Metagenome Family F076270

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076270
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	65 residues
Representative Sequence	MKCCRSTPRCRDCPARKIADDQILRALGIPVEPPLPPHLKGVPPSLHKYEPLLRRSYEERVGATA
Number of Associated Samples	84
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	36.44 %
% of genes near scaffold ends (potentially truncated)	21.19 %
% of genes from short scaffolds (< 2000 bps)	86.44 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.441 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.271 % of family members)
Environment Ontology (ENVO)	Unclassified (33.051 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.525 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.16% β-sheet: 0.00% Coil/Unstructured: 54.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00210	Ferritin	44.92
PF00106	adh_short	33.05
PF03055	RPE65	5.08
PF13561	adh_short_C2	4.24
PF13302	Acetyltransf_3	1.69
PF13487	HD_5	0.85
PF01134	GIDA	0.85
PF09992	NAGPA	0.85
PF10400	Vir_act_alpha_C	0.85
PF13412	HTH_24	0.85
PF14696	Glyoxalase_5	0.85
PF03466	LysR_substrate	0.85
PF01464	SLT	0.85
PF00903	Glyoxalase	0.85
PF00753	Lactamase_B	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG3670	Carotenoid cleavage dioxygenase or a related enzyme	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.08

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.44 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.44 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.44 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.08 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.08 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	53.39 %
Unclassified	root	N/A	13.56 %

Name	Rank	Taxonomy	Distribution
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	23.73 %
Unclassified	root	N/A	13.56 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.78 %

Name	Rank	Taxonomy	Distribution
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	23.73 %
Unclassified	root	N/A	13.56 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.85 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.85 %

Name	Rank	Taxonomy	Distribution
Thermoleophilum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum	15.25 %
Unclassified	root	N/A	13.56 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	8.47 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.85 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.85 %

Name	Rank	Taxonomy	Distribution
Thermoleophilum album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	15.25 %
Unclassified	root	N/A	13.56 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	8.47 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.85 %
unclassified Patulibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter	0.85 %

Name	Rank	Taxonomy	Distribution
Thermoleophilum album	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	15.25 %
Unclassified	root	N/A	13.56 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	8.47 %
Patulibacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp.	0.85 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10062031	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300003373\|JGI25407J50210_10002765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4174	Open in IMG/M
3300003373\|JGI25407J50210_10006784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2860	Open in IMG/M
3300003373\|JGI25407J50210_10058339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	972	Open in IMG/M
3300003373\|JGI25407J50210_10116645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → unclassified Patulibacter → Patulibacter sp.	658	Open in IMG/M
