3300030497: Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300030497
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104148 | Ga0268252
• Sample Name: Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 426598694
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	4
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004081	Metagenome / Metatranscriptome	454	Y
F035162	Metagenome	172	Y
F039456	Metagenome	163	Y
F060565	Metagenome	132	Y
F075601	Metagenome	118	Y
F076270	Metagenome	118	Y
F079524	Metagenome	115	Y
F085043	Metagenome	111	Y
F088163	Metagenome	109	Y
F102440	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0268252_1046576	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	1317
Ga0268252_1075294	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	957
Ga0268252_1119739	Not Available	695
Ga0268252_1132549	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	649
Ga0268252_1138495	Not Available	630
Ga0268252_1142536	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	618
Ga0268252_1150342	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	596
Ga0268252_1172328	Not Available	544
Ga0268252_1183271	All Organisms → cellular organisms → Bacteria	522
Ga0268252_1185325	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0268252_1046576	Ga0268252_10465762	F102440	MGRNTGRGKVAYSWISPDPAKAGPTLGVVVVVVVFSVLIF
Ga0268252_1075294	Ga0268252_10752941	F102440	MGRNTGRGKVAYSWISPDPAKAGPTVGVVVVVVVVSSSS
Ga0268252_1101683	Ga0268252_11016831	F079524	DYELWMLIKSGPLIPTKVIEDGSKVHKKPEEFNADDFKMM
Ga0268252_1119739	Ga0268252_11197391	F088163	MYDRFVYCWFVHVNIEPSLVVGWFEVELLSNLRFLWSVLCEEGDRVVNCHNRVDCEAICGLMSCDMKYMNVLCVN
Ga0268252_1132549	Ga0268252_11325491	F060565	MVIIKAYLLPEKEEILNEMSFLLERVTPSIKVLIDNLEFHTKSRSRFGLLSTAYLIAQRFSLL
Ga0268252_1138495	Ga0268252_11384951	F075601	MEYEKYSLEKLQKMFDVEQNPEELNKIMSAISDKYDVMSDDNKETNNVQLEEEIYQQMNLIKLRDLNVLPLEEIRRKLDKKYDKTIVENEINEIGEDI
Ga0268252_1142536	Ga0268252_11425361	F102440	MGRNTSRGKVAYSWISPDPAKAGPTLGVVVVVVVVLSKVIYWL
Ga0268252_1150342	Ga0268252_11503421	F039456	DKYMKIDRAVSEDIYDYLFDMGAGKFLSKKEKKYLLELFEEWDPEYFKQLDEDFDEYPDNEDLADIIGDEGIQNLNNDD
Ga0268252_1172328	Ga0268252_11723283	F035162	MRHLKNYIAEFSQYYYKIGHKTNRSMFYDKLLYPINSIIKEKYIAWLEKVDVIDTLSLRISYLRK
Ga0268252_1183271	Ga0268252_11832712	F076270	PNKSASVRPAVKCCRSMPRCRNCPARQIADERVLQALGLPVDPPLPPHLRGVPPSLHKYEPLLLRSWREREPAA
Ga0268252_1185325	Ga0268252_11853251	F085043	SFKSAXPSLDRSMSLDRKVIGYKTKTVSELIHEDELVKNMTIEICYEVTNTNPNSIYIPTNVCLEEYNKYE
Ga0268252_1187200	Ga0268252_11872001	F039456	MRCENTIFVHSNVFDDYIKVDSAESEDIFDYLFDIGAGKFLSEEGKKYLLKLFEEYDPEHLNQINEDFDEYPDNDGLENIIGDEGMQNLNNDD
Ga0268252_1192876	Ga0268252_11928762	F004081	MEETLELASFRGNDDPSLVAAALACRACLSGEVDWSLLIDDFDAEAICHCRACGYTRAVSLTSEQALRL
Ga0268252_1194022	Ga0268252_11940221	F039456	MAIEFFNIYHQCWALIEKEKTLMHCGNTTFAYSNEFNDYMKVDGTESEDIFDYLFDIGAGKFLSEEGKKYLLELFEEYDPEHLNQINEDFDEYPDNDGLENIIGDEGMQNLNNDN
Ga0268252_1194644	Ga0268252_11946442	F035162	MRHLANYIVEFSQYYNKIGHNETNLGMFYDKLPYPINSIINKKCIAWFERTDVIDTPGSRISSLKKMGQXSMSKSPKAKED