	MGPPLRSFAADAHDCIMVRVLGPTGYKVVARLNRARKRA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088860

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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