3300003850\|Ga0058695_1009297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	784	Open in IMG/M
3300003987\|Ga0055471_10030583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1367	Open in IMG/M
3300004013\|Ga0055465_10125480	Not Available	792	Open in IMG/M
3300004153\|Ga0063455_100026793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1668	Open in IMG/M
3300005336\|Ga0070680_101999940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	502	Open in IMG/M
3300005337\|Ga0070682_101712761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	546	Open in IMG/M
3300005338\|Ga0068868_102385262	Not Available	505	Open in IMG/M
3300005354\|Ga0070675_101104358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	729	Open in IMG/M
3300005562\|Ga0058697_10143141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1037	Open in IMG/M
3300005841\|Ga0068863_102433835	Not Available	533	Open in IMG/M
3300005981\|Ga0081538_10045547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2717	Open in IMG/M
3300005981\|Ga0081538_10168593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	959	Open in IMG/M
3300006038\|Ga0075365_10508597	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300006038\|Ga0075365_11000975	Not Available	589	Open in IMG/M
3300006178\|Ga0075367_10228528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1165	Open in IMG/M
3300006844\|Ga0075428_100276407	All Organisms → cellular organisms → Bacteria	1807	Open in IMG/M
3300006847\|Ga0075431_100768928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300006853\|Ga0075420_101302250	Not Available	624	Open in IMG/M
3300007004\|Ga0079218_10286163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1328	Open in IMG/M
3300009094\|Ga0111539_10328114	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300009094\|Ga0111539_11836545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	703	Open in IMG/M
3300009094\|Ga0111539_13472203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	506	Open in IMG/M
3300009100\|Ga0075418_11772267	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009156\|Ga0111538_11573223	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300009156\|Ga0111538_13997875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	509	Open in IMG/M
3300009789\|Ga0126307_10000163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	40995	Open in IMG/M
3300009789\|Ga0126307_10127874	All Organisms → cellular organisms → Bacteria	2027	Open in IMG/M
3300009789\|Ga0126307_10909504	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300009840\|Ga0126313_10023560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	4128	Open in IMG/M
3300009840\|Ga0126313_10055370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2811	Open in IMG/M
3300009840\|Ga0126313_10086744	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300010037\|Ga0126304_10011922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4767	Open in IMG/M
3300010037\|Ga0126304_10593564	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300010038\|Ga0126315_10360523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	907	Open in IMG/M
3300010038\|Ga0126315_10686866	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300010038\|Ga0126315_10893053	Not Available	590	Open in IMG/M
3300010038\|Ga0126315_11043507	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300010039\|Ga0126309_10550414	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300010040\|Ga0126308_10235725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1186	Open in IMG/M
3300010040\|Ga0126308_10503534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	818	Open in IMG/M
3300010041\|Ga0126312_10065800	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300010042\|Ga0126314_10013254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4786	Open in IMG/M
3300010042\|Ga0126314_10049323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2728	Open in IMG/M
3300010044\|Ga0126310_10436419	Not Available	942	Open in IMG/M
3300010044\|Ga0126310_11633722	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300010045\|Ga0126311_10423526	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300010045\|Ga0126311_11181443	Not Available	632	Open in IMG/M
3300010166\|Ga0126306_10709312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	807	Open in IMG/M
3300010396\|Ga0134126_12335098	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300010403\|Ga0134123_13070221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	536	Open in IMG/M
3300012469\|Ga0150984_114847696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	882	Open in IMG/M
3300012902\|Ga0157291_10318593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	546	Open in IMG/M
3300012939\|Ga0162650_100035914	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300014263\|Ga0075324_1069732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	714	Open in IMG/M
3300014487\|Ga0182000_10128296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	890	Open in IMG/M
3300018051\|Ga0184620_10228881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	622	Open in IMG/M
3300018072\|Ga0184635_10386932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	531	Open in IMG/M
3300018073\|Ga0184624_10476063	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300018422\|Ga0190265_10274553	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300018422\|Ga0190265_10494113	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300018422\|Ga0190265_10542301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1279	Open in IMG/M
3300018429\|Ga0190272_10327043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1205	Open in IMG/M
3300018465\|Ga0190269_10289331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	948	Open in IMG/M
3300018466\|Ga0190268_10855884	Not Available	699	Open in IMG/M
3300018466\|Ga0190268_10956508	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300018469\|Ga0190270_10692309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1009	Open in IMG/M
3300018476\|Ga0190274_12528959	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018481\|Ga0190271_10407585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1455	Open in IMG/M
3300018481\|Ga0190271_11550074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	779	Open in IMG/M
3300019356\|Ga0173481_10166339	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300019377\|Ga0190264_10203829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1094	Open in IMG/M
3300019377\|Ga0190264_10899820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	691	Open in IMG/M
3300022756\|Ga0222622_11334833	Not Available	528	Open in IMG/M
3300026067\|Ga0207678_10883677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	790	Open in IMG/M
3300027809\|Ga0209574_10000191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	17044	Open in IMG/M
3300027809\|Ga0209574_10013054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1817	Open in IMG/M
3300027809\|Ga0209574_10165080	Not Available	685	Open in IMG/M
3300027880\|Ga0209481_10509994	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300027909\|Ga0209382_10336276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1695	Open in IMG/M
3300027909\|Ga0209382_11769510	Not Available	603	Open in IMG/M
3300028587\|Ga0247828_10947617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	558	Open in IMG/M
3300028596\|Ga0247821_11270519	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300028597\|Ga0247820_11112044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	568	Open in IMG/M
3300028710\|Ga0307322_10077245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	838	Open in IMG/M
3300028714\|Ga0307309_10211286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	515	Open in IMG/M
3300028720\|Ga0307317_10208135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	660	Open in IMG/M
3300028744\|Ga0307318_10077342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1115	Open in IMG/M
3300028744\|Ga0307318_10165395	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300028744\|Ga0307318_10288937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	574	Open in IMG/M
3300028754\|Ga0307297_10027821	Not Available	1643	Open in IMG/M
3300028809\|Ga0247824_10750178	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300028810\|Ga0307294_10349090	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300028824\|Ga0307310_10245423	Not Available	858	Open in IMG/M
3300028828\|Ga0307312_10305948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1036	Open in IMG/M
3300028875\|Ga0307289_10085604	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300028876\|Ga0307286_10119718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	933	Open in IMG/M
3300028885\|Ga0307304_10574072	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300030006\|Ga0299907_10053189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3230	Open in IMG/M
3300030336\|Ga0247826_10512503	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300030336\|Ga0247826_10659134	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300030497\|Ga0268252_1183271	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031228\|Ga0299914_10026821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4754	Open in IMG/M
3300031548\|Ga0307408_100133822	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300031548\|Ga0307408_100527692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	1038	Open in IMG/M
3300031548\|Ga0307408_100754614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	879	Open in IMG/M
3300031731\|Ga0307405_10864280	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031824\|Ga0307413_10068393	Not Available	2224	Open in IMG/M
3300031901\|Ga0307406_11736365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	554	Open in IMG/M
3300031996\|Ga0308176_10879613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	940	Open in IMG/M
3300032080\|Ga0326721_10373907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album	818	Open in IMG/M
3300032080\|Ga0326721_10650427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	646	Open in IMG/M
3300032126\|Ga0307415_100516144	Not Available	1048	Open in IMG/M
3300033550\|Ga0247829_10488570	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.95%
Host-Associated	Host-Associated	33.05%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.86%
Plants	Host-Associated → Plants	33.05%
Aquatic	Environmental → Aquatic	5.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.64%
Roots	Host-Associated → Plants → Roots	7.63%
Phylloplane	Host-Associated → Plants → Phylloplane	5.08%
Sediment	Environmental → Aquatic → Sediment	3.39%
Marine	Environmental → Aquatic → Marine	1.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.10%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	5.08%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.39%
Loam	Environmental → Terrestrial → Soil → Loam	2.54%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.54%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.78%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	5.08%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.39%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.54%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.27%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	19.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	5.08%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.08%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.54%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.54%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.69%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.85%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003850	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz	Host-Associated	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300014263	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030497	Agave microbial communities from Guanajuato, Mexico - Mg.Sf.rz (v2)	Host-Associated	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_100620313	3300000858	Soil	RTAAGKCCRSTPRCRDCPVRGAVQDELLRSLGLSPNPPLPPHLEGVPRSLHKYEPLLRRTWLERA*
JGI25407J50210_100027654	3300003373	Tabebuia Heterophylla Rhizosphere	VKCCRSTPRCRNCPARRIADERVLRALGLPVEPRLPPHLRGVPPSLHKYEPLLRKSWLERAYAGPEG*
JGI25407J50210_100067841	3300003373	Tabebuia Heterophylla Rhizosphere	VKCCRSTPRCRNCPARQIADERVLQALGVEIEPLPPHLRGVPPSLHKYEPLLRKTWLERAERV*
JGI25407J50210_100583392	3300003373	Tabebuia Heterophylla Rhizosphere	SNPRCRDCPARRIADDRLLVALGIAPEPQLPPHLRGVPRSLHKYEPLLRRAWNERATP*
JGI25407J50210_101166452	3300003373	Tabebuia Heterophylla Rhizosphere	VATTAAGKCCRSTPRCRDCPVRRAVEDELLRSIGLSPEPALPPHLEGVPRSLHKYEPLLRRAWLERA*
Ga0058695_10092972	3300003850	Agave	MKCCRSTPRCRNCPARKIADQDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGATA*
Ga0055471_100305833	3300003987	Natural And Restored Wetlands	MNSASVRAAVKCCRSTPRCRDCPARKIADDQLLRALGIPVEPPLPPHLRGVPQSLHKYEPLLRRAHAERLAQTA*
Ga0055465_101254801	3300004013	Natural And Restored Wetlands	MKCCRSTPRCRDCPARKIAEEDIMRALGIPVHPELPEHLRGVPLSLHKYEPLLRRSYEERAGAPA*
Ga0063455_1000267932	3300004153	Soil	VRDVVKCCRSTPRCRDCPARKIADDELLRALGIKVGPPLPDHLRGVPPSLHKYEPLLRRSYEERLAVRS*
Ga0070680_1019999402	3300005336	Corn Rhizosphere	VPDAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLLRAYDEQVAQTV*
Ga0070682_1017127611	3300005337	Corn Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRTYAERAGQAA*
Ga0068868_1023852621	3300005338	Miscanthus Rhizosphere	VPDAVKCCRSTPRCRNCPARKLADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRAYDERVAQTV*
Ga0070675_1011043582	3300005354	Miscanthus Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEAPLPPHLQGVPPSLHKYEPLLRRTYAERAGQAA*
Ga0058697_101431412	3300005562	Agave	MSLLLCRDVTRTAAGKCCRSTPRCRDCPVRKAAGDEVLHSVGLAPAAPLPPHLEGVPRCLHKYEPLLRRAWLARATS*
Ga0068863_1024338351	3300005841	Switchgrass Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRTYA
Ga0081538_100455476	3300005981	Tabebuia Heterophylla Rhizosphere	VLRCRAVARTAAGKCCRSTPRCRDCPVRRAVEDELLRSLGLSRGPALPPHLEGVPRSLHKYEPLLRRAWLERT*
Ga0081538_101685932	3300005981	Tabebuia Heterophylla Rhizosphere	VKCCRSTPRCRNCPARQIADERVLKALGLEIEPLPPHLRGLPPSLHKYEPLLRKSWLERGAERV*
Ga0075365_105085972	3300006038	Populus Endosphere	VKCCRSTPRCRDCPARKIADDQILRALGIPVDPPLPPHLQGVPPSLHKYEPLLRRSYEQRSLAEA*
Ga0075365_110009751	3300006038	Populus Endosphere	VKCCRSTPRCRDCPARKIADDQLLRALGIPVEPPLPPHLQGVPLSLHKYEPLLRRSYAAQA*
Ga0075367_102285282	3300006178	Populus Endosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPTSLHKYEPLLRRTYDQRVA*
Ga0075428_1002764073	3300006844	Populus Rhizosphere	MKCCRSTPRCRDCPARKIADEDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEERVGAPA*
Ga0075431_1007689282	3300006847	Populus Rhizosphere	VPAAVKCCRSTPRCRDCPARKIADDQLLRALGIPVEPPLPPHLQGIPPSLHKYEPLLKRTYAGRAA*
Ga0075420_1013022502	3300006853	Populus Rhizosphere	MKCCRSTPRCRDCPARKIADDQILRALGIPVEPPLPPHLKGVPPSLHKYEPLLRRSYEERVGATA*
Ga0079218_102861632	3300007004	Agricultural Soil	VKCCRSTPRCRNCPARQFADERVLRAIGVEIEPLPPHMRGVPPSLHKYEPLLRKTWVERA
Ga0111539_103281143	3300009094	Populus Rhizosphere	VKCCRSTPRCRDCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRSYEQRSLAEA*
Ga0111539_118365452	3300009094	Populus Rhizosphere	MRCCNSTPRCRNCPARQVADERVLKAMGIQIEPLPPHLRGVPPSLHKYEPLLRRTYDERVAQTA*
Ga0111539_134722031	3300009094	Populus Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEP
Ga0075418_117722671	3300009100	Populus Rhizosphere	MKCCRSTPRCRDCPARKIADDQILRALGIPVEPPLPPHLKGVPPSLHKYEPLLRRAHSEREQVAQTA*
Ga0111538_115732231	3300009156	Populus Rhizosphere	PRCRDCPARKIADEDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEERVGAPA*
Ga0111538_139978751	3300009156	Populus Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPL
Ga0126307_1000016315	3300009789	Serpentine Soil	VKCCRKTPRCADCPARRIAEAKVLLALGIPPGPPLPPHLEGVPRSLHKYEPLLRKSWEERRRAERVA*
Ga0126307_101278743	3300009789	Serpentine Soil	MKCCRSTPRCRNCPARKIADDEILRALGIPLEPALPEHLRGVPLSLHKYEPLLRRSYEQRTAAVRTAAG*
Ga0126307_109095042	3300009789	Serpentine Soil	VRPDVKCCRSEPRCRDCPARRISDDQVLRALGIPVEPPLPAHLRGVPQSLHKYEALLRRSWEQRHAAADRQTAAV*
Ga0126313_100235607	3300009840	Serpentine Soil	VKCCRKTPRCADCPARRIAEAKVLLALGIPPGPPLPPDLEGVPRSLHKYEPLLRKSWEERRRAERVA*
Ga0126313_100553705	3300009840	Serpentine Soil	VKCCKSTPRCRNCPARKIADDQILRALGIPVEPPLPEHLRGVPRSLHKYEPLLRQSWLERA*
Ga0126313_100867442	3300009840	Serpentine Soil	VLASAHTAMRCCRSTPRCRDCPARKIADEQVLRSLGIPVEPRLPPHLRGLPRSLHKYEPLLRRSWLQRGPARPGA*
Ga0126304_100119223	3300010037	Serpentine Soil	VKCCRSTPRCRDCPARKIADDRILRALGAPVEPPLPPHLRGLPPSLHKYEPLLRRTWREGRETASA*
Ga0126304_105935642	3300010037	Serpentine Soil	CPARKIADDEILRALGIPLEPALPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA*
Ga0126315_103605232	3300010038	Serpentine Soil	SAHTAMRCCRSTPRCRDCPARKIADEQVLRSLGIPVEPRLPPHLRGLPRSLHKYEPLLRRSWLQRGPARPGA*
Ga0126315_106868662	3300010038	Serpentine Soil	MKCCRSTPRCRDCPARKIADDQILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSFEARAVV*
Ga0126315_108930531	3300010038	Serpentine Soil	MKCCRSTPRCRNCPARKIADDEILRALGIPVEPALPEHLRGVPLSLHKYEPLLRCSYEQRTAA
Ga0126315_110435071	3300010038	Serpentine Soil	DCPARKIADQDVLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA*
Ga0126309_105504142	3300010039	Serpentine Soil	MRCCRSTPRCRDCPARKIADEQVLRSLGIPVEPRLPPHLHGLPRSLHKYEPLLRQSWLERA*
Ga0126308_102357252	3300010040	Serpentine Soil	VKCCQSTPRCRNCPARKIADDQLLRALGLPVAPKLPPHLQGVPLSLHKYEPLLRRSYEQRAPA*
Ga0126308_105035342	3300010040	Serpentine Soil	VRGAVKCCRSSPRCRDCPARKIADEELLRALGIPVHPPLPPHLQGVPASLHKYEPLLRRAHDERLARTAV*
Ga0126312_100658002	3300010041	Serpentine Soil	MRCCRSTPRCRDCPARKIADEQVLRSLGIPVEPRLPPHLRGLPRSLHKYEPLLRRSWLQRGPARPGA*
Ga0126314_100132548	3300010042	Serpentine Soil	KTPRCADCPARRIAEAKVLLALGIPPGPPLPPHLEGVPRSLHKYEPLLRKSWEERRRAERVA*
Ga0126314_100493234	3300010042	Serpentine Soil	MKCCRSTPRCRNCPARKIADDQILRALGIPVEPALPEHLRGVPRSLHKYEPLLRQSWLERA*
Ga0126310_104364192	3300010044	Serpentine Soil	VRGAVKCCRSTPRCRDCPARKIADDALLRALGIPVEPPLPPHLQGVQASLHKYEPLLRRAHDERLAQTAV*
Ga0126310_116337222	3300010044	Serpentine Soil	VKCCRSEPRCRDCPARRISDDQVLRALGIPVEPPLPAHLRGVPQSLHKYEALLRRSWEQRHAAADRQTAAV*
Ga0126311_104235261	3300010045	Serpentine Soil	VKCCRSEPRCRDCPARRISEDQVLRALGIPVEPPPPAHLRGVPRSLHKYEALLRRSWEQRHAAAERQTAAV*
Ga0126311_111814431	3300010045	Serpentine Soil	VRGAVKCCRSTPRCRDCPARKIADDALLRALGIPVEPPLPPHLQGVPASLHKYEPLLRRAHEQRLAQGAV*
Ga0126306_107093122	3300010166	Serpentine Soil	MKCCRSTPRCRDCPARKIADQDVLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA*
Ga0134126_123350981	3300010396	Terrestrial Soil	RCRDCPARKIVDDQLLRALGLPVEPPLPPHLQGVPRSLHKYEPLLRRSYAAQA*
Ga0134123_130702212	3300010403	Terrestrial Soil	MRCCNSTPRCRNCPARQVADERVLKAMGIQVEPLPAHLRGVPPSLHKYEPLLRQTWKR*
Ga0150984_1148476963	3300012469	Avena Fatua Rhizosphere	CCQSTPRCRNCPARQVADERALRAMGVQVEPLPPHLRGVPPSLHKYEPLLREAWKR*
Ga0157291_103185932	3300012902	Soil	MRCCNSTPRCRNCPARQVADERVLKAMGIQVEPLPPHLRGVPPSLHKYEPLLRQAWKR*
Ga0162650_1000359142	3300012939	Soil	MPLKCCRSTPRCRDCPARRPADDQLLVVLGMTAQPRLPEHLRGVPPSLHKYEPLLKRSFAERAGAR*
Ga0075324_10697322	3300014263	Natural And Restored Wetlands	VPVTPMKCCRSTPRCRDCPARKIADDQILRALGIPVEPPLPEHLRGVPLSLHKYEPLLRRSYEERAGAPA*
Ga0182000_101282962	3300014487	Soil	MKCCRSTPRCRNCPASHIADERVLKALGIPVQPVPPHLRGLPPSLHKYEPLLKRTYAERAVV*
Ga0184620_102288812	3300018051	Groundwater Sediment	MKCCRSTPRCRDCPARKISDDQILRALGLPVEVALPEHLRGVPPSLHKYEPLLRRAWAERQVA
Ga0184635_103869322	3300018072	Groundwater Sediment	MKCCRSTPRCRDCPARKIADDEILRALGIRVEPPLPEHLRGVPLSLHKYEPLLRRSYEQRATAGV
Ga0184624_104760632	3300018073	Groundwater Sediment	VPLKCCRSTPRCRDCPARRPADDQLLVVLGMTAQPRLPEHLRGVPPSLHKYEPLLKRSFAERAGAR
Ga0190265_102745532	3300018422	Soil	VRPAVKCCRSTPRCRNCPARRIADDQLLRALGIEVSEPLPPHLQGMPRSLHKYEPLLRRAWEERAAETTRV
Ga0190265_104941131	3300018422	Soil	VLASQPTADVKCCRSTPRCRNCPARQIADERVLKAMGIEIEPLPPHLRGVPPSLHKYEPLLRKSWLERV
Ga0190265_105423012	3300018422	Soil	VKCCRSSPRCRNCPARQIADEQLLRALGVPVEPPLPEHLRGVPRSLHKYEPLLRRSWSERQAAGV
Ga0190272_103270432	3300018429	Soil	VKCCRSTPRCRDCPARKIVDEDLLRALGIPVAEPLPAHLRGVPLSLHKYEPLLRRSFEERAAAQV
Ga0190269_102893311	3300018465	Soil	MKCCRSTPRCRDCPARKIADQDILRALGIPVEADLPEHLRGVPLSLHKYEPLLRRSYEQRVA
Ga0190268_108558842	3300018466	Soil	MKCCRSTPRCRDCPARKIADEDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEECAGAPA
Ga0190268_109565081	3300018466	Soil	MKCCRSTPRCRDCPARKIADQDILRALGIPVEADLPEHLRGVPLSLHKYEPLLRRSYEERVGAPA
Ga0190270_106923092	3300018469	Soil	MKCCRSTPRCRDCPARKIADNDLLRALGIPVEPDLPEHLRGVPLSLHKYEPLLRPASA
Ga0190274_125289591	3300018476	Soil	MKCCRSTPRCRDCPARKIADNDLLRALGIPVEPDLPEHLRGVPLSLHKYEPLLRRSYEERVGAPV
Ga0190271_104075852	3300018481	Soil	VLASRPDLVKCCRATPRCRNCPARQVSDERVLRAMGIQIEPLPPHLRGVPPSLHKYEPLLKKTWLERV
Ga0190271_115500742	3300018481	Soil	VPPLKCCRSTPRCRNCPARTIQDDRVLAALGLPTDPRPDQARLLCLPPSLHKYAPLLERREAEPV
Ga0173481_101663392	3300019356	Soil	MKCCNSTPRCRNCPARQVADERVLRALGVQVEPLPPHLRGVPPSLHKYEPLLRQAWKR
Ga0190264_102038292	3300019377	Soil	VLASVPALVKCCRATPRCRNCPARQVSDERVLRAMGLQIEPLPPHLRGVPPSLHKYEPLLKKTWLERV
Ga0190264_108998201	3300019377	Soil	PRCRNCPARKIADDQLLRALGIPIEPPVPEHLKGVPRSLHKYEPLLRRSWAERQTA
Ga0222622_113348332	3300022756	Groundwater Sediment	VRSHVKCCRSTPRCRDCPARKIADDELLRALGIPVAAPLPAHLRGVPPSLHKYEPLLRRTWAE
Ga0207678_108836772	3300026067	Corn Rhizosphere	VPGAVKCCRSTPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRTYAERAGQAA
Ga0209574_1000019115	3300027809	Agave	MKCCRSTPRCRNCPARKIADQDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGATA
Ga0209574_100130543	3300027809	Agave	VRPAVKCCRSTPRCRDCPARKIADDQLLRALGIPVEPQLPPHLQGVPLSLHKYEPLLRRAHAERERVAQTA
Ga0209574_101650801	3300027809	Agave	VKCCRSTPRCRNCPARRIADERVLRALGLPVDPPLPPHLRGVPPSLHKYEPLLLRSWRERETVPSQGA
Ga0209481_105099942	3300027880	Populus Rhizosphere	MKCCRSTPRCRDCPARKIADEDILRALGIPVEPELPEHLRGVPLSLHKYEPLLSRSYEERVGAPA
Ga0209382_103362762	3300027909	Populus Rhizosphere	MKCCRSTPRCRDCPARKIADEDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEERVGAPA
Ga0209382_117695101	3300027909	Populus Rhizosphere	VKCCRSTPRCRDCPARKIADDQLLRALGIPVEPPLPPHLQGIPPSLHKYEPLLKR
Ga0247828_109476172	3300028587	Soil	MRCCNSTPRCRNCPARQVADERVLKAMGIAVEPLPPHLRGVPPSLHKYEPLLRQAWKR
Ga0247821_112705192	3300028596	Soil	MRCCNSTPRCRNCPARQVADERVLKAMGIQVEPLPAHLRGVPPSLHKYEPLLRQAWKR
Ga0247820_111120442	3300028597	Soil	MRCCHSTPRCRNCPARQVADERVLKAMGIAVEPLPPHLRGVPPSLHKYEPLLRQAWKR
Ga0307322_100772452	3300028710	Soil	VRSHVKCCRSTPRCRDCPARKIADDELLRALGIPVAAPLPAHLRGVPPSLHKYEPLLRRTWAERQVA
Ga0307309_102112862	3300028714	Soil	VRPAVKCCRSTPRCRDCPARKIADDQLLRALGIPVEAPLPPHLQGVPLSLHKYEPLLRRAHDERLAQTA
Ga0307317_102081352	3300028720	Soil	VKCCRSTPRCRDCPARKIADDELLRALGIPVAAPLPAHLRGVPPSLHKYEPLLRRTWAERQVA
Ga0307318_100773422	3300028744	Soil	MKCCRSTPRCRNCPARKIADHDLLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEERAGAPA
Ga0307318_101653952	3300028744	Soil	SVPLKCCRSTPRCRDCPARRPADDQLLVVLGMTAQPRLPEHLRGVPPSLHKYEPLLKRSFAERAGAR
Ga0307318_102889372	3300028744	Soil	MRCCRSTPRCRNCPARQVADERVLQAMGIQVEPLPPHLRGVPLSLHKYEPLLRQAWKR
Ga0307297_100278213	3300028754	Soil	VRSHVKCCRSTPRCRDCPARKIADDELLRALGIPVAAPLPAHLRGVPPSLHKYEPLLRRAWAERQVA
Ga0247824_107501782	3300028809	Soil	NPACSTPRCRDCPARKITDDEILRALGIPVEPPLPEHLRDVPLSLHKYEPLLRRSYEQRATAGV
Ga0307294_103490902	3300028810	Soil	CRSMPRCRDCPARKIADDQLLRALGIPVEPPLPPHLEGVPPSLHKYEPLLRRTWAERQVA
Ga0307310_102454231	3300028824	Soil	MPRCRDCPARKIADDQLLRALGIPVEPPLPTHLEGVPPSLHKYEPLLKRTYAGRAA
Ga0307312_103059482	3300028828	Soil	VRGAVKCCRTTPRCRDCPARKIADDELLRALGIPVEAPLPPHLQGVPPSLHKYEPLLRRAHDKRLAQTA
Ga0307289_100856043	3300028875	Soil	MPRCRDCPARKIADDQLLRALGIPVEPPLPPHLEGVPPSLHKYEPLLKRTYAGRA
Ga0307286_101197182	3300028876	Soil	MKCCRSTPRCRDCPARKIADDEILRALGISVEPPLPEHLRGVPLSLHKYEPLLRQAWKR
Ga0307304_105740722	3300028885	Soil	LREFASVRGHVKCCRSTPRCRDCPARKIADDELLRALGIPVAAPLPAHLRGVPPSLHKYEPLLRRAWAERQVA
Ga0299907_100531892	3300030006	Soil	VKCCRATPRCRNCPARQVSDERVLRAMGIQIEPLPPHLRGVPPSLHKYEPLLKKTWLERV
Ga0247826_105125032	3300030336	Soil	VKCCRSTPRCRDCPARKIADDQLLRALGIPVEAPLPPHLQGVPPSLHKYEPLLRRAHDERLAQTA
Ga0247826_106591341	3300030336	Soil	STPRCRDCPARKIADDEILRALGIPVEPPLPEHLRGVPLSLHKYEPLLRRSYEQRAAVGV
Ga0268252_11832712	3300030497	Agave	PNKSASVRPAVKCCRSMPRCRNCPARQIADERVLQALGLPVDPPLPPHLRGVPPSLHKYEPLLLRSWREREPAA
Ga0299914_100268215	3300031228	Soil	VLASRSALVKCCRATPRCRNCPARQVSDERVLRAMGIQIEPLPPHLRGVPPSLHKYEPLLKKTWLERV
Ga0307408_1001338224	3300031548	Rhizosphere	MKCCRSTPRCRDCPARKIADDDLLRLLGIPVEPELPDHLRGVPLSLHKYEPLLRRSYEERAGAPA
Ga0307408_1005276922	3300031548	Rhizosphere	MKCCRSVPRCRNCPARKIADDQILRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRSYEERVVAEA
Ga0307408_1007546143	3300031548	Rhizosphere	SMKCCRSTPRCRDCPARKIADEDVLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA
Ga0307405_108642801	3300031731	Rhizosphere	KLLACAGSMKCCRSTPRCRDCPARKIADQDVLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA
Ga0307413_100683932	3300031824	Rhizosphere	MKCCRSTPRCRDCPARKIADQDVLRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGAPA
Ga0307406_117363652	3300031901	Rhizosphere	VKCCKSTPRCRNCPARKIADDQILRALGIPVEPPLPEHLRGVPRSLHKYEPLLRQSWLER
Ga0308176_108796132	3300031996	Soil	VRAAVKCCRSTPRCRNCPARKIADDQLLRALGVPVEPPLPPHLQGVPLSLHKYEPLLRRSYAVRA
Ga0326721_103739072	3300032080	Soil	VKCCRSTPRCRDCPARKIADDQLLRALGIPVEPPLPPHLQGVPPSLHKYEPLLRRSYEQRSLAEA
Ga0326721_106504272	3300032080	Soil	MKCCRSTPRCRDCPARKIADEDILRALGIPVEPDLPEHLRGVPLSLHKYEPLLRRSYEERVGAPV
Ga0307415_1005161441	3300032126	Rhizosphere	VLASAHTAMRCCRSTPRCRDCPARKIADEQVLRSLGIPVEPRLPPHLRGLPRSLHKYEPLLRRSWLQRGPARPGA
Ga0247829_104885702	3300033550	Soil	MKCCRSTPRCRDCPARKIADDEILRALGIPVEPPLPEHLRGVPLSLHKYEPLLRRSYEQRAAVGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F076270

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences